Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:44:13 (995453): wrapper (7.7.26015): starting
02:44:13 (995453): wrapper: running run_atlas (--nthreads 2)
[2025-10-10 02:44:13] Arguments: --nthreads 2
[2025-10-10 02:44:13] Threads: 2
[2025-10-10 02:44:13] Checking for CVMFS
[2025-10-10 02:44:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 02:44:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 02:44:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 02:44:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 02:44:13] 2.9.2.0 823835 747 54412 151528 1 56 2287640 36864000 0 130560 0 449696 99.986 21496 800 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-10 02:44:13] CVMFS is ok
[2025-10-10 02:44:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 02:44:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 02:44:13] Further information can be found at the LHC@home message board.
[2025-10-10 02:44:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 02:44:13] Checking for apptainer binary...
[2025-10-10 02:44:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 02:44:13] Running /usr/bin/apptainer --version
[2025-10-10 02:44:13] apptainer version 1.4.1-1.1
[2025-10-10 02:44:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 02:44:13] atlasA228a
[2025-10-10 02:44:13] apptainer works
[2025-10-10 02:44:13] Set ATHENA_PROC_NUMBER=2
[2025-10-10 02:44:13] Set ATHENA_CORE_NUMBER=2
[2025-10-10 02:44:13] Starting ATLAS job with PandaID=6837359241
[2025-10-10 02:44:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 04:44:43]  *** The last 200 lines of the pilot log: ***
[2025-10-10 04:44:43] 2025-10-10 02:44:04,808 | INFO     | process IDs to be killed: [1005566] (in reverse order)
[2025-10-10 04:44:43] 2025-10-10 02:44:04,830 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 04:44:43] 2025-10-10 02:44:04,830 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 04:44:43] 2025-10-10 02:44:04,830 | INFO     | did not find any defunct processes belonging to 1005566
[2025-10-10 04:44:43] 2025-10-10 02:44:04,831 | INFO     | did not find any defunct processes belonging to 1005566
[2025-10-10 04:44:43] 2025-10-10 02:44:04,831 | INFO     | ready for new job
[2025-10-10 04:44:43] 2025-10-10 02:44:04,831 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 04:44:43] 2025-10-10 02:44:04,832 | INFO     | ***************************************
[2025-10-10 04:44:43] 2025-10-10 02:44:04,832 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 04:44:43] 2025-10-10 02:44:04,832 | INFO     | ***************************************
[2025-10-10 04:44:43] 2025-10-10 02:44:04,832 | INFO     | 
[2025-10-10 04:44:43] 2025-10-10 02:44:04,832 | INFO     | architecture information:
[2025-10-10 04:44:43] 2025-10-10 02:44:04,832 | INFO     | executing command: cat /etc/os-release
[2025-10-10 04:44:43] 2025-10-10 02:44:04,840 | INFO     | cat /etc/os-release:
[2025-10-10 04:44:43] NAME="CentOS Linux"
[2025-10-10 04:44:43] VERSION="7 (Core)"
[2025-10-10 04:44:43] ID="centos"
[2025-10-10 04:44:43] ID_LIKE="rhel fedora"
[2025-10-10 04:44:43] VERSION_ID="7"
[2025-10-10 04:44:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 04:44:43] ANSI_COLOR="0;31"
[2025-10-10 04:44:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 04:44:43] HOME_URL="https://www.centos.org/"
[2025-10-10 04:44:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 04:44:43] 
[2025-10-10 04:44:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 04:44:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 04:44:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 04:44:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 04:44:43] 
[2025-10-10 04:44:43] 2025-10-10 02:44:04,841 | INFO     | ***************************************
[2025-10-10 04:44:43] 2025-10-10 02:44:05,344 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-10 04:44:43] 2025-10-10 02:44:05,355 | INFO     | sufficient remaining disk space (209305206784 B)
[2025-10-10 04:44:43] 2025-10-10 02:44:05,356 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 04:44:43] 2025-10-10 02:44:05,356 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 04:44:43] 2025-10-10 02:44:05,356 | INFO     | update_server=False
[2025-10-10 04:44:43] 2025-10-10 02:44:05,356 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 04:44:43] 2025-10-10 02:44:05,356 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 04:44:43] 2025-10-10 02:44:05,356 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 04:44:43] 2025-10-10 02:44:05,356 | INFO     | aborting loop
[2025-10-10 04:44:43] 2025-10-10 02:44:05,424 | INFO     | all job control threads have been joined
[2025-10-10 04:44:43] 2025-10-10 02:44:05,864 | INFO     | all payload control threads have been joined
[2025-10-10 04:44:43] 2025-10-10 02:44:06,290 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 04:44:43] 2025-10-10 02:44:06,362 | INFO     | [job] job monitor thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:06,362 | INFO     | [job] retrieve thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:06,363 | INFO     | [job] queue monitor thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:06,390 | INFO     | all data control threads have been joined
[2025-10-10 04:44:43] 2025-10-10 02:44:06,430 | INFO     | [job] control thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:06,455 | INFO     | [payload] failed_post thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:06,774 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:06,870 | INFO     | [payload] control thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:06,953 | INFO     | [data] copytool_in thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:06,999 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:07,288 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:07,307 | INFO     | [job] validate thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:07,396 | INFO     | [data] control thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:07,400 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:07,706 | INFO     | [payload] validate_post thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:08,296 | INFO     | [data] copytool_out thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:08,307 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 04:44:43] 2025-10-10 02:44:12,315 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 04:44:43] 2025-10-10 02:44:25,645 [wrapper] supervise_pilot (15 min periods counter: 9)
[2025-10-10 04:44:43] 2025-10-10 02:44:35,363 | INFO     | PID=999157 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 04:44:43] 2025-10-10 02:44:35,363 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 04:44:43] 2025-10-10 02:44:35,363 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 04:44:43] 2025-10-10 02:44:35,363 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 04:44:43] 2025-10-10 02:44:37,141 | INFO     | [monitor] cgroup control has ended
[2025-10-10 04:44:43] 2025-10-10 02:44:38,714 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139738071660352)>', '<ExcThread(monitor, started 139736895190784)>']
[2025-10-10 04:44:43] 2025-10-10 02:44:39,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 04:44:43] 2025-10-10 02:44:39,385 | INFO     | [monitor] control thread has ended
[2025-10-10 04:44:43] 2025-10-10 02:44:43,740 | INFO     | all workflow threads have been joined
[2025-10-10 04:44:43] 2025-10-10 02:44:43,741 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 04:44:43] 2025-10-10 02:44:43,741 | INFO     | traces error code: 0
[2025-10-10 04:44:43] 2025-10-10 02:44:43,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 04:44:43] 2025-10-10 02:44:43,783 [wrapper] ==== pilot stdout END ====
[2025-10-10 04:44:43] 2025-10-10 02:44:43,786 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 04:44:43] 2025-10-10 02:44:43,788 [wrapper] pilotpid: 999157
[2025-10-10 04:44:43] 2025-10-10 02:44:43,790 [wrapper] Pilot exit status: 0
[2025-10-10 04:44:43] 2025-10-10 02:44:43,796 [wrapper] pandaids: 6837359241
[2025-10-10 04:44:43] 2025-10-10 02:44:43,809 [wrapper] cleanup supervisor_pilot 1022039 999158
[2025-10-10 04:44:43] 2025-10-10 02:44:43,811 [wrapper] Test setup, not cleaning
[2025-10-10 04:44:43] 2025-10-10 02:44:43,813 [wrapper] apfmon messages muted
[2025-10-10 04:44:43] 2025-10-10 02:44:43,815 [wrapper] ==== wrapper stdout END ====
[2025-10-10 04:44:43] 2025-10-10 02:44:43,817 [wrapper] ==== wrapper stderr END ====
[2025-10-10 04:44:43]  *** Error codes and diagnostics ***
[2025-10-10 04:44:43]     "exeErrorCode": 0,
[2025-10-10 04:44:43]     "exeErrorDiag": "",
[2025-10-10 04:44:43]     "pilotErrorCode": 0,
[2025-10-10 04:44:43]     "pilotErrorDiag": "",
[2025-10-10 04:44:43]  *** Listing of results directory ***
[2025-10-10 04:44:43] total 405372
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc    557409 Oct  9 21:01 pilot3.tar.gz
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc      5112 Oct  9 21:18 queuedata.json
[2025-10-10 04:44:43] -rwx------ 1 boinc boinc     36292 Oct  9 21:18 runpilot2-wrapper.sh
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc       100 Oct 10 02:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 04:44:43] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 02:44 run_atlas
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc       105 Oct 10 02:44 job.xml
[2025-10-10 04:44:43] -rw-r--r-- 2 boinc boinc 220388258 Oct 10 02:44 EVNT.46676267._001029.pool.root.1
[2025-10-10 04:44:43] -rw-r--r-- 2 boinc boinc    569686 Oct 10 02:44 input.tar.gz
[2025-10-10 04:44:43] -rw-r--r-- 2 boinc boinc     15120 Oct 10 02:44 start_atlas.sh
[2025-10-10 04:44:43] drwxrwx--x 2 boinc boinc      4096 Oct 10 02:44 shared
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc         0 Oct 10 02:44 boinc_setup_complete
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc      6206 Oct 10 02:44 init_data.xml
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc         0 Oct 10 02:44 boinc_lockfile
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc      2549 Oct 10 02:44 pandaJob.out
[2025-10-10 04:44:43] -rw------- 1 boinc boinc    975454 Oct 10 02:44 agis_schedconf.cvmfs.json
[2025-10-10 04:44:43] -rw------- 1 boinc boinc   1560580 Oct 10 02:44 agis_ddmendpoints.agis.ALL.json
[2025-10-10 04:44:43] drwx------ 5 boinc boinc      4096 Oct 10 02:44 pilot3
[2025-10-10 04:44:43] -rw------- 1 boinc boinc 188199630 Oct 10 04:43 HITS.46676269._024900.pool.root.1
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc       529 Oct 10 04:43 boinc_task_state.xml
[2025-10-10 04:44:43] -rw------- 1 boinc boinc      1013 Oct 10 04:43 memory_monitor_summary.json
[2025-10-10 04:44:43] -rw------- 1 boinc boinc    278159 Oct 10 04:43 log.46676269._024900.job.log.tgz.1
[2025-10-10 04:44:43] -rw------- 1 boinc boinc        95 Oct 10 04:43 pilot_heartbeat.json
[2025-10-10 04:44:43] -rw------- 1 boinc boinc      7760 Oct 10 04:44 heartbeat.json
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc      8192 Oct 10 04:44 boinc_mmap_file
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc        27 Oct 10 04:44 wrapper_checkpoint.txt
[2025-10-10 04:44:43] -rw------- 1 boinc boinc      4751 Oct 10 04:44 pilotlog.txt
[2025-10-10 04:44:43] -rw------- 1 boinc boinc   1032502 Oct 10 04:44 log.46676269._024900.job.log.1
[2025-10-10 04:44:43] -rw------- 1 boinc boinc       357 Oct 10 04:44 output.list
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc       620 Oct 10 04:44 runtime_log
[2025-10-10 04:44:43] -rw------- 1 boinc boinc   1331200 Oct 10 04:44 result.tar.gz
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc      8797 Oct 10 04:44 runtime_log.err
[2025-10-10 04:44:43] -rw------- 1 boinc boinc       663 Oct 10 04:44 2QHKDmzKBR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmK9aNDmfvSg3n.diag
[2025-10-10 04:44:43] -rw-r--r-- 1 boinc boinc     10178 Oct 10 04:44 stderr.txt
[2025-10-10 04:44:43] HITS file was successfully produced:
[2025-10-10 04:44:43] -rw------- 1 boinc boinc 188199630 Oct 10 04:43 shared/HITS.pool.root.1
[2025-10-10 04:44:43]  *** Contents of shared directory: ***
[2025-10-10 04:44:43] total 400896
[2025-10-10 04:44:43] -rw-r--r-- 2 boinc boinc 220388258 Oct 10 02:44 ATLAS.root_0
[2025-10-10 04:44:43] -rw-r--r-- 2 boinc boinc    569686 Oct 10 02:44 input.tar.gz
[2025-10-10 04:44:43] -rw-r--r-- 2 boinc boinc     15120 Oct 10 02:44 start_atlas.sh
[2025-10-10 04:44:43] -rw------- 1 boinc boinc 188199630 Oct 10 04:43 HITS.pool.root.1
[2025-10-10 04:44:43] -rw------- 1 boinc boinc   1331200 Oct 10 04:44 result.tar.gz
04:44:45 (995453): run_atlas exited; CPU time 13937.222661
04:44:45 (995453): called boinc_finish(0)

</stderr_txt>
]]>

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