Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-10 21:03:26 (16692): vboxwrapper version 26210
2025-10-10 21:03:26 (16692): BOINC client version: 7.16.20
2025-10-10 21:03:26 (16692): Detected: VirtualBox VboxManage Interface (Version: 6.1.40)
2025-10-10 21:03:26 (16692): Successfully copied 'init_data.xml' to the shared directory.
2025-10-10 21:03:27 (16692): Create VM. (boinc_8fe6930b0537cb97, slot#1)
2025-10-10 21:03:27 (16692): Setting Memory Size for VM. (4600MB)
2025-10-10 21:03:27 (16692): Setting CPU Count for VM. (6)
2025-10-10 21:03:28 (16692): Setting Chipset Options for VM.
2025-10-10 21:03:28 (16692): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-10 21:03:28 (16692): Setting Boot Options for VM.
2025-10-10 21:03:29 (16692): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-10 21:03:29 (16692): Enabling VM Network Access.
2025-10-10 21:03:29 (16692): Disabling USB Support for VM.
2025-10-10 21:03:30 (16692): Disabling COM Port Support for VM.
2025-10-10 21:03:30 (16692): Disabling LPT Port Support for VM.
2025-10-10 21:03:30 (16692): Disabling Audio Support for VM.
2025-10-10 21:03:30 (16692): Disabling Clipboard Support for VM.
2025-10-10 21:03:31 (16692): Disabling Drag and Drop Support for VM.
2025-10-10 21:03:31 (16692): Adding storage controller(s) to VM.
2025-10-10 21:03:31 (16692): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-10 21:03:32 (16692): Adding VirtualBox Guest Additions to VM.
2025-10-10 21:03:32 (16692): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-10 21:03:32 (16692): forwarding host port 56730 to guest port 80
2025-10-10 21:03:32 (16692): Enabling remote desktop for VM.
2025-10-10 21:03:33 (16692): Required extension pack not installed, remote desktop not enabled.
2025-10-10 21:03:33 (16692): Enabling shared directory for VM.
2025-10-10 21:03:33 (16692): Starting VM using VBoxManage interface. (boinc_8fe6930b0537cb97, slot#1)
2025-10-10 21:03:40 (16692): Successfully started VM. (PID = '6808')
2025-10-10 21:03:40 (16692): Reporting VM Process ID to BOINC.
2025-10-10 21:03:40 (16692): Guest Log: BIOS: VirtualBox 6.1.40
2025-10-10 21:03:40 (16692): Guest Log: CPUID EDX: 0x178bfbff
2025-10-10 21:03:40 (16692): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-10 21:03:40 (16692): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-10 21:03:40 (16692): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-10 21:03:40 (16692): Detected: Web Application Enabled (http://localhost:56730)
2025-10-10 21:03:40 (16692): Preference change detected
2025-10-10 21:03:40 (16692): Setting CPU throttle for VM. (85%)
2025-10-10 21:03:40 (16692): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 21:03:42 (16692): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-10 21:03:42 (16692): Guest Log: BIOS: Booting from Hard Disk...
2025-10-10 21:03:46 (16692): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-10 21:03:46 (16692): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-10 21:03:46 (16692): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-10 21:03:52 (16692): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-10 21:03:52 (16692): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-10 21:04:04 (16692): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-10 21:04:04 (16692): Guest Log: 00:00:00.000319 main     Log opened 2025-10-10T21:04:03.377987000Z
2025-10-10 21:04:04 (16692): Guest Log: 00:00:00.000467 main     OS Product: Linux
2025-10-10 21:04:04 (16692): Guest Log: 00:00:00.000524 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-10 21:04:04 (16692): Guest Log: 00:00:00.000576 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-10 21:04:04 (16692): Guest Log: 00:00:00.000628 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-10 21:04:04 (16692): Guest Log: 00:00:00.000630 main     Process ID: 1352
2025-10-10 21:04:04 (16692): Guest Log: 00:00:00.000631 main     Package type: LINUX_64BITS_GENERIC
2025-10-10 21:04:04 (16692): Guest Log: 00:00:00.002475 main     5.2.32 r132073 started. Verbose level = 0
2025-10-10 21:04:05 (16692): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-10 21:04:05 (16692): Guest Log: [INFO] Mounting shared directory
2025-10-10 21:04:05 (16692): Guest Log: [INFO] Checking for init_data.xml
2025-10-10 21:04:13 (16692): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-10 21:04:13 (16692): Guest Log: [INFO] Detected branch: prod
2025-10-10 21:04:14 (16692): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-10 21:04:14 (16692): Guest Log: Copying input files
2025-10-10 21:04:14 (16692): Guest Log: 00:00:10.005732 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 389 245 336 000ns (GuestNow=1 760 097 854 137 508 000 ns GuestLast=1 760 130 243 382 844 000 ns fSetTimeLastLoop=true )
2025-10-10 21:04:16 (16692): Guest Log: Copied input files into RunAtlas.
2025-10-10 21:04:16 (16692): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-10 21:04:16 (16692): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-10 21:04:16 (16692): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-10 21:04:16 (16692): Guest Log: Further information can be found at the LHC@home message board.
2025-10-10 21:05:14 (16692): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-10 21:05:15 (16692): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-10 21:05:15 (16692): Guest Log: 2.6.3.0 1632 1 30152 151545 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-10 21:05:16 (16692): Guest Log: copied the webapp to /var/www
2025-10-10 21:05:16 (16692): Guest Log: ATHENA_PROC_NUMBER=6
2025-10-10 21:05:16 (16692): Guest Log: ATHENA_CORE_NUMBER=6
2025-10-10 21:05:17 (16692): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-10 21:05:17 (16692): Guest Log:  *** Starting ATLAS job. (PandaID=6837365264 taskID=46676269) ***
2025-10-10 22:43:45 (16692): Status Report: Elapsed Time: '6000.000000'
2025-10-10 22:43:45 (16692): Status Report: CPU Time: '21896.921875'
2025-10-11 00:23:50 (16692): Status Report: Elapsed Time: '12000.000000'
2025-10-11 00:23:50 (16692): Status Report: CPU Time: '48966.937500'
2025-10-11 01:02:49 (16692): Preference change detected
2025-10-11 01:02:49 (16692): Setting CPU throttle for VM. (85%)
2025-10-11 01:02:49 (16692): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 02:03:55 (16692): Status Report: Elapsed Time: '18000.000000'
2025-10-11 02:03:55 (16692): Status Report: CPU Time: '75974.375000'
2025-10-11 03:44:00 (16692): Status Report: Elapsed Time: '24000.000000'
2025-10-11 03:44:00 (16692): Status Report: CPU Time: '103052.562500'
2025-10-11 04:45:14 (16692): Guest Log:  *** Job finished ***
2025-10-11 04:45:14 (16692): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:44:52,481 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:44:52,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:07,549 | INFO     | [monitor] cgroup control has ended
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:07,789 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031366248256)>', '<ExcThread(monitor, started 140030915876608)>']
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:08,618 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:08,619 | INFO     | [monitor] control thread has ended
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:12,795 | INFO     | all workflow threads have been joined
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:12,796 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:12,796 | INFO     | traces error code: 0
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:12,796 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:12,929 [wrapper] ==== pilot stdout END ====
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:12,939 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:12,946 [wrapper] pilotpid: 6059
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:12,975 [wrapper] Pilot exit status: 0
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:13,286 [wrapper] pandaids: 6837365264
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:13,342 [wrapper] cleanup supervisor_pilot 27045 6060
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:13,357 [wrapper] Test setup, not cleaning
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:13,365 [wrapper] apfmon messages muted
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:13,372 [wrapper] ==== wrapper stdout END ====
2025-10-11 04:45:14 (16692): Guest Log: 2025-10-10 19:45:13,379 [wrapper] ==== wrapper stderr END ====
2025-10-11 04:45:14 (16692): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 04:45:14 (16692): Guest Log:     "exeErrorCode": 0,
2025-10-11 04:45:14 (16692): Guest Log:     "exeErrorDiag": "",
2025-10-11 04:45:14 (16692): Guest Log:     "pilotErrorCode": 0,
2025-10-11 04:45:14 (16692): Guest Log:     "pilotErrorDiag": "",
2025-10-11 04:45:14 (16692): Guest Log:  *** Listing of results directory ***
2025-10-11 04:45:14 (16692): Guest Log: total 193796
2025-10-11 04:45:14 (16692): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct  9 22:39 pilot3.tar.gz
2025-10-11 04:45:14 (16692): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  9 22:45 queuedata.json
2025-10-11 04:45:14 (16692): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  9 22:47 runpilot2-wrapper.sh
2025-10-11 04:45:14 (16692): Guest Log: -rwxr-xr-x. 1 atlas atlas      5945 Oct 10 12:04 init_data.xml
2025-10-11 04:45:14 (16692): Guest Log: -rwxr-xr-x. 1 atlas atlas    569680 Oct 10 12:04 input.tar.gz
2025-10-11 04:45:14 (16692): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 10 12:04 start_atlas.sh
2025-10-11 04:45:14 (16692): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 12:04 EVNT.46676267._001158.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 04:45:14 (16692): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 10 12:05 pandaJob.out
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas    975517 Oct 10 12:07 agis_schedconf.cvmfs.json
2025-10-11 04:45:14 (16692): Guest Log: drwx------. 5 atlas atlas      4096 Oct 10 12:07 pilot3
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas 186540833 Oct 10 19:43 HITS.46676269._027574.pool.root.1
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas      1032 Oct 10 19:43 memory_monitor_summary.json
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 19:44 agis_ddmendpoints.agis.ALL.json
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas    603298 Oct 10 19:44 log.46676269._027574.job.log.tgz.1
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas      7831 Oct 10 19:44 heartbeat.json
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas        95 Oct 10 19:44 pilot_heartbeat.json
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 10 19:45 pilotlog.txt
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas   3436266 Oct 10 19:45 log.46676269._027574.job.log.1
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 19:45 output.list
2025-10-11 04:45:14 (16692): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 19:45 runtime_log
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas   4055040 Oct 10 19:45 result.tar.gz
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas       673 Oct 10 19:45 f6XMDmnaER8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaXbNDm7XuVBo.diag
2025-10-11 04:45:14 (16692): Guest Log: -rw-r--r--. 1 atlas atlas      8679 Oct 10 19:45 runtime_log.err
2025-10-11 04:45:14 (16692): Guest Log: Looking for outputfile HITS.46676269._027574.pool.root.1
2025-10-11 04:45:14 (16692): Guest Log: HITS file was successfully produced
2025-10-11 04:45:14 (16692): Guest Log: -rw-------. 1 atlas atlas 186540833 Oct 10 19:43 /home/atlas/RunAtlas/HITS.46676269._027574.pool.root.1
2025-10-11 04:45:15 (16692): Guest Log: Successfully finished the ATLAS job!
2025-10-11 04:45:15 (16692): Guest Log: Copying the results back to the shared directory!
2025-10-11 04:45:15 (16692): Guest Log:  *** Contents of shared directory: ***
2025-10-11 04:45:16 (16692): Guest Log: total 400108
2025-10-11 04:45:16 (16692): Guest Log: -rwxrwxrwx. 1 root root 218512127 Oct 10 12:03 ATLAS.root_0
2025-10-11 04:45:16 (16692): Guest Log: -rwxrwxrwx. 1 root root 186540833 Oct 10 19:45 HITS.pool.root.1
2025-10-11 04:45:16 (16692): Guest Log: -rwxrwxrwx. 1 root root      5945 Oct 10 12:03 init_data.xml
2025-10-11 04:45:16 (16692): Guest Log: -rwxrwxrwx. 1 root root    569680 Oct 10 03:55 input.tar.gz
2025-10-11 04:45:16 (16692): Guest Log: -rwxrwxrwx. 1 root root   4055040 Oct 10 19:45 result.tar.gz
2025-10-11 04:45:16 (16692): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 10 03:55 start_atlas.sh
2025-10-11 04:45:16 (16692): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 04:45:16 (16692): VM Completion File Detected.
2025-10-11 04:45:16 (16692): Powering off VM.
2025-10-11 04:45:17 (16692): Successfully stopped VM.
2025-10-11 04:45:17 (16692): Deregistering VM. (boinc_8fe6930b0537cb97, slot#1)
2025-10-11 04:45:17 (16692): Removing network bandwidth throttle group from VM.
2025-10-11 04:45:18 (16692): Removing VM from VirtualBox.
2025-10-11 04:45:23 (16692): called boinc_finish(0)

</stderr_txt>
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