Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:04:06 (1504353): wrapper (7.7.26015): starting
22:04:06 (1504353): wrapper: running run_atlas (--nthreads 12)
[2025-10-09 22:04:06] Arguments: --nthreads 12
[2025-10-09 22:04:06] Threads: 12
[2025-10-09 22:04:06] Checking for CVMFS
[2025-10-09 22:04:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 22:04:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 22:04:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 22:04:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 22:04:07] 2.13.2.0 135553 689 97780 151529 2 412 20701289 32503809 9302 16776704 0 12733628 99.968 1278174 50618 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 22:04:07] CVMFS is ok
[2025-10-09 22:04:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 22:04:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 22:04:07] Further information can be found at the LHC@home message board.
[2025-10-09 22:04:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 22:04:07] Checking for apptainer binary...
[2025-10-09 22:04:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 22:04:07] Running /usr/bin/apptainer --version
[2025-10-09 22:04:07] apptainer version 1.4.3-1.el9
[2025-10-09 22:04:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 22:04:07] c8-7-2.aglt2.org
[2025-10-09 22:04:07] apptainer works
[2025-10-09 22:04:07] Set ATHENA_PROC_NUMBER=12
[2025-10-09 22:04:07] Set ATHENA_CORE_NUMBER=12
[2025-10-09 22:04:07] Starting ATLAS job with PandaID=6837355909
[2025-10-09 22:04:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 22:36:25]  *** The last 200 lines of the pilot log: ***
[2025-10-09 22:36:25]  scope=mc23_13p6TeV
[2025-10-09 22:36:25]  status=None
[2025-10-09 22:36:25]  status_code=0
[2025-10-09 22:36:25]  storage_token=
[2025-10-09 22:36:25]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6837355909/log.46676269._024044.job.log.tgz.1
[2025-10-09 22:36:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/a4/log.46676269._024044.job.log.tgz.1
[2025-10-09 22:36:25]  workdir=None
[2025-10-09 22:36:25] ]
[2025-10-09 22:36:25] 2025-10-10 02:35:12,476 | INFO     | transferring file log.46676269._024044.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6837355909/log.46676269._024044.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-09 22:36:25] 2025-10-10 02:35:12,476 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6837355909/log.46676269._024044.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._024044.job
[2025-10-09 22:36:25] 2025-10-10 02:35:12,494 | INFO     | adding to output.list: log.46676269._024044.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/a4/log.46676269._024044.job.log.tg
[2025-10-09 22:36:25] 2025-10-10 02:35:12,494 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 22:36:25] 2025-10-10 02:35:12,494 | INFO     | summary of transferred files:
[2025-10-09 22:36:25] 2025-10-10 02:35:12,494 | INFO     |  -- lfn=log.46676269._024044.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 22:36:25] 2025-10-10 02:35:12,494 | INFO     | stage-out finished correctly
[2025-10-09 22:36:25] 2025-10-10 02:35:13,315 | INFO     | time since job start (1857s) is within the limit (172800.0s)
[2025-10-09 22:36:25] 2025-10-10 02:35:13,429 | WARNING  | process 1516908 can no longer be monitored (due to stat problems) - aborting
[2025-10-09 22:36:25] 2025-10-10 02:35:13,429 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6837355909/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 22:36:25] 2025-10-10 02:35:13,794 | INFO     | number of running child processes to parent process 1516908: 1
[2025-10-09 22:36:25] 2025-10-10 02:35:13,794 | INFO     | maximum number of monitored processes: 6
[2025-10-09 22:36:25] 2025-10-10 02:35:13,835 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 22:36:25] 2025-10-10 02:35:13,890 | INFO     | job 6837355909 has state=finished
[2025-10-09 22:36:25] 2025-10-10 02:35:13,890 | INFO     | preparing for final server update for job 6837355909 in state='finished'
[2025-10-09 22:36:25] 2025-10-10 02:35:14,020 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-09 22:36:25] 2025-10-10 02:35:14,020 | INFO     | this job has now completed (state=finished)
[2025-10-09 22:36:25] 2025-10-10 02:35:14,020 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 22:36:25] 2025-10-10 02:35:14,020 | INFO     | log transfer has been attempted: DONE
[2025-10-09 22:36:25] 2025-10-10 02:35:14,020 | INFO     | job 6837355909 has finished - writing final server update
[2025-10-09 22:36:25] 2025-10-10 02:35:14,020 | INFO     | total number of processed events: 400 (read)
[2025-10-09 22:36:25] 2025-10-10 02:35:14,020 | INFO     | executing command: lscpu
[2025-10-09 22:36:25] 2025-10-10 02:35:14,083 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 22:36:25] 2025-10-10 02:35:15,321 | INFO     | time since job start (1859s) is within the limit (172800.0s)
[2025-10-09 22:36:25] 2025-10-10 02:35:16,297 | INFO     | monitor loop #139: job 0:6837355909 is in state 'finished'
[2025-10-09 22:36:25] 2025-10-10 02:35:16,298 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 22:36:25] 2025-10-10 02:35:17,326 | INFO     | time since job start (1861s) is within the limit (172800.0s)
[2025-10-09 22:36:25] 2025-10-10 02:35:17,645 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-09 22:36:25] 2025-10-10 02:35:17,650 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3632.5649062499997
[2025-10-09 22:36:25] 2025-10-10 02:35:17,674 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6837355909/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 22:36:25] 2025-10-10 02:35:17,675 | INFO     | extracted standard info from prmon json
[2025-10-09 22:36:25] 2025-10-10 02:35:17,675 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 22:36:25] 2025-10-10 02:35:17,675 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 22:36:25] 2025-10-10 02:35:17,675 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 22:36:25] 2025-10-10 02:35:17,675 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 22:36:25] 2025-10-10 02:35:17,676 | INFO     | fitting pss+swap vs Time
[2025-10-09 22:36:25] 2025-10-10 02:35:17,676 | INFO     | sum of square deviations: 3765652.0
[2025-10-09 22:36:25] 2025-10-10 02:35:17,676 | INFO     | sum of deviations: 40775755.0
[2025-10-09 22:36:25] 2025-10-10 02:35:17,676 | INFO     | mean x: 1760062856.0
[2025-10-09 22:36:25] 2025-10-10 02:35:17,676 | INFO     | mean y: 2324173.217391304
[2025-10-09 22:36:25] 2025-10-10 02:35:17,676 | INFO     | -- intersect: -19056232432.87799
[2025-10-09 22:36:25] 2025-10-10 02:35:17,676 | INFO     | intersect: -19056232432.87799
[2025-10-09 22:36:25] 2025-10-10 02:35:17,676 | INFO     | chi2: 0.0057016443204831084
[2025-10-09 22:36:25] 2025-10-10 02:35:17,676 | INFO     | -- intersect: -19056232432.87799
[2025-10-09 22:36:25] 2025-10-10 02:35:17,676 | INFO     | current memory leak: 10.83 B/s (using 23 data points, chi2=0.01)
[2025-10-09 22:36:25] 2025-10-10 02:35:17,676 | INFO     | could have reported an average CPU frequency of 3646 MHz (5 samples)
[2025-10-09 22:36:25] 2025-10-10 02:35:17,677 | INFO     | ..............................
[2025-10-09 22:36:25] 2025-10-10 02:35:17,677 | INFO     | . Timing measurements:
[2025-10-09 22:36:25] 2025-10-10 02:35:17,677 | INFO     | . get job = 0 s
[2025-10-09 22:36:25] 2025-10-10 02:35:17,677 | INFO     | . initial setup = 2 s
[2025-10-09 22:36:25] 2025-10-10 02:35:17,677 | INFO     | . payload setup = 4 s
[2025-10-09 22:36:25] 2025-10-10 02:35:17,677 | INFO     | . stage-in = 0 s
[2025-10-09 22:36:25] 2025-10-10 02:35:17,677 | INFO     | . payload execution = 1831 s
[2025-10-09 22:36:25] 2025-10-10 02:35:17,677 | INFO     | . stage-out = 0 s
[2025-10-09 22:36:25] 2025-10-10 02:35:17,677 | INFO     | . log creation = 0 s
[2025-10-09 22:36:25] 2025-10-10 02:35:17,677 | INFO     | ..............................
[2025-10-09 22:36:25] 2025-10-10 02:35:17,728 | INFO     | 
[2025-10-09 22:36:25] 2025-10-10 02:35:17,728 | INFO     | job summary report
[2025-10-09 22:36:25] 2025-10-10 02:35:17,728 | INFO     | --------------------------------------------------
[2025-10-09 22:36:25] 2025-10-10 02:35:17,728 | INFO     | PanDA job id: 6837355909
[2025-10-09 22:36:25] 2025-10-10 02:35:17,728 | INFO     | task id: 46676269
[2025-10-09 22:36:25] 2025-10-10 02:35:17,728 | INFO     | errors: (none)
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | pilot state: finished 
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | transexitcode: 0
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | exeerrorcode: 0
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | exeerrordiag: 
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | exitcode: 0
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | exitmsg: OK
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | cpuconsumptiontime: 19795 s
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | nevents: 400
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | neventsw: 0
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | pid: 1516908
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | pgrp: 1516908
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | corecount: 12
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | event service: False
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | sizes: {0: 2348027, 1: 2348883, 5: 2349145, 11: 2349201, 1840: 2374148, 1842: 2383146, 1843: 2383330, 1847: 2383556}
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | --------------------------------------------------
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | 
[2025-10-09 22:36:25] 2025-10-10 02:35:17,729 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,746 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,747 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,747 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 22:36:25] 2025-10-10 02:35:17,747 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,747 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 22:36:25] 2025-10-10 02:35:17,747 | INFO     | job 6837355909 has completed (purged errors)
[2025-10-09 22:36:25] 2025-10-10 02:35:17,747 | INFO     | overall cleanup function is called
[2025-10-09 22:36:25] 2025-10-10 02:35:18,755 | INFO     | --- collectZombieJob: --- 10, [1516908]
[2025-10-09 22:36:25] 2025-10-10 02:35:18,755 | INFO     | zombie collector waiting for pid 1516908
[2025-10-09 22:36:25] 2025-10-10 02:35:18,755 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 22:36:25] 2025-10-10 02:35:18,755 | INFO     | collected zombie processes
[2025-10-09 22:36:25] 2025-10-10 02:35:18,755 | INFO     | will attempt to kill all subprocesses of pid=1516908
[2025-10-09 22:36:25] 2025-10-10 02:35:19,122 | INFO     | process IDs to be killed: [1516908] (in reverse order)
[2025-10-09 22:36:25] 2025-10-10 02:35:19,251 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 22:36:25] 2025-10-10 02:35:19,251 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 22:36:25] 2025-10-10 02:35:19,269 | INFO     | did not find any defunct processes belonging to 1516908
[2025-10-09 22:36:25] 2025-10-10 02:35:19,281 | INFO     | did not find any defunct processes belonging to 1516908
[2025-10-09 22:36:25] 2025-10-10 02:35:19,282 | INFO     | ready for new job
[2025-10-09 22:36:25] 2025-10-10 02:35:19,282 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 22:36:25] 2025-10-10 02:35:19,283 | INFO     | ***************************************
[2025-10-09 22:36:25] 2025-10-10 02:35:19,283 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 22:36:25] 2025-10-10 02:35:19,283 | INFO     | ***************************************
[2025-10-09 22:36:25] 2025-10-10 02:35:19,283 | INFO     | 
[2025-10-09 22:36:25] 2025-10-10 02:35:19,299 | INFO     | architecture information:
[2025-10-09 22:36:25] 2025-10-10 02:35:19,299 | INFO     | executing command: cat /etc/os-release
[2025-10-09 22:36:25] 2025-10-10 02:35:19,313 | INFO     | cat /etc/os-release:
[2025-10-09 22:36:25] NAME="CentOS Linux"
[2025-10-09 22:36:25] VERSION="7 (Core)"
[2025-10-09 22:36:25] ID="centos"
[2025-10-09 22:36:25] ID_LIKE="rhel fedora"
[2025-10-09 22:36:25] VERSION_ID="7"
[2025-10-09 22:36:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 22:36:25] ANSI_COLOR="0;31"
[2025-10-09 22:36:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 22:36:25] HOME_URL="https://www.centos.org/"
[2025-10-09 22:36:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 22:36:25] 
[2025-10-09 22:36:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 22:36:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 22:36:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 22:36:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 22:36:25] 
[2025-10-09 22:36:25] 2025-10-10 02:35:19,313 | INFO     | ***************************************
[2025-10-09 22:36:25] 2025-10-10 02:35:19,816 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-09 22:36:25] 2025-10-10 02:35:19,830 | INFO     | sufficient remaining disk space (91009056768 B)
[2025-10-09 22:36:25] 2025-10-10 02:35:19,830 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 22:36:25] 2025-10-10 02:35:19,831 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 22:36:25] 2025-10-10 02:35:19,831 | INFO     | update_server=False
[2025-10-09 22:36:25] 2025-10-10 02:35:19,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 22:36:25] 2025-10-10 02:35:19,831 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 22:36:25] 2025-10-10 02:35:19,831 | INFO     | aborting loop
[2025-10-09 22:36:25] 2025-10-10 02:35:19,837 | INFO     | all data control threads have been joined
[2025-10-09 22:36:25] 2025-10-10 02:35:19,896 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 22:36:25] 2025-10-10 02:35:20,556 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 22:36:25] 2025-10-10 02:35:20,739 | INFO     | all job control threads have been joined
[2025-10-09 22:36:25] 2025-10-10 02:35:20,819 | INFO     | all payload control threads have been joined
[2025-10-09 22:36:25] 2025-10-10 02:35:20,836 | INFO     | [job] retrieve thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:20,837 | INFO     | [job] job monitor thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:20,843 | INFO     | [data] control thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:21,023 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:21,158 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:21,423 | INFO     | [payload] validate_post thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:21,562 | INFO     | [payload] failed_post thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:21,745 | INFO     | [job] control thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:21,824 | INFO     | [payload] control thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:21,868 | INFO     | [data] copytool_in thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:22,252 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:22,321 | INFO     | [job] validate thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:22,562 | INFO     | [data] copytool_out thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:22,736 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 22:36:25] 2025-10-10 02:35:23,739 | INFO     | [job] queue monitor thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:23,901 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:29,921 | INFO     | job.realtimelogging is not enabled
[2025-10-09 22:36:25] 2025-10-10 02:35:30,926 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 22:36:25] 2025-10-10 02:35:50,873 | INFO     | PID=1508124 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 22:36:25] 2025-10-10 02:35:50,873 | INFO     | .. there are 10 such processes running
[2025-10-09 22:36:25] 2025-10-10 02:35:50,873 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 22:36:25] 2025-10-10 02:35:50,873 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 22:36:25] 2025-10-10 02:35:50,873 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 22:36:25] 2025-10-10 02:36:18,668 | INFO     | [monitor] cgroup control has ended
[2025-10-09 22:36:25] 2025-10-10 02:36:20,037 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424072980288)>', '<ExcThread(monitor, started 140423729235712)>']
[2025-10-09 22:36:25] 2025-10-10 02:36:21,018 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 22:36:25] 2025-10-10 02:36:21,019 | INFO     | [monitor] control thread has ended
[2025-10-09 22:36:25] 2025-10-10 02:36:25,062 | INFO     | all workflow threads have been joined
[2025-10-09 22:36:25] 2025-10-10 02:36:25,062 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 22:36:25] 2025-10-10 02:36:25,063 | INFO     | traces error code: 0
[2025-10-09 22:36:25] 2025-10-10 02:36:25,063 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 22:36:25] 2025-10-10 02:36:25,160 [wrapper] ==== pilot stdout END ====
[2025-10-09 22:36:25] 2025-10-10 02:36:25,163 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 22:36:25] 2025-10-10 02:36:25,164 [wrapper] pilotpid: 1508124
[2025-10-09 22:36:25] 2025-10-10 02:36:25,166 [wrapper] Pilot exit status: 0
[2025-10-09 22:36:25] 2025-10-10 02:36:25,173 [wrapper] pandaids: 6837355909
[2025-10-09 22:36:25] 2025-10-10 02:36:25,273 [wrapper] cleanup supervisor_pilot 1756242 1508125
[2025-10-09 22:36:25] 2025-10-10 02:36:25,276 [wrapper] Test setup, not cleaning
[2025-10-09 22:36:25] 2025-10-10 02:36:25,278 [wrapper] apfmon messages muted
[2025-10-09 22:36:25] 2025-10-10 02:36:25,280 [wrapper] ==== wrapper stdout END ====
[2025-10-09 22:36:25] 2025-10-10 02:36:25,281 [wrapper] ==== wrapper stderr END ====
[2025-10-09 22:36:25]  *** Error codes and diagnostics ***
[2025-10-09 22:36:25]     "exeErrorCode": 0,
[2025-10-09 22:36:25]     "exeErrorDiag": "",
[2025-10-09 22:36:25]     "pilotErrorCode": 0,
[2025-10-09 22:36:25]     "pilotErrorDiag": "",
[2025-10-09 22:36:25]  *** Listing of results directory ***
[2025-10-09 22:36:25] total 403452
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 14:06 pilot3.tar.gz
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 14:13 queuedata.json
[2025-10-09 22:36:25] -rwx------. 1 boincer umatlas     36292 Oct  9 14:13 runpilot2-wrapper.sh
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas       100 Oct  9 22:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 22:36:25] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 22:04 run_atlas
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas       105 Oct  9 22:04 job.xml
[2025-10-09 22:36:25] -rw-r--r--. 2 boincer umatlas 220588937 Oct  9 22:04 EVNT.46676267._000986.pool.root.1
[2025-10-09 22:36:25] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 22:04 start_atlas.sh
[2025-10-09 22:36:25] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 22:04 shared
[2025-10-09 22:36:25] -rw-r--r--. 2 boincer umatlas    569679 Oct  9 22:04 input.tar.gz
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas         0 Oct  9 22:04 boinc_lockfile
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas      2549 Oct  9 22:04 pandaJob.out
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas    975454 Oct  9 22:04 agis_schedconf.cvmfs.json
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas   1560580 Oct  9 22:04 agis_ddmendpoints.agis.ALL.json
[2025-10-09 22:36:25] drwx------. 5 boincer umatlas      4096 Oct  9 22:04 pilot3
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas      7161 Oct  9 22:29 init_data.xml
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas 187334417 Oct  9 22:34 HITS.46676269._024044.pool.root.1
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas        95 Oct  9 22:34 pilot_heartbeat.json
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas       529 Oct  9 22:34 boinc_task_state.xml
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas      1029 Oct  9 22:35 memory_monitor_summary.json
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas    350330 Oct  9 22:35 log.46676269._024044.job.log.tgz.1
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas      7773 Oct  9 22:35 heartbeat.json
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 22:36 boinc_mmap_file
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas        27 Oct  9 22:36 wrapper_checkpoint.txt
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas      4896 Oct  9 22:36 pilotlog.txt
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas    306052 Oct  9 22:36 log.46676269._024044.job.log.1
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas       357 Oct  9 22:36 output.list
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas       620 Oct  9 22:36 runtime_log
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas    675840 Oct  9 22:36 result.tar.gz
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas      8695 Oct  9 22:36 runtime_log.err
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas       651 Oct  9 22:36 0rVLDmkJAR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmtUOMDmq8w2Jn.diag
[2025-10-09 22:36:25] -rw-r--r--. 1 boincer umatlas     21923 Oct  9 22:36 stderr.txt
[2025-10-09 22:36:25] HITS file was successfully produced:
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas 187334417 Oct  9 22:34 shared/HITS.pool.root.1
[2025-10-09 22:36:25]  *** Contents of shared directory: ***
[2025-10-09 22:36:25] total 399604
[2025-10-09 22:36:25] -rw-r--r--. 2 boincer umatlas 220588937 Oct  9 22:04 ATLAS.root_0
[2025-10-09 22:36:25] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 22:04 start_atlas.sh
[2025-10-09 22:36:25] -rw-r--r--. 2 boincer umatlas    569679 Oct  9 22:04 input.tar.gz
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas 187334417 Oct  9 22:34 HITS.pool.root.1
[2025-10-09 22:36:25] -rw-------. 1 boincer umatlas    675840 Oct  9 22:36 result.tar.gz
22:36:27 (1504353): run_atlas exited; CPU time 19820.716813
22:36:27 (1504353): called boinc_finish(0)

</stderr_txt>
]]>

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