Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-10 18:53:19 (92289): vboxwrapper version 26210
2025-10-10 18:53:19 (92289): BOINC client version: 8.2.5
2025-10-10 18:53:19 (92289): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-10-10 18:53:19 (92289): Detected: Sandbox Configuration Enabled
2025-10-10 18:53:19 (92289): Successfully copied 'init_data.xml' to the shared directory.
2025-10-10 18:53:19 (92289): Create VM. (boinc_96629991085944d4, slot#1)
2025-10-10 18:53:19 (92289): Setting Memory Size for VM. (4400MB)
2025-10-10 18:53:19 (92289): Setting CPU Count for VM. (4)
2025-10-10 18:53:19 (92289): Setting Chipset Options for VM.
2025-10-10 18:53:19 (92289): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-10 18:53:19 (92289): Setting Boot Options for VM.
2025-10-10 18:53:19 (92289): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-10 18:53:19 (92289): Enabling VM Network Access.
2025-10-10 18:53:19 (92289): Disabling USB Support for VM.
2025-10-10 18:53:19 (92289): Disabling COM Port Support for VM.
2025-10-10 18:53:19 (92289): Disabling Audio Support for VM.
2025-10-10 18:53:19 (92289): Disabling Clipboard Support for VM.
2025-10-10 18:53:20 (92289): Disabling Drag and Drop Support for VM.
2025-10-10 18:53:20 (92289): Adding storage controller(s) to VM.
2025-10-10 18:53:20 (92289): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-10 18:53:20 (92289): Adding VirtualBox Guest Additions to VM.
2025-10-10 18:53:20 (92289): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-10 18:53:20 (92289): forwarding host port 58958 to guest port 80
2025-10-10 18:53:20 (92289): Enabling remote desktop for VM.
2025-10-10 18:53:20 (92289): Enabling shared directory for VM.
2025-10-10 18:53:20 (92289): Starting VM using VBoxManage interface. (boinc_96629991085944d4, slot#1)
2025-10-10 18:53:24 (92289): Successfully started VM. (PID = '92368')
2025-10-10 18:53:24 (92289): Reporting VM Process ID to BOINC.
2025-10-10 18:53:24 (92289): Guest Log: BIOS: VirtualBox 7.0.22
2025-10-10 18:53:24 (92289): Guest Log: CPUID EDX: 0x178bfbff
2025-10-10 18:53:24 (92289): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-10 18:53:24 (92289): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-10 18:53:24 (92289): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-10 18:53:24 (92289): Detected: Web Application Enabled (http://localhost:58958)
2025-10-10 18:53:24 (92289): Detected: Remote Desktop Enabled (localhost:58959)
2025-10-10 18:53:24 (92289): Preference change detected
2025-10-10 18:53:24 (92289): Setting CPU throttle for VM. (17%)
2025-10-10 18:53:24 (92289): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 18:53:26 (92289): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-10 18:53:26 (92289): Guest Log: BIOS: Booting from Hard Disk...
2025-10-10 18:53:30 (92289): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-10 18:53:30 (92289): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-10 18:53:30 (92289): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-10 18:53:48 (92289): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-10 18:53:49 (92289): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-10 18:54:28 (92289): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-10 18:54:28 (92289): Guest Log: 00:00:00.000175 main     Log opened 2025-10-10T16:54:26.876030000Z
2025-10-10 18:54:28 (92289): Guest Log: 00:00:00.000290 main     OS Product: Linux
2025-10-10 18:54:28 (92289): Guest Log: 00:00:00.000328 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-10 18:54:28 (92289): Guest Log: 00:00:00.000363 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-10 18:54:28 (92289): Guest Log: 00:00:00.000398 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-10 18:54:28 (92289): Guest Log: 00:00:00.000399 main     Process ID: 1301
2025-10-10 18:54:28 (92289): Guest Log: 00:00:00.000400 main     Package type: LINUX_64BITS_GENERIC
2025-10-10 18:54:28 (92289): Guest Log: 00:00:00.072515 main     5.2.32 r132073 started. Verbose level = 0
2025-10-10 18:54:28 (92289): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-10 18:54:28 (92289): Guest Log: [INFO] Mounting shared directory
2025-10-10 18:54:28 (92289): Guest Log: [INFO] Checking for init_data.xml
2025-10-10 18:54:41 (92289): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-10 18:54:41 (92289): Guest Log: [INFO] Detected branch: prod
2025-10-10 18:54:42 (92289): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-10 18:54:42 (92289): Guest Log: Copying input files
2025-10-10 18:54:52 (92289): Guest Log: Copied input files into RunAtlas.
2025-10-10 18:54:52 (92289): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-10 18:54:52 (92289): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-10 18:54:53 (92289): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-10 18:54:53 (92289): Guest Log: Further information can be found at the LHC@home message board.
2025-10-10 18:55:03 (92289): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-10 18:55:04 (92289): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-10 18:55:04 (92289): Guest Log: 2.6.3.0 1582 0 30176 151555 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-10 18:55:07 (92289): Guest Log: copied the webapp to /var/www
2025-10-10 18:55:07 (92289): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-10 18:55:07 (92289): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-10 18:55:07 (92289): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-10 18:55:08 (92289): Guest Log:  *** Starting ATLAS job. (PandaID=6837377706 taskID=46676269) ***
2025-10-10 20:32:54 (92289): Status Report: Elapsed Time: '6000.000000'
2025-10-10 20:32:54 (92289): Status Report: CPU Time: '12319.320000'
2025-10-10 21:06:06 (92289): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 22:06:06 (92289): Guest Log: 02:11:21.970666 timesync vgsvcTimeSyncWorker: Radical host time change: 3 662 026 000 000ns (HostNow=1 760 126 758 425 000 000 ns HostLast=1 760 123 096 399 000 000 ns)
2025-10-10 22:06:06 (92289): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 22:06:16 (92289): Guest Log: 02:11:32.059292 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 619 925 643 000ns (GuestNow=1 760 126 768 642 906 000 ns GuestLast=1 760 123 148 717 263 000 ns fSetTimeLastLoop=true )
2025-10-10 22:27:18 (92289): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 23:27:16 (92289): Preference change detected
2025-10-10 23:27:16 (92289): Setting CPU throttle for VM. (13%)
2025-10-10 23:27:16 (92289): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 23:27:17 (92289): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 23:27:20 (92289): Guest Log: 02:32:34.291629 timesync vgsvcTimeSyncWorker: Radical host time change: 3 601 472 000 000ns (HostNow=1 760 131 588 067 000 000 ns HostLast=1 760 127 986 595 000 000 ns)
2025-10-10 23:27:31 (92289): Guest Log: 02:32:44.303546 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 567 672 453 000ns (GuestNow=1 760 131 598 313 160 000 ns GuestLast=1 760 128 030 640 707 000 ns fSetTimeLastLoop=true )
2025-10-11 00:12:29 (92289): Status Report: Elapsed Time: '12000.000000'
2025-10-11 00:12:29 (92289): Status Report: CPU Time: '28085.620000'
2025-10-11 00:47:41 (92289): Guest Log:  *** Job finished ***
2025-10-11 00:47:41 (92289): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 00:47:41 (92289): Guest Log: 2025-10-10 22:46:27,081 | INFO     | all workflow threads have been joined
2025-10-11 00:47:41 (92289): Guest Log: 2025-10-10 22:46:27,081 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 00:47:41 (92289): Guest Log: 2025-10-10 22:46:27,081 | INFO     | traces error code: 0
2025-10-11 00:47:41 (92289): Guest Log: 2025-10-10 22:46:27,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 00:47:41 (92289): Guest Log: 2025-10-10 22:46:34,443 | INFO     | PID=6022 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-11 00:47:41 (92289): Guest Log: 2025-10-10 22:46:34,444 | INFO     | found 0 job(s) in 20 queues
2025-10-11 00:47:41 (92289): Guest Log: 2025-10-10 22:46:34,444 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 00:47:41 (92289): Guest Log: 2025-10-10 22:46:34,444 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 00:47:41 (92289): Guest Log: 2025-10-10 22:46:34,444 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 00:47:42 (92289): Guest Log: 2025-10-10 22:46:34,444 | INFO     | [monitor] control thread has ended
2025-10-11 00:47:42 (92289): Guest Log: 2025-10-10 22:46:35,495 [wrapper] ==== pilot stdout END ====
2025-10-11 00:47:42 (92289): Guest Log: 2025-10-10 22:46:35,590 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 00:47:42 (92289): Guest Log: 2025-10-10 22:46:35,687 [wrapper] pilotpid: 6022
2025-10-11 00:47:42 (92289): Guest Log: 2025-10-10 22:46:35,790 [wrapper] Pilot exit status: 0
2025-10-11 00:47:42 (92289): Guest Log: 2025-10-10 22:46:36,118 [wrapper] pandaids: 6837377706
2025-10-11 00:47:42 (92289): Guest Log: 2025-10-10 22:46:36,734 [wrapper] cleanup supervisor_pilot 12133 6023
2025-10-11 00:47:42 (92289): Guest Log: 2025-10-10 22:46:36,832 [wrapper] Test setup, not cleaning
2025-10-11 00:47:42 (92289): Guest Log: 2025-10-10 22:46:36,843 [wrapper] apfmon messages muted
2025-10-11 00:47:42 (92289): Guest Log: 2025-10-10 22:46:36,940 [wrapper] ==== wrapper stdout END ====
2025-10-11 00:47:42 (92289): Guest Log: 2025-10-10 22:46:37,030 [wrapper] ==== wrapper stderr END ====
2025-10-11 00:47:42 (92289): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 00:47:42 (92289): Guest Log:     "exeErrorCode": 0,
2025-10-11 00:47:42 (92289): Guest Log:     "exeErrorDiag": "",
2025-10-11 00:47:42 (92289): Guest Log:     "pilotErrorCode": 0,
2025-10-11 00:47:42 (92289): Guest Log:     "pilotErrorDiag": "",
2025-10-11 00:47:42 (92289): Guest Log:  *** Listing of results directory ***
2025-10-11 00:47:42 (92289): Guest Log: total 199316
2025-10-11 00:47:42 (92289): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 10 00:42 pilot3.tar.gz
2025-10-11 00:47:42 (92289): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 10 01:01 queuedata.json
2025-10-11 00:47:42 (92289): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 10 01:02 runpilot2-wrapper.sh
2025-10-11 00:47:42 (92289): Guest Log: -rw-r-----. 1 atlas atlas     15120 Oct 10 16:54 start_atlas.sh
2025-10-11 00:47:42 (92289): Guest Log: -rw-r-----. 1 atlas atlas    569680 Oct 10 16:54 input.tar.gz
2025-10-11 00:47:42 (92289): Guest Log: -rw-r--r--. 1 atlas atlas      8244 Oct 10 16:54 init_data.xml
2025-10-11 00:47:42 (92289): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 16:54 EVNT.46676267._001200.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 00:47:42 (92289): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 10 16:55 pandaJob.out
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas    975525 Oct 10 16:59 agis_schedconf.cvmfs.json
2025-10-11 00:47:42 (92289): Guest Log: drwx------. 5 atlas atlas      4096 Oct 10 17:00 pilot3
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas 196831822 Oct 10 22:39 HITS.46676269._029413.pool.root.1
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas      1035 Oct 10 22:41 memory_monitor_summary.json
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 22:42 agis_ddmendpoints.agis.ALL.json
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas    360416 Oct 10 22:42 log.46676269._029413.job.log.tgz.1
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas      7833 Oct 10 22:46 heartbeat.json
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas        97 Oct 10 22:46 pilot_heartbeat.json
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas       744 Oct 10 22:46 pilotlog.txt
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas   1356609 Oct 10 22:46 log.46676269._029413.job.log.1
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 22:46 output.list
2025-10-11 00:47:42 (92289): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 22:46 runtime_log
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas   1740800 Oct 10 22:46 result.tar.gz
2025-10-11 00:47:42 (92289): Guest Log: -rw-r--r--. 1 atlas atlas      8691 Oct 10 22:46 runtime_log.err
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas       675 Oct 10 22:46 0Q7NDmmhGR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrqbNDmgHW1Tn.diag
2025-10-11 00:47:42 (92289): Guest Log: Looking for outputfile HITS.46676269._029413.pool.root.1
2025-10-11 00:47:42 (92289): Guest Log: HITS file was successfully produced
2025-10-11 00:47:42 (92289): Guest Log: -rw-------. 1 atlas atlas 196831822 Oct 10 22:39 /home/atlas/RunAtlas/HITS.46676269._029413.pool.root.1
2025-10-11 00:47:43 (92289): Guest Log: Successfully finished the ATLAS job!
2025-10-11 00:47:43 (92289): Guest Log: Copying the results back to the shared directory!
2025-10-11 00:47:44 (92289): Guest Log:  *** Contents of shared directory: ***
2025-10-11 00:47:44 (92289): Guest Log: total 217036
2025-10-11 00:47:44 (92289): Guest Log: -rw-rw----. 1 root root 219898741 Oct 10 16:53 ATLAS.root_0
2025-10-11 00:47:44 (92289): Guest Log: -rw-rw-r--. 1 root root      8244 Oct 10 16:53 init_data.xml
2025-10-11 00:47:44 (92289): Guest Log: -rw-rw----. 1 root root    569680 Oct 10 16:53 input.tar.gz
2025-10-11 00:47:44 (92289): Guest Log: -rw-r--r--. 1 root root   1740800 Oct 10  2025 result.tar.gz
2025-10-11 00:47:44 (92289): Guest Log: -rw-rw----. 1 root root     15120 Oct 10 16:53 start_atlas.sh
2025-10-11 00:47:44 (92289): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 00:47:45 (92289): VM Completion File Detected.
2025-10-11 00:47:45 (92289): Powering off VM.
2025-10-11 00:47:45 (92289): Successfully stopped VM.
2025-10-11 00:47:45 (92289): Deregistering VM. (boinc_96629991085944d4, slot#1)
2025-10-11 00:47:45 (92289): Removing network bandwidth throttle group from VM.
2025-10-11 00:47:45 (92289): Removing VM from VirtualBox.
2025-10-11 00:47:50 (92289): called boinc_finish(0)

</stderr_txt>
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