Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:00:39 (18043): wrapper (7.7.26015): starting
22:00:39 (18043): wrapper: running run_atlas (--nthreads 12)
[2025-10-09 22:00:39] Arguments: --nthreads 12
[2025-10-09 22:00:39] Threads: 12
[2025-10-09 22:00:39] Checking for CVMFS
[2025-10-09 22:00:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 22:00:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 22:00:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 22:00:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 22:00:39] 2.11.2.0 2947 219328 95144 151529 0 57 11221697 20275201 1 130560 1 105013811 99.983 13172199 11141 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 22:00:39] CVMFS is ok
[2025-10-09 22:00:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 22:00:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 22:00:39] Further information can be found at the LHC@home message board.
[2025-10-09 22:00:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 22:00:39] Checking for apptainer binary...
[2025-10-09 22:00:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 22:00:39] Running /usr/bin/apptainer --version
[2025-10-09 22:00:39] apptainer version 1.3.2-1.el7
[2025-10-09 22:00:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 22:00:41] c-205-18.aglt2.org
[2025-10-09 22:00:41] apptainer works
[2025-10-09 22:00:41] Set ATHENA_PROC_NUMBER=12
[2025-10-09 22:00:41] Set ATHENA_CORE_NUMBER=12
[2025-10-09 22:00:41] Starting ATLAS job with PandaID=6837354122
[2025-10-09 22:00:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 23:12:25]  *** The last 200 lines of the pilot log: ***
[2025-10-09 23:12:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-09 23:12:25]  replicas=None
[2025-10-09 23:12:25]  scope=mc23_13p6TeV
[2025-10-09 23:12:25]  status=None
[2025-10-09 23:12:25]  status_code=0
[2025-10-09 23:12:25]  storage_token=
[2025-10-09 23:12:25]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837354122/log.46676269._023146.job.log.tgz.1
[2025-10-09 23:12:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/eb/log.46676269._023146.job.log.tgz.1
[2025-10-09 23:12:25]  workdir=None
[2025-10-09 23:12:25] ]
[2025-10-09 23:12:25] 2025-10-10 03:11:44,866 | INFO     | transferring file log.46676269._023146.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837354122/log.46676269._023146.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-09 23:12:25] 2025-10-10 03:11:44,866 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837354122/log.46676269._023146.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._023146.job
[2025-10-09 23:12:25] 2025-10-10 03:11:44,889 | INFO     | adding to output.list: log.46676269._023146.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/eb/log.46676269._023146.job.log.tg
[2025-10-09 23:12:25] 2025-10-10 03:11:44,890 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 23:12:25] 2025-10-10 03:11:44,891 | INFO     | summary of transferred files:
[2025-10-09 23:12:25] 2025-10-10 03:11:44,891 | INFO     |  -- lfn=log.46676269._023146.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 23:12:25] 2025-10-10 03:11:44,891 | INFO     | stage-out finished correctly
[2025-10-09 23:12:25] 2025-10-10 03:11:45,526 | INFO     | time since job start (4249s) is within the limit (172800.0s)
[2025-10-09 23:12:25] 2025-10-10 03:11:46,482 | INFO     | monitor loop #319: job 0:6837354122 is in state 'finished'
[2025-10-09 23:12:25] 2025-10-10 03:11:46,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 23:12:25] 2025-10-10 03:11:47,460 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 23:12:25] 2025-10-10 03:11:47,543 | INFO     | time since job start (4251s) is within the limit (172800.0s)
[2025-10-09 23:12:25] 2025-10-10 03:11:47,543 | INFO     | job 6837354122 has state=finished
[2025-10-09 23:12:25] 2025-10-10 03:11:47,544 | INFO     | preparing for final server update for job 6837354122 in state='finished'
[2025-10-09 23:12:25] 2025-10-10 03:11:47,544 | INFO     | this job has now completed (state=finished)
[2025-10-09 23:12:25] 2025-10-10 03:11:47,544 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 23:12:25] 2025-10-10 03:11:47,545 | INFO     | log transfer has been attempted: DONE
[2025-10-09 23:12:25] 2025-10-10 03:11:47,545 | INFO     | job 6837354122 has finished - writing final server update
[2025-10-09 23:12:25] 2025-10-10 03:11:47,545 | INFO     | total number of processed events: 400 (read)
[2025-10-09 23:12:25] 2025-10-10 03:11:47,548 | INFO     | executing command: lscpu
[2025-10-09 23:12:25] 2025-10-10 03:11:47,576 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 23:12:25] 2025-10-10 03:11:48,998 | INFO     | monitor loop #320: job 0:6837354122 is in state 'finished'
[2025-10-09 23:12:25] 2025-10-10 03:11:48,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 23:12:25] 2025-10-10 03:11:49,549 | INFO     | time since job start (4253s) is within the limit (172800.0s)
[2025-10-09 23:12:25] 2025-10-10 03:11:51,501 | INFO     | monitor loop #321: job 0:6837354122 is in state 'finished'
[2025-10-09 23:12:25] 2025-10-10 03:11:51,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 23:12:25] 2025-10-10 03:11:51,554 | INFO     | time since job start (4255s) is within the limit (172800.0s)
[2025-10-09 23:12:25] 2025-10-10 03:11:52,533 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-09 23:12:25] 2025-10-10 03:11:52,537 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-09 23:12:25] 2025-10-10 03:11:52,539 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837354122/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 23:12:25] 2025-10-10 03:11:52,540 | INFO     | extracted standard info from prmon json
[2025-10-09 23:12:25] 2025-10-10 03:11:52,540 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 23:12:25] 2025-10-10 03:11:52,540 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 23:12:25] 2025-10-10 03:11:52,540 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 23:12:25] 2025-10-10 03:11:52,540 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 23:12:25] 2025-10-10 03:11:52,542 | INFO     | fitting pss+swap vs Time
[2025-10-09 23:12:25] 2025-10-10 03:11:52,542 | INFO     | sum of square deviations: 77515872.0
[2025-10-09 23:12:25] 2025-10-10 03:11:52,542 | INFO     | sum of deviations: -224289436.0
[2025-10-09 23:12:25] 2025-10-10 03:11:52,542 | INFO     | mean x: 1760063882.0
[2025-10-09 23:12:25] 2025-10-10 03:11:52,542 | INFO     | mean y: 2675603.5396825396
[2025-10-09 23:12:25] 2025-10-10 03:11:52,543 | INFO     | -- intersect: 5095358240.429203
[2025-10-09 23:12:25] 2025-10-10 03:11:52,543 | INFO     | intersect: 5095358240.429203
[2025-10-09 23:12:25] 2025-10-10 03:11:52,543 | INFO     | chi2: 0.020458536483134754
[2025-10-09 23:12:25] 2025-10-10 03:11:52,543 | INFO     | -- intersect: 5095358240.429203
[2025-10-09 23:12:25] 2025-10-10 03:11:52,543 | INFO     | current memory leak: -2.89 B/s (using 63 data points, chi2=0.02)
[2025-10-09 23:12:25] 2025-10-10 03:11:52,543 | INFO     | could have reported an average CPU frequency of 2028 MHz (6 samples)
[2025-10-09 23:12:25] 2025-10-10 03:11:52,544 | INFO     | ..............................
[2025-10-09 23:12:25] 2025-10-10 03:11:52,544 | INFO     | . Timing measurements:
[2025-10-09 23:12:25] 2025-10-10 03:11:52,544 | INFO     | . get job = 0 s
[2025-10-09 23:12:25] 2025-10-10 03:11:52,544 | INFO     | . initial setup = 2 s
[2025-10-09 23:12:25] 2025-10-10 03:11:52,544 | INFO     | . payload setup = 7 s
[2025-10-09 23:12:25] 2025-10-10 03:11:52,544 | INFO     | . stage-in = 0 s
[2025-10-09 23:12:25] 2025-10-10 03:11:52,544 | INFO     | . payload execution = 4219 s
[2025-10-09 23:12:25] 2025-10-10 03:11:52,544 | INFO     | . stage-out = 0 s
[2025-10-09 23:12:25] 2025-10-10 03:11:52,544 | INFO     | . log creation = 0 s
[2025-10-09 23:12:25] 2025-10-10 03:11:52,545 | INFO     | ..............................
[2025-10-09 23:12:25] 2025-10-10 03:11:52,628 | INFO     | 
[2025-10-09 23:12:25] 2025-10-10 03:11:52,628 | INFO     | job summary report
[2025-10-09 23:12:25] 2025-10-10 03:11:52,628 | INFO     | --------------------------------------------------
[2025-10-09 23:12:25] 2025-10-10 03:11:52,628 | INFO     | PanDA job id: 6837354122
[2025-10-09 23:12:25] 2025-10-10 03:11:52,628 | INFO     | task id: 46676269
[2025-10-09 23:12:25] 2025-10-10 03:11:52,628 | INFO     | errors: (none)
[2025-10-09 23:12:25] 2025-10-10 03:11:52,628 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 23:12:25] 2025-10-10 03:11:52,629 | INFO     | pilot state: finished 
[2025-10-09 23:12:25] 2025-10-10 03:11:52,629 | INFO     | transexitcode: 0
[2025-10-09 23:12:25] 2025-10-10 03:11:52,629 | INFO     | exeerrorcode: 0
[2025-10-09 23:12:25] 2025-10-10 03:11:52,629 | INFO     | exeerrordiag: 
[2025-10-09 23:12:25] 2025-10-10 03:11:52,629 | INFO     | exitcode: 0
[2025-10-09 23:12:25] 2025-10-10 03:11:52,629 | INFO     | exitmsg: OK
[2025-10-09 23:12:25] 2025-10-10 03:11:52,629 | INFO     | cpuconsumptiontime: 46009 s
[2025-10-09 23:12:25] 2025-10-10 03:11:52,629 | INFO     | nevents: 400
[2025-10-09 23:12:25] 2025-10-10 03:11:52,629 | INFO     | neventsw: 0
[2025-10-09 23:12:25] 2025-10-10 03:11:52,630 | INFO     | pid: 28145
[2025-10-09 23:12:25] 2025-10-10 03:11:52,630 | INFO     | pgrp: 28145
[2025-10-09 23:12:25] 2025-10-10 03:11:52,630 | INFO     | corecount: 12
[2025-10-09 23:12:25] 2025-10-10 03:11:52,630 | INFO     | event service: False
[2025-10-09 23:12:25] 2025-10-10 03:11:52,630 | INFO     | sizes: {0: 2348684, 1: 2348883, 6: 2349145, 11: 2349173, 4230: 2375098, 4231: 2375097, 4232: 2384279, 4235: 2384335, 4240: 2384529}
[2025-10-09 23:12:25] 2025-10-10 03:11:52,630 | INFO     | --------------------------------------------------
[2025-10-09 23:12:25] 2025-10-10 03:11:52,630 | INFO     | 
[2025-10-09 23:12:25] 2025-10-10 03:11:52,630 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-09 23:12:25] 2025-10-10 03:11:52,652 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,653 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,653 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,653 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,653 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,653 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,653 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,654 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,654 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,654 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,654 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,654 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,654 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,655 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,655 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,655 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,655 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,655 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 23:12:25] 2025-10-10 03:11:52,656 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,656 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 23:12:25] 2025-10-10 03:11:52,656 | INFO     | job 6837354122 has completed (purged errors)
[2025-10-09 23:12:25] 2025-10-10 03:11:52,656 | INFO     | overall cleanup function is called
[2025-10-09 23:12:25] 2025-10-10 03:11:53,664 | INFO     | --- collectZombieJob: --- 10, [28145]
[2025-10-09 23:12:25] 2025-10-10 03:11:53,665 | INFO     | zombie collector waiting for pid 28145
[2025-10-09 23:12:25] 2025-10-10 03:11:53,665 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 23:12:25] 2025-10-10 03:11:53,665 | INFO     | collected zombie processes
[2025-10-09 23:12:25] 2025-10-10 03:11:53,665 | INFO     | will attempt to kill all subprocesses of pid=28145
[2025-10-09 23:12:25] 2025-10-10 03:11:53,756 | INFO     | process IDs to be killed: [28145] (in reverse order)
[2025-10-09 23:12:25] 2025-10-10 03:11:53,805 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 23:12:25] 2025-10-10 03:11:53,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 23:12:25] 2025-10-10 03:11:53,809 | INFO     | did not find any defunct processes belonging to 28145
[2025-10-09 23:12:25] 2025-10-10 03:11:53,811 | INFO     | did not find any defunct processes belonging to 28145
[2025-10-09 23:12:25] 2025-10-10 03:11:53,811 | INFO     | ready for new job
[2025-10-09 23:12:25] 2025-10-10 03:11:53,812 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 23:12:25] 2025-10-10 03:11:53,813 | INFO     | ***************************************
[2025-10-09 23:12:25] 2025-10-10 03:11:53,813 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 23:12:25] 2025-10-10 03:11:53,813 | INFO     | ***************************************
[2025-10-09 23:12:25] 2025-10-10 03:11:53,813 | INFO     | 
[2025-10-09 23:12:25] 2025-10-10 03:11:53,814 | INFO     | architecture information:
[2025-10-09 23:12:25] 2025-10-10 03:11:53,814 | INFO     | executing command: cat /etc/os-release
[2025-10-09 23:12:25] 2025-10-10 03:11:53,830 | INFO     | cat /etc/os-release:
[2025-10-09 23:12:25] NAME="CentOS Linux"
[2025-10-09 23:12:25] VERSION="7 (Core)"
[2025-10-09 23:12:25] ID="centos"
[2025-10-09 23:12:25] ID_LIKE="rhel fedora"
[2025-10-09 23:12:25] VERSION_ID="7"
[2025-10-09 23:12:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 23:12:25] ANSI_COLOR="0;31"
[2025-10-09 23:12:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 23:12:25] HOME_URL="https://www.centos.org/"
[2025-10-09 23:12:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 23:12:25] 
[2025-10-09 23:12:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 23:12:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 23:12:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 23:12:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 23:12:25] 
[2025-10-09 23:12:25] 2025-10-10 03:11:53,830 | INFO     | ***************************************
[2025-10-09 23:12:25] 2025-10-10 03:11:54,333 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-09 23:12:25] 2025-10-10 03:11:54,350 | INFO     | sufficient remaining disk space (29370613760 B)
[2025-10-09 23:12:25] 2025-10-10 03:11:54,351 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 23:12:25] 2025-10-10 03:11:54,351 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 23:12:25] 2025-10-10 03:11:54,351 | INFO     | update_server=False
[2025-10-09 23:12:25] 2025-10-10 03:11:54,351 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 23:12:25] 2025-10-10 03:11:54,351 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 23:12:25] 2025-10-10 03:11:54,352 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 23:12:25] 2025-10-10 03:11:54,556 | INFO     | all job control threads have been joined
[2025-10-09 23:12:25] 2025-10-10 03:11:54,568 | INFO     | all payload control threads have been joined
[2025-10-09 23:12:25] 2025-10-10 03:11:54,805 | INFO     | all data control threads have been joined
[2025-10-09 23:12:25] 2025-10-10 03:11:55,016 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 23:12:25] 2025-10-10 03:11:55,017 | INFO     | aborting loop
[2025-10-09 23:12:25] 2025-10-10 03:11:55,357 | INFO     | [job] retrieve thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:55,357 | INFO     | [job] queue monitor thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:55,496 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 23:12:25] 2025-10-10 03:11:55,562 | INFO     | [job] control thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:55,573 | INFO     | [payload] control thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:55,617 | INFO     | [data] copytool_in thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:55,784 | INFO     | [payload] validate_post thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:55,810 | INFO     | [data] control thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:56,022 | INFO     | [job] job monitor thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:56,032 | INFO     | [job] validate thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:56,371 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:56,427 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:56,621 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:56,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:56,837 | INFO     | [payload] failed_post thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:57,502 | INFO     | [data] copytool_out thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:11:58,358 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 23:12:25] 2025-10-10 03:12:03,042 | INFO     | [monitor] cgroup control has ended
[2025-10-09 23:12:25] 2025-10-10 03:12:03,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140448134125376)>', '<ExcThread(monitor, started 140447544489728)>']
[2025-10-09 23:12:25] 2025-10-10 03:12:08,518 | INFO     | all workflow threads have been joined
[2025-10-09 23:12:25] 2025-10-10 03:12:08,518 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 23:12:25] 2025-10-10 03:12:08,518 | INFO     | traces error code: 0
[2025-10-09 23:12:25] 2025-10-10 03:12:08,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 23:12:25] 2025-10-10 03:12:24,825 | INFO     | PID=21713 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 23:12:25] 2025-10-10 03:12:24,825 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 23:12:25] 2025-10-10 03:12:24,825 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 23:12:25] 2025-10-10 03:12:24,825 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 23:12:25] 2025-10-10 03:12:24,825 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 23:12:25] 2025-10-10 03:12:24,826 | INFO     | [monitor] control thread has ended
[2025-10-09 23:12:25] 2025-10-10 03:12:24,912 [wrapper] ==== pilot stdout END ====
[2025-10-09 23:12:25] 2025-10-10 03:12:24,916 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 23:12:25] 2025-10-10 03:12:24,920 [wrapper] pilotpid: 21713
[2025-10-09 23:12:25] 2025-10-10 03:12:24,924 [wrapper] Pilot exit status: 0
[2025-10-09 23:12:25] 2025-10-10 03:12:24,939 [wrapper] pandaids: 6837354122
[2025-10-09 23:12:25] 2025-10-10 03:12:24,980 [wrapper] cleanup supervisor_pilot  2851 21714
[2025-10-09 23:12:25] 2025-10-10 03:12:24,984 [wrapper] Test setup, not cleaning
[2025-10-09 23:12:25] 2025-10-10 03:12:24,988 [wrapper] apfmon messages muted
[2025-10-09 23:12:25] 2025-10-10 03:12:24,992 [wrapper] ==== wrapper stdout END ====
[2025-10-09 23:12:25] 2025-10-10 03:12:24,996 [wrapper] ==== wrapper stderr END ====
[2025-10-09 23:12:25]  *** Error codes and diagnostics ***
[2025-10-09 23:12:25]     "exeErrorCode": 0,
[2025-10-09 23:12:25]     "exeErrorDiag": "",
[2025-10-09 23:12:25]     "pilotErrorCode": 0,
[2025-10-09 23:12:25]     "pilotErrorDiag": "",
[2025-10-09 23:12:25]  *** Listing of results directory ***
[2025-10-09 23:12:25] total 406608
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas    557409 Oct  9 13:04 pilot3.tar.gz
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas      5112 Oct  9 13:09 queuedata.json
[2025-10-09 23:12:25] -rwx------ 1 boincer umatlas     36292 Oct  9 13:10 runpilot2-wrapper.sh
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas       100 Oct  9 22:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 23:12:25] -rwxr-xr-x 1 boincer umatlas      7986 Oct  9 22:00 run_atlas
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas       105 Oct  9 22:00 job.xml
[2025-10-09 23:12:25] -rw-r--r-- 2 boincer umatlas 220771085 Oct  9 22:00 EVNT.46676267._000950.pool.root.1
[2025-10-09 23:12:25] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 22:00 start_atlas.sh
[2025-10-09 23:12:25] drwxrwx--x 2 boincer umatlas      4096 Oct  9 22:00 shared
[2025-10-09 23:12:25] -rw-r--r-- 2 boincer umatlas    569684 Oct  9 22:00 input.tar.gz
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas         0 Oct  9 22:00 boinc_lockfile
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas      2549 Oct  9 22:00 pandaJob.out
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas    975454 Oct  9 22:00 agis_schedconf.cvmfs.json
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas   1560580 Oct  9 22:00 agis_ddmendpoints.agis.ALL.json
[2025-10-09 23:12:25] drwx------ 5 boincer umatlas      4096 Oct  9 22:00 pilot3
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas      5953 Oct  9 23:10 init_data.xml
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas 189681902 Oct  9 23:11 HITS.46676269._023146.pool.root.1
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas       530 Oct  9 23:11 boinc_task_state.xml
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas      1050 Oct  9 23:11 memory_monitor_summary.json
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas    386018 Oct  9 23:11 log.46676269._023146.job.log.tgz.1
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas      7851 Oct  9 23:11 heartbeat.json
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas        95 Oct  9 23:11 pilot_heartbeat.json
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas        27 Oct  9 23:12 wrapper_checkpoint.txt
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas      8192 Oct  9 23:12 boinc_mmap_file
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas       745 Oct  9 23:12 pilotlog.txt
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas    620476 Oct  9 23:12 log.46676269._023146.job.log.1
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas       357 Oct  9 23:12 output.list
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas       620 Oct  9 23:12 runtime_log
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas   1024000 Oct  9 23:12 result.tar.gz
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas       659 Oct  9 23:12 3wtNDm9K9Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmsOOMDmus4pNo.diag
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas      8705 Oct  9 23:12 runtime_log.err
[2025-10-09 23:12:25] -rw-r--r-- 1 boincer umatlas     21897 Oct  9 23:12 stderr.txt
[2025-10-09 23:12:25] HITS file was successfully produced:
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas 189681902 Oct  9 23:11 shared/HITS.pool.root.1
[2025-10-09 23:12:25]  *** Contents of shared directory: ***
[2025-10-09 23:12:25] total 402420
[2025-10-09 23:12:25] -rw-r--r-- 2 boincer umatlas 220771085 Oct  9 22:00 ATLAS.root_0
[2025-10-09 23:12:25] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 22:00 start_atlas.sh
[2025-10-09 23:12:25] -rw-r--r-- 2 boincer umatlas    569684 Oct  9 22:00 input.tar.gz
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas 189681902 Oct  9 23:11 HITS.pool.root.1
[2025-10-09 23:12:25] -rw------- 1 boincer umatlas   1024000 Oct  9 23:12 result.tar.gz
23:12:26 (18043): run_atlas exited; CPU time 45988.638385
23:12:26 (18043): called boinc_finish(0)

</stderr_txt>
]]>

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