Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:17:18 (608662): wrapper (7.7.26015): starting
18:17:18 (608662): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 18:17:18] Arguments: --nthreads 8
[2025-10-09 18:17:18] Threads: 8
[2025-10-09 18:17:18] Checking for CVMFS
[2025-10-09 18:17:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 18:17:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 18:17:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 18:17:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 18:17:21] 2.11.3.0 2143 27894 207192 151528 2 327 41104508 45568000 11558 130560 0 167947500 99.832 88719171 21311 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-09 18:17:21] CVMFS is ok
[2025-10-09 18:17:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 18:17:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 18:17:21] Further information can be found at the LHC@home message board.
[2025-10-09 18:17:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 18:17:21] Checking for apptainer binary...
[2025-10-09 18:17:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 18:17:21] Running /usr/bin/apptainer --version
[2025-10-09 18:17:21] apptainer version 1.4.1-1.el9
[2025-10-09 18:17:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 18:17:22] wns0003.triumf.lcg
[2025-10-09 18:17:22] apptainer works
[2025-10-09 18:17:22] Set ATHENA_PROC_NUMBER=8
[2025-10-09 18:17:22] Set ATHENA_CORE_NUMBER=8
[2025-10-09 18:17:22] Starting ATLAS job with PandaID=6837365152
[2025-10-09 18:17:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 18:23:11]  *** The last 200 lines of the pilot log: ***
[2025-10-09 18:23:11] 2025-10-10 01:22:24,328 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 18:23:11] 2025-10-10 01:22:24,328 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 18:23:11] 2025-10-10 01:22:24,328 | WARNING  | wrong length of table data, x=[1760059162.0], y=[2128.0] (must be same and length>=4)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | ..............................
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . Timing measurements:
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . get job = 0 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . initial setup = 5 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . payload setup = 22 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . stage-in = 0 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . payload execution = 62 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . stage-out = 0 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . log creation = 0 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | ..............................
[2025-10-09 18:23:11] 2025-10-10 01:22:24,330 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-09 18:23:11] 2025-10-10 01:22:24,330 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837365152/pilotlog.txt
[2025-10-09 18:23:11] 2025-10-10 01:22:24,339 | INFO     | time since job start (261s) is within the limit (172800.0s)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,382 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-09 18:23:11] - Log from pilotlog.txt -
[2025-10-09 18:23:11] 2025-10-10 01:22:24,307 | INFO     | extracted standard info from prmon json
[2025-10-09 18:23:11] 2025-10-10 01:22:24,307 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 18:23:11] 2025-10-10 01:22:24,307 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 18:23:11] 2025-10-10 01:22:24,328 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 18:23:11] 2025-10-10 01:22:24,328 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 18:23:11] 2025-10-10 01:22:24,328 | WARNING  | wrong length of table data, x=[1760059162.0], y=[2128.0] (must be same and length>=4)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | ..............................
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . Timing measurements:
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . get job = 0 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . initial setup = 5 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . payload setup = 22 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . stage-in = 0 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . payload execution = 62 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . stage-out = 0 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . log creation = 0 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | ..............................
[2025-10-09 18:23:11] 2025-10-10 01:22:24,330 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-09 18:23:11] 2025-10-10 01:22:24,330 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837365152/pilotlog.txt
[2025-10-09 18:23:11] 2025-10-10 01:22:24,339 | INFO     | time since job start (261s) is within the limit (172800.0s)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,382 | WARNING  | 
[2025-10-09 18:23:11] [begin log extracts]
[2025-10-09 18:23:11] - Log from pilotlog.txt -
[2025-10-09 18:23:11] 2025-10-10 01:22:24,307 | INFO     | extracted standard info from prmon json
[2025-10-09 18:23:11] 2025-10-10 01:22:24,307 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 18:23:11] 2025-10-10 01:22:24,307 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 18:23:11] 2025-10-10 01:22:24,328 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 18:23:11] 2025-10-10 01:22:24,328 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 18:23:11] 2025-10-10 01:22:24,328 | WARNING  | wrong length of table data, x=[1760059162.0], y=[2128.0] (must be same and length>=4)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | ..............................
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . Timing measurements:
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . get job = 0 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . initial setup = 5 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . payload setup = 22 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . stage-in = 0 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . payload execution = 62 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . stage-out = 0 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | . log creation = 0 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,329 | INFO     | ..............................
[2025-10-09 18:23:11] 2025-10-10 01:22:24,330 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-09 18:23:11] 2025-10-10 01:22:24,330 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837365152/pilotlog.txt
[2025-10-09 18:23:11] 2025-10-10 01:22:24,339 | INFO     | time since job start (261s) is within the limit (172800.0s)
[2025-10-09 18:23:11] [end log extracts]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,385 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,386 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-09 18:23:11] 2025-10-10 01:22:24,630 | INFO     | 
[2025-10-09 18:23:11] 2025-10-10 01:22:24,630 | INFO     | job summary report
[2025-10-09 18:23:11] 2025-10-10 01:22:24,630 | INFO     | --------------------------------------------------
[2025-10-09 18:23:11] 2025-10-10 01:22:24,630 | INFO     | PanDA job id: 6837365152
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | task id: 46676269
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-09 18:19:59,669 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | pilot state: failed 
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | transexitcode: 65
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | exeerrorcode: 65
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | exitcode: 65
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | cpuconsumptiontime: 20 s
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | nevents: 0
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | neventsw: 0
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | pid: 619014
[2025-10-09 18:23:11] 2025-10-10 01:22:24,631 | INFO     | pgrp: 619014
[2025-10-09 18:23:11] 2025-10-10 01:22:24,632 | INFO     | corecount: 8
[2025-10-09 18:23:11] 2025-10-10 01:22:24,632 | INFO     | event service: False
[2025-10-09 18:23:11] 2025-10-10 01:22:24,632 | INFO     | sizes: {0: 2348683, 1: 2348882, 12: 2348882, 14: 2349172, 23: 2349200, 88: 2372421, 89: 2372525, 90: 2376845, 93: 2376873, 221: 2377039}
[2025-10-09 18:23:11] 2025-10-10 01:22:24,632 | INFO     | --------------------------------------------------
[2025-10-09 18:23:11] 2025-10-10 01:22:24,632 | INFO     | 
[2025-10-09 18:23:11] 2025-10-10 01:22:24,633 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-09 18:23:11] 2025-10-10 01:22:24,714 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,715 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,715 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,715 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,715 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,715 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,715 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,715 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,715 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,715 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,716 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,716 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,716 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,716 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,716 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,716 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,716 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,716 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,716 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 18:23:11] 2025-10-10 01:22:24,716 | INFO     | job 6837365152 has completed (purged errors)
[2025-10-09 18:23:11] 2025-10-10 01:22:24,717 | INFO     | overall cleanup function is called
[2025-10-09 18:23:11] 2025-10-10 01:22:25,723 | INFO     | --- collectZombieJob: --- 10, [619014]
[2025-10-09 18:23:11] 2025-10-10 01:22:25,723 | INFO     | zombie collector waiting for pid 619014
[2025-10-09 18:23:11] 2025-10-10 01:22:25,723 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 18:23:11] 2025-10-10 01:22:25,723 | INFO     | collected zombie processes
[2025-10-09 18:23:11] 2025-10-10 01:22:25,724 | INFO     | will attempt to kill all subprocesses of pid=619014
[2025-10-09 18:23:11] 2025-10-10 01:22:26,066 | INFO     | process IDs to be killed: [619014] (in reverse order)
[2025-10-09 18:23:11] 2025-10-10 01:22:26,138 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 18:23:11] 2025-10-10 01:22:26,138 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 18:23:11] 2025-10-10 01:22:26,240 | INFO     | did not find any defunct processes belonging to 619014
[2025-10-09 18:23:11] 2025-10-10 01:22:26,281 | INFO     | did not find any defunct processes belonging to 619014
[2025-10-09 18:23:11] 2025-10-10 01:22:26,281 | INFO     | ready for new job
[2025-10-09 18:23:11] 2025-10-10 01:22:26,281 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 18:23:11] 2025-10-10 01:22:26,283 | INFO     | ***************************************
[2025-10-09 18:23:11] 2025-10-10 01:22:26,283 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 18:23:11] 2025-10-10 01:22:26,283 | INFO     | ***************************************
[2025-10-09 18:23:11] 2025-10-10 01:22:26,295 | INFO     | 
[2025-10-09 18:23:11] 2025-10-10 01:22:26,297 | INFO     | architecture information:
[2025-10-09 18:23:11] 2025-10-10 01:22:26,301 | INFO     | executing command: cat /etc/os-release
[2025-10-09 18:23:11] 2025-10-10 01:22:26,319 | INFO     | cat /etc/os-release:
[2025-10-09 18:23:11] NAME="CentOS Linux"
[2025-10-09 18:23:11] VERSION="7 (Core)"
[2025-10-09 18:23:11] ID="centos"
[2025-10-09 18:23:11] ID_LIKE="rhel fedora"
[2025-10-09 18:23:11] VERSION_ID="7"
[2025-10-09 18:23:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 18:23:11] ANSI_COLOR="0;31"
[2025-10-09 18:23:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 18:23:11] HOME_URL="https://www.centos.org/"
[2025-10-09 18:23:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 18:23:11] 
[2025-10-09 18:23:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 18:23:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 18:23:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 18:23:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 18:23:11] 
[2025-10-09 18:23:11] 2025-10-10 01:22:26,319 | INFO     | ***************************************
[2025-10-09 18:23:11] 2025-10-10 01:22:26,827 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-09 18:23:11] 2025-10-10 01:22:26,847 | INFO     | sufficient remaining disk space (1154584936448 B)
[2025-10-09 18:23:11] 2025-10-10 01:22:26,847 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 18:23:11] 2025-10-10 01:22:26,847 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 18:23:11] 2025-10-10 01:22:26,847 | INFO     | update_server=False
[2025-10-09 18:23:11] 2025-10-10 01:22:26,848 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 18:23:11] 2025-10-10 01:22:26,921 | INFO     | all payload control threads have been joined
[2025-10-09 18:23:11] 2025-10-10 01:22:27,091 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 18:23:11] 2025-10-10 01:22:27,091 | INFO     | aborting loop
[2025-10-09 18:23:11] 2025-10-10 01:22:27,106 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 18:23:11] 2025-10-10 01:22:27,853 | INFO     | [job] retrieve thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:27,927 | INFO     | [payload] control thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:27,944 | INFO     | all data control threads have been joined
[2025-10-09 18:23:11] 2025-10-10 01:22:27,956 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:27,992 | INFO     | [payload] failed_post thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:28,018 | INFO     | all job control threads have been joined
[2025-10-09 18:23:11] 2025-10-10 01:22:28,079 | INFO     | [payload] validate_post thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:28,097 | INFO     | [job] job monitor thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:28,310 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:28,400 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:28,476 | INFO     | [data] copytool_in thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:28,829 | INFO     | [job] validate thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:28,867 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 18:23:11] 2025-10-10 01:22:28,883 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:28,950 | INFO     | [data] control thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:29,024 | INFO     | [job] control thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:29,112 | INFO     | [data] copytool_out thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:29,643 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 18:23:11] 2025-10-10 01:22:30,649 | INFO     | [job] queue monitor thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:32,879 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 18:23:11] 2025-10-10 01:22:57,890 | INFO     | PID=612366 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-09 18:23:11] 2025-10-10 01:22:57,890 | INFO     | .. there are 19 such processes running
[2025-10-09 18:23:11] 2025-10-10 01:22:57,890 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 18:23:11] 2025-10-10 01:22:57,890 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 18:23:11] 2025-10-10 01:22:57,890 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 18:23:11] 2025-10-10 01:23:03,384 | INFO     | [monitor] cgroup control has ended
[2025-10-09 18:23:11] 2025-10-10 01:23:05,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648663611200)>', '<ExcThread(monitor, started 140648267101952)>']
[2025-10-09 18:23:11] 2025-10-10 01:23:05,942 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 18:23:11] 2025-10-10 01:23:05,942 | INFO     | [monitor] control thread has ended
[2025-10-09 18:23:11] 2025-10-10 01:23:10,218 | INFO     | all workflow threads have been joined
[2025-10-09 18:23:11] 2025-10-10 01:23:10,219 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 18:23:11] 2025-10-10 01:23:10,220 | INFO     | traces error code: 0
[2025-10-09 18:23:11] 2025-10-10 01:23:10,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 18:23:11] 2025-10-10 01:23:10,515 [wrapper] ==== pilot stdout END ====
[2025-10-09 18:23:11] 2025-10-10 01:23:10,544 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 18:23:11] 2025-10-10 01:23:10,557 [wrapper] pilotpid: 612366
[2025-10-09 18:23:11] 2025-10-10 01:23:10,582 [wrapper] Pilot exit status: 0
[2025-10-09 18:23:11] 2025-10-10 01:23:10,692 [wrapper] pandaids: 6837365152
[2025-10-09 18:23:11] 2025-10-10 01:23:10,813 [wrapper] cleanup supervisor_pilot  612372 612367
[2025-10-09 18:23:11] 2025-10-10 01:23:10,820 [wrapper] Test setup, not cleaning
[2025-10-09 18:23:11] 2025-10-10 01:23:10,840 [wrapper] apfmon messages muted
[2025-10-09 18:23:11] 2025-10-10 01:23:10,869 [wrapper] ==== wrapper stdout END ====
[2025-10-09 18:23:11] 2025-10-10 01:23:10,901 [wrapper] ==== wrapper stderr END ====
[2025-10-09 18:23:11]  *** Error codes and diagnostics ***
[2025-10-09 18:23:11]     "exeErrorCode": 65,
[2025-10-09 18:23:11]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-09 18:23:11]     "pilotErrorCode": 1305,
[2025-10-09 18:23:11]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-09 18:23:11]  *** Listing of results directory ***
[2025-10-09 18:23:11] total 217532
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc    557409 Oct  9 15:24 pilot3.tar.gz
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc      5112 Oct  9 15:35 queuedata.json
[2025-10-09 18:23:11] -rwx------. 1 boinc boinc     36292 Oct  9 15:38 runpilot2-wrapper.sh
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc       100 Oct  9 18:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 18:23:11] -rwxr-xr-x. 1 boinc boinc      7986 Oct  9 18:17 run_atlas
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc       105 Oct  9 18:17 job.xml
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc      6443 Oct  9 18:17 init_data.xml
[2025-10-09 18:23:11] -rw-r--r--. 2 boinc boinc 218623308 Oct  9 18:17 EVNT.46676267._001154.pool.root.1
[2025-10-09 18:23:11] -rw-r--r--. 2 boinc boinc     15120 Oct  9 18:17 start_atlas.sh
[2025-10-09 18:23:11] drwxrwx--x. 2 boinc boinc      4096 Oct  9 18:17 shared
[2025-10-09 18:23:11] -rw-r--r--. 2 boinc boinc    569681 Oct  9 18:17 input.tar.gz
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc         0 Oct  9 18:17 boinc_lockfile
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc      2550 Oct  9 18:17 pandaJob.out
[2025-10-09 18:23:11] -rw-------. 1 boinc boinc    975454 Oct  9 18:17 agis_schedconf.cvmfs.json
[2025-10-09 18:23:11] -rw-------. 1 boinc boinc   1560580 Oct  9 18:18 agis_ddmendpoints.agis.ALL.json
[2025-10-09 18:23:11] drwx------. 5 boinc boinc      4096 Oct  9 18:18 pilot3
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc       524 Oct  9 18:19 boinc_task_state.xml
[2025-10-09 18:23:11] -rw-------. 1 boinc boinc       950 Oct  9 18:20 memory_monitor_summary.json
[2025-10-09 18:23:11] -rw-------. 1 boinc boinc     22076 Oct  9 18:20 log.46676269._027462.job.log.tgz.1
[2025-10-09 18:23:11] -rw-------. 1 boinc boinc        95 Oct  9 18:22 pilot_heartbeat.json
[2025-10-09 18:23:11] -rw-------. 1 boinc boinc      8387 Oct  9 18:22 heartbeat.json
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc      8192 Oct  9 18:23 boinc_mmap_file
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc        23 Oct  9 18:23 wrapper_checkpoint.txt
[2025-10-09 18:23:11] -rw-------. 1 boinc boinc      4822 Oct  9 18:23 pilotlog.txt
[2025-10-09 18:23:11] -rw-------. 1 boinc boinc     93105 Oct  9 18:23 log.46676269._027462.job.log.1
[2025-10-09 18:23:11] -rw-------. 1 boinc boinc       188 Oct  9 18:23 output.list
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc       620 Oct  9 18:23 runtime_log
[2025-10-09 18:23:11] -rw-------. 1 boinc boinc    133120 Oct  9 18:23 result.tar.gz
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc      8526 Oct  9 18:23 runtime_log.err
[2025-10-09 18:23:11] -rw-------. 1 boinc boinc       647 Oct  9 18:23 pLHODmFSER8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoWbNDmIqsWGo.diag
[2025-10-09 18:23:11] -rw-r--r--. 1 boinc boinc     21737 Oct  9 18:23 stderr.txt
[2025-10-09 18:23:11] No HITS result produced
[2025-10-09 18:23:11]  *** Contents of shared directory: ***
[2025-10-09 18:23:11] total 214208
[2025-10-09 18:23:11] -rw-r--r--. 2 boinc boinc 218623308 Oct  9 18:17 ATLAS.root_0
[2025-10-09 18:23:11] -rw-r--r--. 2 boinc boinc     15120 Oct  9 18:17 start_atlas.sh
[2025-10-09 18:23:11] -rw-r--r--. 2 boinc boinc    569681 Oct  9 18:17 input.tar.gz
[2025-10-09 18:23:11] -rw-------. 1 boinc boinc    133120 Oct  9 18:23 result.tar.gz
18:23:12 (608662): run_atlas exited; CPU time 29.697245
18:23:12 (608662): called boinc_finish(0)

</stderr_txt>
]]>

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