Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:07:55 (2989410): wrapper (7.7.26015): starting
13:07:55 (2989410): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 13:07:55] Arguments: --nthreads 8
[2025-10-10 13:07:55] Threads: 8
[2025-10-10 13:07:55] Checking for CVMFS
[2025-10-10 13:07:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 13:07:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 13:07:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 13:07:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 13:07:58] 2.13.2.0 839487 135489 248588 151555 2 430 29607969 32935937 25204 16776704 0 92314857 99.683 78806977 29262 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 13:07:58] CVMFS is ok
[2025-10-10 13:07:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 13:07:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 13:07:58] Further information can be found at the LHC@home message board.
[2025-10-10 13:07:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 13:07:58] Checking for apptainer binary...
[2025-10-10 13:07:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 13:07:58] Running /usr/bin/apptainer --version
[2025-10-10 13:07:58] apptainer version 1.4.3-1.el9
[2025-10-10 13:07:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 13:07:59] c-6-3.aglt2.org
[2025-10-10 13:07:59] apptainer works
[2025-10-10 13:07:59] Set ATHENA_PROC_NUMBER=8
[2025-10-10 13:07:59] Set ATHENA_CORE_NUMBER=8
[2025-10-10 13:07:59] Starting ATLAS job with PandaID=6837365282
[2025-10-10 13:07:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:49:18 (363672): wrapper (7.7.26015): starting
19:49:18 (363672): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 19:49:18] Arguments: --nthreads 8
[2025-10-10 19:49:18] Threads: 8
[2025-10-10 19:49:18] This job has been restarted, cleaning up previous attempt
[2025-10-10 19:49:18] Checking for CVMFS
[2025-10-10 19:49:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 19:49:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 19:49:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 19:49:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 19:49:19] 2.13.2.0 839487 135890 242996 151565 1 71 26799046 32935937 21760 16776704 0 93709502 99.680 80893297 29179 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 19:49:19] CVMFS is ok
[2025-10-10 19:49:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 19:49:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 19:49:19] Further information can be found at the LHC@home message board.
[2025-10-10 19:49:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 19:49:19] Checking for apptainer binary...
[2025-10-10 19:49:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 19:49:19] Running /usr/bin/apptainer --version
[2025-10-10 19:49:19] apptainer version 1.4.3-1.el9
[2025-10-10 19:49:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 19:49:19] c-6-3.aglt2.org
[2025-10-10 19:49:19] apptainer works
[2025-10-10 19:49:19] Set ATHENA_PROC_NUMBER=8
[2025-10-10 19:49:19] Set ATHENA_CORE_NUMBER=8
[2025-10-10 19:49:19] Starting ATLAS job with PandaID=6837365282
[2025-10-10 19:49:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 06:10:53]  *** The last 200 lines of the pilot log: ***
[2025-10-11 06:10:53] 2025-10-11 10:09:43,078 | INFO     | time since job start (37206s) is within the limit (172800.0s)
[2025-10-11 06:10:53] 2025-10-11 10:09:43,512 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 06:10:53] 2025-10-11 10:09:43,566 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.154224999999
[2025-10-11 06:10:53] 2025-10-11 10:09:43,682 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837365282/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 06:10:53] 2025-10-11 10:09:43,683 | INFO     | extracted standard info from prmon json
[2025-10-11 06:10:53] 2025-10-11 10:09:43,683 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 06:10:53] 2025-10-11 10:09:43,683 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 06:10:53] 2025-10-11 10:09:43,738 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 06:10:53] 2025-10-11 10:09:43,738 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 06:10:53] 2025-10-11 10:09:43,858 | INFO     | fitting pss+swap vs Time
[2025-10-11 06:10:53] 2025-10-11 10:09:43,912 | INFO     | sum of square deviations: 70037584067.80315
[2025-10-11 06:10:53] 2025-10-11 10:09:43,979 | INFO     | sum of deviations: -165927388838.22156
[2025-10-11 06:10:53] 2025-10-11 10:09:43,980 | INFO     | mean x: 1760158767.955665
[2025-10-11 06:10:53] 2025-10-11 10:09:43,980 | INFO     | mean y: 2066857.658456486
[2025-10-11 06:10:53] 2025-10-11 10:09:43,980 | INFO     | -- intersect: 4172092882.8971877
[2025-10-11 06:10:53] 2025-10-11 10:09:43,980 | INFO     | intersect: 4172092882.8971877
[2025-10-11 06:10:53] 2025-10-11 10:09:43,981 | INFO     | chi2: 3.164853580431315
[2025-10-11 06:10:53] 2025-10-11 10:09:44,037 | INFO     | sum of square deviations: 68326716331.96535
[2025-10-11 06:10:53] 2025-10-11 10:09:44,142 | INFO     | sum of deviations: -117128587290.67708
[2025-10-11 06:10:53] 2025-10-11 10:09:44,143 | INFO     | mean x: 1760158615.4586093
[2025-10-11 06:10:53] 2025-10-11 10:09:44,143 | INFO     | mean y: 2071193.3129139072
[2025-10-11 06:10:53] 2025-10-11 10:09:44,143 | INFO     | -- intersect: 3019410575.386083
[2025-10-11 06:10:53] 2025-10-11 10:09:44,143 | INFO     | intersect: 3019410575.386083
[2025-10-11 06:10:53] 2025-10-11 10:09:44,144 | INFO     | chi2: 2.475259745739488
[2025-10-11 06:10:53] 2025-10-11 10:09:44,144 | INFO     | current chi2=2.475259745739488 (change=21.789122850917085 %)
[2025-10-11 06:10:53] 2025-10-11 10:09:44,182 | INFO     | right removable region: 603
[2025-10-11 06:10:53] 2025-10-11 10:09:44,183 | INFO     | sum of square deviations: 68326472148.19864
[2025-10-11 06:10:53] 2025-10-11 10:09:44,230 | INFO     | sum of deviations: -267584640786.5629
[2025-10-11 06:10:53] 2025-10-11 10:09:44,230 | INFO     | mean x: 1760158920.463576
[2025-10-11 06:10:53] 2025-10-11 10:09:44,230 | INFO     | mean y: 2075900.0198675497
[2025-10-11 06:10:53] 2025-10-11 10:09:44,230 | INFO     | -- intersect: 6895326460.914333
[2025-10-11 06:10:53] 2025-10-11 10:09:44,230 | INFO     | intersect: 6895326460.914333
[2025-10-11 06:10:53] 2025-10-11 10:09:44,231 | INFO     | chi2: 1.3730979276499116
[2025-10-11 06:10:53] 2025-10-11 10:09:44,232 | INFO     | current chi2=1.3730979276499116 (change=56.61417210135888 %)
[2025-10-11 06:10:53] 2025-10-11 10:09:44,233 | INFO     | sum of square deviations: 66643527224.3973
[2025-10-11 06:10:53] 2025-10-11 10:09:44,255 | INFO     | sum of deviations: -269241021266.39578
[2025-10-11 06:10:53] 2025-10-11 10:09:44,256 | INFO     | mean x: 1760159072.9682806
[2025-10-11 06:10:53] 2025-10-11 10:09:44,256 | INFO     | mean y: 2076043.9265442404
[2025-10-11 06:10:53] 2025-10-11 10:09:44,256 | INFO     | -- intersect: 7113149634.038103
[2025-10-11 06:10:53] 2025-10-11 10:09:44,256 | INFO     | intersect: 7113149634.038103
[2025-10-11 06:10:53] 2025-10-11 10:09:44,257 | INFO     | chi2: 1.3332277226305607
[2025-10-11 06:10:53] 2025-10-11 10:09:44,257 | INFO     | current chi2=1.3332277226305607 (change=2.9036679916624495 %)
[2025-10-11 06:10:53] 2025-10-11 10:09:44,257 | INFO     | left removable region: 20
[2025-10-11 06:10:53] 2025-10-11 10:09:44,258 | INFO     | sum of square deviations: 61444736452.243645
[2025-10-11 06:10:53] 2025-10-11 10:09:44,271 | INFO     | sum of deviations: -195376140614.00165
[2025-10-11 06:10:53] 2025-10-11 10:09:44,271 | INFO     | mean x: 1760159194.9639795
[2025-10-11 06:10:53] 2025-10-11 10:09:44,271 | INFO     | mean y: 2079085.1903945112
[2025-10-11 06:10:53] 2025-10-11 10:09:44,272 | INFO     | -- intersect: 5598866218.382715
[2025-10-11 06:10:53] 2025-10-11 10:09:44,272 | INFO     | intersect: 5598866218.382715
[2025-10-11 06:10:53] 2025-10-11 10:09:44,313 | INFO     | chi2: 0.6188768322756858
[2025-10-11 06:10:53] 2025-10-11 10:09:44,313 | INFO     | -- intersect: 5598866218.382715
[2025-10-11 06:10:53] 2025-10-11 10:09:44,313 | INFO     | current memory leak: -3.18 B/s (using 583 data points, chi2=0.62)
[2025-10-11 06:10:53] 2025-10-11 10:09:44,314 | INFO     | could have reported an average CPU frequency of 2600 MHz (24 samples)
[2025-10-11 06:10:53] 2025-10-11 10:09:44,314 | INFO     | ..............................
[2025-10-11 06:10:53] 2025-10-11 10:09:44,314 | INFO     | . Timing measurements:
[2025-10-11 06:10:53] 2025-10-11 10:09:44,314 | INFO     | . get job = 0 s
[2025-10-11 06:10:53] 2025-10-11 10:09:44,314 | INFO     | . initial setup = 2 s
[2025-10-11 06:10:53] 2025-10-11 10:09:44,315 | INFO     | . payload setup = 12 s
[2025-10-11 06:10:53] 2025-10-11 10:09:44,315 | INFO     | . stage-in = 0 s
[2025-10-11 06:10:53] 2025-10-11 10:09:44,315 | INFO     | . payload execution = 37122 s
[2025-10-11 06:10:53] 2025-10-11 10:09:44,315 | INFO     | . stage-out = 7 s
[2025-10-11 06:10:53] 2025-10-11 10:09:44,315 | INFO     | . log creation = 0 s
[2025-10-11 06:10:53] 2025-10-11 10:09:44,315 | INFO     | ..............................
[2025-10-11 06:10:53] 2025-10-11 10:09:44,739 | INFO     | 
[2025-10-11 06:10:53] 2025-10-11 10:09:44,740 | INFO     | job summary report
[2025-10-11 06:10:53] 2025-10-11 10:09:44,740 | INFO     | --------------------------------------------------
[2025-10-11 06:10:53] 2025-10-11 10:09:44,740 | INFO     | PanDA job id: 6837365282
[2025-10-11 06:10:53] 2025-10-11 10:09:44,740 | INFO     | task id: 46676269
[2025-10-11 06:10:53] 2025-10-11 10:09:44,740 | INFO     | errors: (none)
[2025-10-11 06:10:53] 2025-10-11 10:09:44,740 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 06:10:53] 2025-10-11 10:09:44,741 | INFO     | pilot state: finished 
[2025-10-11 06:10:53] 2025-10-11 10:09:44,741 | INFO     | transexitcode: 0
[2025-10-11 06:10:53] 2025-10-11 10:09:44,741 | INFO     | exeerrorcode: 0
[2025-10-11 06:10:53] 2025-10-11 10:09:44,741 | INFO     | exeerrordiag: 
[2025-10-11 06:10:53] 2025-10-11 10:09:44,741 | INFO     | exitcode: 0
[2025-10-11 06:10:53] 2025-10-11 10:09:44,741 | INFO     | exitmsg: OK
[2025-10-11 06:10:53] 2025-10-11 10:09:44,741 | INFO     | cpuconsumptiontime: 50043 s
[2025-10-11 06:10:53] 2025-10-11 10:09:44,741 | INFO     | nevents: 400
[2025-10-11 06:10:53] 2025-10-11 10:09:44,741 | INFO     | neventsw: 0
[2025-10-11 06:10:53] 2025-10-11 10:09:44,741 | INFO     | pid: 386473
[2025-10-11 06:10:53] 2025-10-11 10:09:44,742 | INFO     | pgrp: 386473
[2025-10-11 06:10:53] 2025-10-11 10:09:44,742 | INFO     | corecount: 8
[2025-10-11 06:10:53] 2025-10-11 10:09:44,742 | INFO     | event service: False
[2025-10-11 06:10:53] 2025-10-11 10:09:44,742 | INFO     | sizes: {0: 2348029, 1: 2348885, 2: 2348885, 10: 2349175, 12: 2349203, 37139: 2389752, 37140: 2389879, 37148: 2398933, 37149: 2398989, 37187: 2399183}
[2025-10-11 06:10:53] 2025-10-11 10:09:44,742 | INFO     | --------------------------------------------------
[2025-10-11 06:10:53] 2025-10-11 10:09:44,742 | INFO     | 
[2025-10-11 06:10:53] 2025-10-11 10:09:44,742 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 06:10:53] 2025-10-11 10:09:44,908 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,908 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,908 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,908 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,909 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,909 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,909 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,909 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,909 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,909 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,909 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,909 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,909 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,909 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,910 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,910 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,910 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,910 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 06:10:53] 2025-10-11 10:09:44,910 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,910 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 06:10:53] 2025-10-11 10:09:44,910 | INFO     | job 6837365282 has completed (purged errors)
[2025-10-11 06:10:53] 2025-10-11 10:09:44,910 | INFO     | overall cleanup function is called
[2025-10-11 06:10:53] 2025-10-11 10:09:45,944 | INFO     | --- collectZombieJob: --- 10, [386473]
[2025-10-11 06:10:53] 2025-10-11 10:09:45,944 | INFO     | zombie collector waiting for pid 386473
[2025-10-11 06:10:53] 2025-10-11 10:09:45,944 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 06:10:53] 2025-10-11 10:09:45,944 | INFO     | collected zombie processes
[2025-10-11 06:10:53] 2025-10-11 10:09:45,944 | INFO     | will attempt to kill all subprocesses of pid=386473
[2025-10-11 06:10:53] 2025-10-11 10:09:46,860 | INFO     | process IDs to be killed: [386473] (in reverse order)
[2025-10-11 06:10:53] 2025-10-11 10:09:47,007 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 06:10:53] 2025-10-11 10:09:47,008 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 06:10:53] 2025-10-11 10:09:47,025 | INFO     | did not find any defunct processes belonging to 386473
[2025-10-11 06:10:53] 2025-10-11 10:09:47,042 | INFO     | did not find any defunct processes belonging to 386473
[2025-10-11 06:10:53] 2025-10-11 10:09:47,043 | INFO     | ready for new job
[2025-10-11 06:10:53] 2025-10-11 10:09:47,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 06:10:53] 2025-10-11 10:09:47,046 | INFO     | ***************************************
[2025-10-11 06:10:53] 2025-10-11 10:09:47,046 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 06:10:53] 2025-10-11 10:09:47,046 | INFO     | ***************************************
[2025-10-11 06:10:53] 2025-10-11 10:09:47,046 | INFO     | 
[2025-10-11 06:10:53] 2025-10-11 10:09:47,060 | INFO     | architecture information:
[2025-10-11 06:10:53] 2025-10-11 10:09:47,071 | INFO     | executing command: cat /etc/os-release
[2025-10-11 06:10:53] 2025-10-11 10:09:47,210 | INFO     | cat /etc/os-release:
[2025-10-11 06:10:53] NAME="CentOS Linux"
[2025-10-11 06:10:53] VERSION="7 (Core)"
[2025-10-11 06:10:53] ID="centos"
[2025-10-11 06:10:53] ID_LIKE="rhel fedora"
[2025-10-11 06:10:53] VERSION_ID="7"
[2025-10-11 06:10:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 06:10:53] ANSI_COLOR="0;31"
[2025-10-11 06:10:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 06:10:53] HOME_URL="https://www.centos.org/"
[2025-10-11 06:10:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 06:10:53] 
[2025-10-11 06:10:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 06:10:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 06:10:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 06:10:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 06:10:53] 
[2025-10-11 06:10:53] 2025-10-11 10:09:47,210 | INFO     | ***************************************
[2025-10-11 06:10:53] 2025-10-11 10:09:47,715 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 06:10:53] 2025-10-11 10:09:47,755 | INFO     | sufficient remaining disk space (74612473856 B)
[2025-10-11 06:10:53] 2025-10-11 10:09:47,756 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 06:10:53] 2025-10-11 10:09:47,756 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 06:10:53] 2025-10-11 10:09:47,756 | INFO     | update_server=False
[2025-10-11 06:10:53] 2025-10-11 10:09:47,756 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 06:10:53] 2025-10-11 10:09:47,855 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 06:10:53] 2025-10-11 10:09:47,855 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 06:10:53] 2025-10-11 10:09:47,855 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 06:10:53] 2025-10-11 10:09:47,855 | INFO     | will abort loop
[2025-10-11 06:10:53] 2025-10-11 10:09:48,128 | INFO     | all payload control threads have been joined
[2025-10-11 06:10:53] 2025-10-11 10:09:48,486 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 06:10:53] 2025-10-11 10:09:48,621 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 06:10:53] 2025-10-11 10:09:48,728 | INFO     | all data control threads have been joined
[2025-10-11 06:10:53] 2025-10-11 10:09:48,762 | INFO     | [job] retrieve thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:48,773 | INFO     | [payload] validate_post thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:48,866 | INFO     | [job] job monitor thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:48,992 | INFO     | [job] validate thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:49,101 | INFO     | all job control threads have been joined
[2025-10-11 06:10:53] 2025-10-11 10:09:49,134 | INFO     | [payload] control thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:49,502 | INFO     | [data] copytool_in thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:49,502 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:49,697 | INFO     | [payload] failed_post thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:49,715 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:49,734 | INFO     | [data] control thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:49,762 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:49,774 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 06:10:53] 2025-10-11 10:09:49,794 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:50,107 | INFO     | [job] control thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:50,641 | INFO     | [data] copytool_out thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:50,780 | INFO     | [job] queue monitor thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:09:52,495 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 06:10:53] 2025-10-11 10:10:16,786 | INFO     | PID=371063 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 06:10:53] 2025-10-11 10:10:16,786 | INFO     | .. there are 38 such processes running
[2025-10-11 06:10:53] 2025-10-11 10:10:16,786 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 06:10:53] 2025-10-11 10:10:16,786 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 06:10:53] 2025-10-11 10:10:16,786 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 06:10:53] 2025-10-11 10:10:45,213 | INFO     | [monitor] cgroup control has ended
[2025-10-11 06:10:53] 2025-10-11 10:10:46,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140439020926784)>', '<ExcThread(monitor, started 140438291859200)>']
[2025-10-11 06:10:53] 2025-10-11 10:10:46,986 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 06:10:53] 2025-10-11 10:10:46,987 | INFO     | [monitor] control thread has ended
[2025-10-11 06:10:53] 2025-10-11 10:10:51,660 | INFO     | all workflow threads have been joined
[2025-10-11 06:10:53] 2025-10-11 10:10:51,660 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 06:10:53] 2025-10-11 10:10:51,660 | INFO     | traces error code: 0
[2025-10-11 06:10:53] 2025-10-11 10:10:51,661 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 06:10:53] 2025-10-11 10:10:52,864 [wrapper] ==== pilot stdout END ====
[2025-10-11 06:10:53] 2025-10-11 10:10:52,885 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 06:10:53] 2025-10-11 10:10:52,917 [wrapper] pilotpid: 371063
[2025-10-11 06:10:53] 2025-10-11 10:10:52,922 [wrapper] Pilot exit status: 0
[2025-10-11 06:10:53] 2025-10-11 10:10:52,990 [wrapper] pandaids: 6837365282 6837365282
[2025-10-11 06:10:53] 2025-10-11 10:10:53,125 [wrapper] cleanup supervisor_pilot 2961520 371064
[2025-10-11 06:10:53] 2025-10-11 10:10:53,130 [wrapper] Test setup, not cleaning
[2025-10-11 06:10:53] 2025-10-11 10:10:53,139 [wrapper] apfmon messages muted
[2025-10-11 06:10:53] 2025-10-11 10:10:53,147 [wrapper] ==== wrapper stdout END ====
[2025-10-11 06:10:53] 2025-10-11 10:10:53,150 [wrapper] ==== wrapper stderr END ====
[2025-10-11 06:10:53]  *** Error codes and diagnostics ***
[2025-10-11 06:10:53]     "exeErrorCode": 0,
[2025-10-11 06:10:53]     "exeErrorDiag": "",
[2025-10-11 06:10:53]     "pilotErrorCode": 0,
[2025-10-11 06:10:53]     "pilotErrorDiag": "",
[2025-10-11 06:10:53]  *** Listing of results directory ***
[2025-10-11 06:10:53] total 630120
[2025-10-11 06:10:53] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 18:39 pilot3.tar.gz
[2025-10-11 06:10:53] -rwx------. 1 boincer umatlas     36292 Oct  9 18:53 runpilot2-wrapper.sh
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 18:53 queuedata.json
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas       100 Oct 10 13:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 06:10:53] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 13:07 run_atlas
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas       105 Oct 10 13:07 job.xml
[2025-10-11 06:10:53] -rw-r--r--. 3 boincer umatlas 220277788 Oct 10 13:07 EVNT.46676267._001159.pool.root.1
[2025-10-11 06:10:53] -rw-r--r--. 3 boincer umatlas 220277788 Oct 10 13:07 ATLAS.root_0
[2025-10-11 06:10:53] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 13:07 shared
[2025-10-11 06:10:53] -rw-r--r--. 2 boincer umatlas    569675 Oct 10 13:07 input.tar.gz
[2025-10-11 06:10:53] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 13:07 start_atlas.sh
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas         0 Oct 10 13:07 boinc_lockfile
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 19:49 pandaJob.out
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas    975525 Oct 10 19:49 agis_schedconf.cvmfs.json
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas      6657 Oct 11 06:04 init_data.xml
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas 190235124 Oct 11 06:07 HITS.46676269._027592.pool.root.1
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas       531 Oct 11 06:07 boinc_task_state.xml
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas      1057 Oct 11 06:08 memory_monitor_summary.json
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas   1560580 Oct 11 06:09 agis_ddmendpoints.agis.ALL.json
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas    747436 Oct 11 06:09 log.46676269._027592.job.log.tgz.1
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas        96 Oct 11 06:09 pilot_heartbeat.json
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas      7846 Oct 11 06:09 heartbeat.json
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 06:10 boinc_mmap_file
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas        28 Oct 11 06:10 wrapper_checkpoint.txt
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas      5009 Oct 11 06:10 pilotlog.txt
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas   4524788 Oct 11 06:10 log.46676269._027592.job.log.1
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas       357 Oct 11 06:10 output.list
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas       620 Oct 11 06:10 runtime_log
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas   5294080 Oct 11 06:10 result.tar.gz
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas      8774 Oct 11 06:10 runtime_log.err
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas       786 Oct 11 06:10 dckLDm4gER8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNYbNDmUACrJm.diag
[2025-10-11 06:10:53] -rw-r--r--. 1 boincer umatlas     23354 Oct 11 06:10 stderr.txt
[2025-10-11 06:10:53] HITS file was successfully produced:
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas 190235124 Oct 11 06:07 shared/HITS.pool.root.1
[2025-10-11 06:10:53]  *** Contents of shared directory: ***
[2025-10-11 06:10:53] total 406648
[2025-10-11 06:10:53] -rw-r--r--. 3 boincer umatlas 220277788 Oct 10 13:07 ATLAS.root_0
[2025-10-11 06:10:53] -rw-r--r--. 2 boincer umatlas    569675 Oct 10 13:07 input.tar.gz
[2025-10-11 06:10:53] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 13:07 start_atlas.sh
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas 190235124 Oct 11 06:07 HITS.pool.root.1
[2025-10-11 06:10:53] -rw-------. 1 boincer umatlas   5294080 Oct 11 06:10 result.tar.gz
06:10:55 (363672): run_atlas exited; CPU time 51824.867960
06:10:55 (363672): called boinc_finish(0)

</stderr_txt>
]]>

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