Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:26:30 (10702): wrapper (7.7.26015): starting
22:26:30 (10702): wrapper: running run_atlas (--nthreads 12)
[2025-10-09 22:26:30] Arguments: --nthreads 12
[2025-10-09 22:26:30] Threads: 12
[2025-10-09 22:26:30] Checking for CVMFS
[2025-10-09 22:26:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 22:26:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 22:26:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 22:26:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 22:26:30] 2.11.2.0 2998 35113 88184 151531 0 57 11393849 20275201 1 130560 0 20186848 99.990 1138511 45037 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 22:26:30] CVMFS is ok
[2025-10-09 22:26:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 22:26:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 22:26:30] Further information can be found at the LHC@home message board.
[2025-10-09 22:26:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 22:26:30] Checking for apptainer binary...
[2025-10-09 22:26:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 22:26:30] Running /usr/bin/apptainer --version
[2025-10-09 22:26:30] apptainer version 1.3.2-1.el7
[2025-10-09 22:26:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 22:26:32] c-205-12.aglt2.org
[2025-10-09 22:26:32] apptainer works
[2025-10-09 22:26:32] Set ATHENA_PROC_NUMBER=12
[2025-10-09 22:26:32] Set ATHENA_CORE_NUMBER=12
[2025-10-09 22:26:32] Starting ATLAS job with PandaID=6837358211
[2025-10-09 22:26:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 23:37:58]  *** The last 200 lines of the pilot log: ***
[2025-10-09 23:37:58]  protocol_id=None
[2025-10-09 23:37:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-09 23:37:58]  replicas=None
[2025-10-09 23:37:58]  scope=mc23_13p6TeV
[2025-10-09 23:37:58]  status=None
[2025-10-09 23:37:58]  status_code=0
[2025-10-09 23:37:58]  storage_token=
[2025-10-09 23:37:58]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837358211/log.46676269._024173.job.log.tgz.1
[2025-10-09 23:37:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/4a/log.46676269._024173.job.log.tgz.1
[2025-10-09 23:37:58]  workdir=None
[2025-10-09 23:37:58] ]
[2025-10-09 23:37:58] 2025-10-10 03:37:20,163 | INFO     | transferring file log.46676269._024173.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837358211/log.46676269._024173.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-09 23:37:58] 2025-10-10 03:37:20,164 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837358211/log.46676269._024173.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._024173.job
[2025-10-09 23:37:58] 2025-10-10 03:37:20,187 | INFO     | adding to output.list: log.46676269._024173.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/4a/log.46676269._024173.job.log.tg
[2025-10-09 23:37:58] 2025-10-10 03:37:20,188 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 23:37:58] 2025-10-10 03:37:20,188 | INFO     | summary of transferred files:
[2025-10-09 23:37:58] 2025-10-10 03:37:20,188 | INFO     |  -- lfn=log.46676269._024173.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 23:37:58] 2025-10-10 03:37:20,188 | INFO     | stage-out finished correctly
[2025-10-09 23:37:58] 2025-10-10 03:37:20,272 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 23:37:58] 2025-10-10 03:37:20,989 | INFO     | time since job start (4233s) is within the limit (172800.0s)
[2025-10-09 23:37:58] 2025-10-10 03:37:21,100 | INFO     | job 6837358211 has state=finished
[2025-10-09 23:37:58] 2025-10-10 03:37:21,100 | INFO     | preparing for final server update for job 6837358211 in state='finished'
[2025-10-09 23:37:58] 2025-10-10 03:37:21,100 | INFO     | this job has now completed (state=finished)
[2025-10-09 23:37:58] 2025-10-10 03:37:21,101 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 23:37:58] 2025-10-10 03:37:21,101 | INFO     | log transfer has been attempted: DONE
[2025-10-09 23:37:58] 2025-10-10 03:37:21,101 | INFO     | job 6837358211 has finished - writing final server update
[2025-10-09 23:37:58] 2025-10-10 03:37:21,101 | INFO     | total number of processed events: 400 (read)
[2025-10-09 23:37:58] 2025-10-10 03:37:21,102 | INFO     | executing command: lscpu
[2025-10-09 23:37:58] 2025-10-10 03:37:21,130 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 23:37:58] 2025-10-10 03:37:22,994 | INFO     | time since job start (4235s) is within the limit (172800.0s)
[2025-10-09 23:37:58] 2025-10-10 03:37:23,483 | WARNING  | process 22484 can no longer be monitored (due to stat problems) - aborting
[2025-10-09 23:37:58] 2025-10-10 03:37:23,483 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837358211/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 23:37:58] 2025-10-10 03:37:23,573 | INFO     | number of running child processes to parent process 22484: 1
[2025-10-09 23:37:58] 2025-10-10 03:37:23,573 | INFO     | maximum number of monitored processes: 6
[2025-10-09 23:37:58] 2025-10-10 03:37:24,115 | INFO     | PID=14584 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 23:37:58] 2025-10-10 03:37:25,115 | INFO     | time since job start (4238s) is within the limit (172800.0s)
[2025-10-09 23:37:58] 2025-10-10 03:37:25,806 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-09 23:37:58] 2025-10-10 03:37:25,809 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-09 23:37:58] 2025-10-10 03:37:25,812 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837358211/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 23:37:58] 2025-10-10 03:37:25,812 | INFO     | extracted standard info from prmon json
[2025-10-09 23:37:58] 2025-10-10 03:37:25,812 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 23:37:58] 2025-10-10 03:37:25,812 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 23:37:58] 2025-10-10 03:37:25,813 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 23:37:58] 2025-10-10 03:37:25,813 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 23:37:58] 2025-10-10 03:37:25,815 | INFO     | fitting pss+swap vs Time
[2025-10-09 23:37:58] 2025-10-10 03:37:25,815 | INFO     | sum of square deviations: 73882315.5
[2025-10-09 23:37:58] 2025-10-10 03:37:25,815 | INFO     | sum of deviations: -6057474947.999998
[2025-10-09 23:37:58] 2025-10-10 03:37:25,815 | INFO     | mean x: 1760065400.5
[2025-10-09 23:37:58] 2025-10-10 03:37:25,816 | INFO     | mean y: 2907996.7419354836
[2025-10-09 23:37:58] 2025-10-10 03:37:25,816 | INFO     | -- intersect: 144307427937.92236
[2025-10-09 23:37:58] 2025-10-10 03:37:25,816 | INFO     | intersect: 144307427937.92236
[2025-10-09 23:37:58] 2025-10-10 03:37:25,816 | INFO     | chi2: 0.06028136830668655
[2025-10-09 23:37:58] 2025-10-10 03:37:25,816 | INFO     | -- intersect: 144307427937.92236
[2025-10-09 23:37:58] 2025-10-10 03:37:25,816 | INFO     | current memory leak: -81.99 B/s (using 62 data points, chi2=0.06)
[2025-10-09 23:37:58] 2025-10-10 03:37:25,817 | INFO     | could have reported an average CPU frequency of 2024 MHz (6 samples)
[2025-10-09 23:37:58] 2025-10-10 03:37:25,817 | INFO     | ..............................
[2025-10-09 23:37:58] 2025-10-10 03:37:25,817 | INFO     | . Timing measurements:
[2025-10-09 23:37:58] 2025-10-10 03:37:25,817 | INFO     | . get job = 0 s
[2025-10-09 23:37:58] 2025-10-10 03:37:25,817 | INFO     | . initial setup = 2 s
[2025-10-09 23:37:58] 2025-10-10 03:37:25,817 | INFO     | . payload setup = 6 s
[2025-10-09 23:37:58] 2025-10-10 03:37:25,817 | INFO     | . stage-in = 0 s
[2025-10-09 23:37:58] 2025-10-10 03:37:25,818 | INFO     | . payload execution = 4205 s
[2025-10-09 23:37:58] 2025-10-10 03:37:25,818 | INFO     | . stage-out = 0 s
[2025-10-09 23:37:58] 2025-10-10 03:37:25,818 | INFO     | . log creation = 0 s
[2025-10-09 23:37:58] 2025-10-10 03:37:25,818 | INFO     | ..............................
[2025-10-09 23:37:58] 2025-10-10 03:37:25,900 | INFO     | 
[2025-10-09 23:37:58] 2025-10-10 03:37:25,900 | INFO     | job summary report
[2025-10-09 23:37:58] 2025-10-10 03:37:25,900 | INFO     | --------------------------------------------------
[2025-10-09 23:37:58] 2025-10-10 03:37:25,900 | INFO     | PanDA job id: 6837358211
[2025-10-09 23:37:58] 2025-10-10 03:37:25,901 | INFO     | task id: 46676269
[2025-10-09 23:37:58] 2025-10-10 03:37:25,901 | INFO     | errors: (none)
[2025-10-09 23:37:58] 2025-10-10 03:37:25,901 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 23:37:58] 2025-10-10 03:37:25,901 | INFO     | pilot state: finished 
[2025-10-09 23:37:58] 2025-10-10 03:37:25,901 | INFO     | transexitcode: 0
[2025-10-09 23:37:58] 2025-10-10 03:37:25,901 | INFO     | exeerrorcode: 0
[2025-10-09 23:37:58] 2025-10-10 03:37:25,901 | INFO     | exeerrordiag: 
[2025-10-09 23:37:58] 2025-10-10 03:37:25,901 | INFO     | exitcode: 0
[2025-10-09 23:37:58] 2025-10-10 03:37:25,901 | INFO     | exitmsg: OK
[2025-10-09 23:37:58] 2025-10-10 03:37:25,901 | INFO     | cpuconsumptiontime: 45789 s
[2025-10-09 23:37:58] 2025-10-10 03:37:25,902 | INFO     | nevents: 400
[2025-10-09 23:37:58] 2025-10-10 03:37:25,902 | INFO     | neventsw: 0
[2025-10-09 23:37:58] 2025-10-10 03:37:25,902 | INFO     | pid: 22484
[2025-10-09 23:37:58] 2025-10-10 03:37:25,902 | INFO     | pgrp: 22484
[2025-10-09 23:37:58] 2025-10-10 03:37:25,902 | INFO     | corecount: 12
[2025-10-09 23:37:58] 2025-10-10 03:37:25,902 | INFO     | event service: False
[2025-10-09 23:37:58] 2025-10-10 03:37:25,903 | INFO     | sizes: {0: 2348684, 1: 2348883, 5: 2349145, 11: 2349201, 4216: 2375097, 4217: 2384279, 4223: 2384417}
[2025-10-09 23:37:58] 2025-10-10 03:37:25,903 | INFO     | --------------------------------------------------
[2025-10-09 23:37:58] 2025-10-10 03:37:25,903 | INFO     | 
[2025-10-09 23:37:58] 2025-10-10 03:37:25,903 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-09 23:37:58] 2025-10-10 03:37:25,931 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,931 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,931 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,931 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,931 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,932 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,932 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,932 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,932 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,932 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,932 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,933 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,933 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,933 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,933 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,933 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,933 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,934 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 23:37:58] 2025-10-10 03:37:25,934 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,934 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 23:37:58] 2025-10-10 03:37:25,934 | INFO     | job 6837358211 has completed (purged errors)
[2025-10-09 23:37:58] 2025-10-10 03:37:25,934 | INFO     | overall cleanup function is called
[2025-10-09 23:37:58] 2025-10-10 03:37:26,943 | INFO     | --- collectZombieJob: --- 10, [22484]
[2025-10-09 23:37:58] 2025-10-10 03:37:26,943 | INFO     | zombie collector waiting for pid 22484
[2025-10-09 23:37:58] 2025-10-10 03:37:26,943 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 23:37:58] 2025-10-10 03:37:26,943 | INFO     | collected zombie processes
[2025-10-09 23:37:58] 2025-10-10 03:37:26,943 | INFO     | will attempt to kill all subprocesses of pid=22484
[2025-10-09 23:37:58] 2025-10-10 03:37:27,036 | INFO     | process IDs to be killed: [22484] (in reverse order)
[2025-10-09 23:37:58] 2025-10-10 03:37:27,090 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 23:37:58] 2025-10-10 03:37:27,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 23:37:58] 2025-10-10 03:37:27,094 | INFO     | did not find any defunct processes belonging to 22484
[2025-10-09 23:37:58] 2025-10-10 03:37:27,097 | INFO     | did not find any defunct processes belonging to 22484
[2025-10-09 23:37:58] 2025-10-10 03:37:27,097 | INFO     | ready for new job
[2025-10-09 23:37:58] 2025-10-10 03:37:27,097 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 23:37:58] 2025-10-10 03:37:27,099 | INFO     | ***************************************
[2025-10-09 23:37:58] 2025-10-10 03:37:27,099 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 23:37:58] 2025-10-10 03:37:27,099 | INFO     | ***************************************
[2025-10-09 23:37:58] 2025-10-10 03:37:27,099 | INFO     | 
[2025-10-09 23:37:58] 2025-10-10 03:37:27,100 | INFO     | architecture information:
[2025-10-09 23:37:58] 2025-10-10 03:37:27,100 | INFO     | executing command: cat /etc/os-release
[2025-10-09 23:37:58] 2025-10-10 03:37:27,117 | INFO     | cat /etc/os-release:
[2025-10-09 23:37:58] NAME="CentOS Linux"
[2025-10-09 23:37:58] VERSION="7 (Core)"
[2025-10-09 23:37:58] ID="centos"
[2025-10-09 23:37:58] ID_LIKE="rhel fedora"
[2025-10-09 23:37:58] VERSION_ID="7"
[2025-10-09 23:37:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 23:37:58] ANSI_COLOR="0;31"
[2025-10-09 23:37:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 23:37:58] HOME_URL="https://www.centos.org/"
[2025-10-09 23:37:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 23:37:58] 
[2025-10-09 23:37:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 23:37:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 23:37:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 23:37:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 23:37:58] 
[2025-10-09 23:37:58] 2025-10-10 03:37:27,117 | INFO     | ***************************************
[2025-10-09 23:37:58] 2025-10-10 03:37:27,620 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-09 23:37:58] 2025-10-10 03:37:27,638 | INFO     | sufficient remaining disk space (29356982272 B)
[2025-10-09 23:37:58] 2025-10-10 03:37:27,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 23:37:58] 2025-10-10 03:37:27,639 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 23:37:58] 2025-10-10 03:37:27,639 | INFO     | update_server=False
[2025-10-09 23:37:58] 2025-10-10 03:37:27,639 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 23:37:58] 2025-10-10 03:37:27,639 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 23:37:58] 2025-10-10 03:37:27,639 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 23:37:58] 2025-10-10 03:37:27,640 | INFO     | aborting loop
[2025-10-09 23:37:58] 2025-10-10 03:37:28,044 | INFO     | all data control threads have been joined
[2025-10-09 23:37:58] 2025-10-10 03:37:28,239 | INFO     | all payload control threads have been joined
[2025-10-09 23:37:58] 2025-10-10 03:37:28,282 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 23:37:58] 2025-10-10 03:37:28,397 | INFO     | all job control threads have been joined
[2025-10-09 23:37:58] 2025-10-10 03:37:28,644 | INFO     | [job] retrieve thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:28,645 | INFO     | [job] queue monitor thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:28,646 | INFO     | [job] job monitor thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:28,688 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:28,746 | INFO     | [data] copytool_in thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:28,996 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:29,049 | INFO     | [data] control thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:29,174 | INFO     | [payload] failed_post thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:29,245 | INFO     | [payload] control thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:29,403 | INFO     | [job] control thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:29,624 | INFO     | [job] validate thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:29,881 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:29,956 | INFO     | [payload] validate_post thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:30,287 | INFO     | [data] copytool_out thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:30,869 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 23:37:58] 2025-10-10 03:37:34,875 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:37,984 | INFO     | job.realtimelogging is not enabled
[2025-10-09 23:37:58] 2025-10-10 03:37:38,990 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 23:37:58] 2025-10-10 03:37:53,248 | INFO     | [monitor] cgroup control has ended
[2025-10-09 23:37:58] 2025-10-10 03:37:53,416 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139987621459776)>', '<ExcThread(monitor, started 139986741491456)>']
[2025-10-09 23:37:58] 2025-10-10 03:37:58,316 | INFO     | PID=14584 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 23:37:58] 2025-10-10 03:37:58,317 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 23:37:58] 2025-10-10 03:37:58,317 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 23:37:58] 2025-10-10 03:37:58,317 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 23:37:58] 2025-10-10 03:37:58,317 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 23:37:58] 2025-10-10 03:37:58,318 | INFO     | [monitor] control thread has ended
[2025-10-09 23:37:58] 2025-10-10 03:37:58,422 | INFO     | all workflow threads have been joined
[2025-10-09 23:37:58] 2025-10-10 03:37:58,422 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 23:37:58] 2025-10-10 03:37:58,423 | INFO     | traces error code: 0
[2025-10-09 23:37:58] 2025-10-10 03:37:58,423 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 23:37:58] 2025-10-10 03:37:58,514 [wrapper] ==== pilot stdout END ====
[2025-10-09 23:37:58] 2025-10-10 03:37:58,518 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 23:37:58] 2025-10-10 03:37:58,522 [wrapper] pilotpid: 14584
[2025-10-09 23:37:58] 2025-10-10 03:37:58,525 [wrapper] Pilot exit status: 0
[2025-10-09 23:37:58] 2025-10-10 03:37:58,541 [wrapper] pandaids: 6837358211
[2025-10-09 23:37:58] 2025-10-10 03:37:58,579 [wrapper] cleanup supervisor_pilot 29933 14585
[2025-10-09 23:37:58] 2025-10-10 03:37:58,583 [wrapper] Test setup, not cleaning
[2025-10-09 23:37:58] 2025-10-10 03:37:58,587 [wrapper] apfmon messages muted
[2025-10-09 23:37:58] 2025-10-10 03:37:58,591 [wrapper] ==== wrapper stdout END ====
[2025-10-09 23:37:58] 2025-10-10 03:37:58,595 [wrapper] ==== wrapper stderr END ====
[2025-10-09 23:37:58]  *** Error codes and diagnostics ***
[2025-10-09 23:37:58]     "exeErrorCode": 0,
[2025-10-09 23:37:58]     "exeErrorDiag": "",
[2025-10-09 23:37:58]     "pilotErrorCode": 0,
[2025-10-09 23:37:58]     "pilotErrorDiag": "",
[2025-10-09 23:37:58]  *** Listing of results directory ***
[2025-10-09 23:37:58] total 416964
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas    557409 Oct  9 14:06 pilot3.tar.gz
[2025-10-09 23:37:58] -rwx------ 1 boincer umatlas     36292 Oct  9 14:27 runpilot2-wrapper.sh
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas      5112 Oct  9 14:27 queuedata.json
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas       100 Oct  9 22:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 23:37:58] -rwxr-xr-x 1 boincer umatlas      7986 Oct  9 22:26 run_atlas
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas       105 Oct  9 22:26 job.xml
[2025-10-09 23:37:58] -rw-r--r-- 2 boincer umatlas 221870705 Oct  9 22:26 EVNT.46676267._000991.pool.root.1
[2025-10-09 23:37:58] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 22:26 start_atlas.sh
[2025-10-09 23:37:58] drwxrwx--x 2 boincer umatlas      4096 Oct  9 22:26 shared
[2025-10-09 23:37:58] -rw-r--r-- 2 boincer umatlas    569680 Oct  9 22:26 input.tar.gz
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas         0 Oct  9 22:26 boinc_lockfile
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas      2549 Oct  9 22:26 pandaJob.out
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas    975454 Oct  9 22:26 agis_schedconf.cvmfs.json
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas   1560580 Oct  9 22:26 agis_ddmendpoints.agis.ALL.json
[2025-10-09 23:37:58] drwx------ 5 boincer umatlas      4096 Oct  9 22:26 pilot3
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas      5953 Oct  9 23:31 init_data.xml
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas 199189307 Oct  9 23:36 HITS.46676269._024173.pool.root.1
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas       529 Oct  9 23:36 boinc_task_state.xml
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas      1062 Oct  9 23:37 memory_monitor_summary.json
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas    387204 Oct  9 23:37 log.46676269._024173.job.log.tgz.1
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas      7859 Oct  9 23:37 heartbeat.json
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas      8192 Oct  9 23:37 boinc_mmap_file
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas        27 Oct  9 23:37 wrapper_checkpoint.txt
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas        95 Oct  9 23:37 pilot_heartbeat.json
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas      4818 Oct  9 23:37 pilotlog.txt
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas    618562 Oct  9 23:37 log.46676269._024173.job.log.1
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas       357 Oct  9 23:37 output.list
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas       620 Oct  9 23:37 runtime_log
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas   1024000 Oct  9 23:37 result.tar.gz
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas      8705 Oct  9 23:37 runtime_log.err
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas       659 Oct  9 23:37 hBSKDmuXAR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm6VOMDmicgasm.diag
[2025-10-09 23:37:58] -rw-r--r-- 1 boincer umatlas     21844 Oct  9 23:37 stderr.txt
[2025-10-09 23:37:58] HITS file was successfully produced:
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas 199189307 Oct  9 23:36 shared/HITS.pool.root.1
[2025-10-09 23:37:58]  *** Contents of shared directory: ***
[2025-10-09 23:37:58] total 412772
[2025-10-09 23:37:58] -rw-r--r-- 2 boincer umatlas 221870705 Oct  9 22:26 ATLAS.root_0
[2025-10-09 23:37:58] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 22:26 start_atlas.sh
[2025-10-09 23:37:58] -rw-r--r-- 2 boincer umatlas    569680 Oct  9 22:26 input.tar.gz
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas 199189307 Oct  9 23:36 HITS.pool.root.1
[2025-10-09 23:37:58] -rw------- 1 boincer umatlas   1024000 Oct  9 23:37 result.tar.gz
23:38:00 (10702): run_atlas exited; CPU time 45790.606699
23:38:00 (10702): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN