Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:32:31 (1413471): wrapper (7.7.26015): starting
16:32:31 (1413471): wrapper: running run_atlas (--nthreads 3)
[2025-10-10 16:32:31] Arguments: --nthreads 3
[2025-10-10 16:32:31] Threads: 3
[2025-10-10 16:32:31] Checking for CVMFS
[2025-10-10 16:32:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 16:32:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 16:32:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 16:32:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 16:32:31] 2.9.2.0 918150 1603 80460 151548 0 57 32993444 36864000 0 130560 0 1312413 99.991 49384 922 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-10 16:32:31] CVMFS is ok
[2025-10-10 16:32:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 16:32:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 16:32:31] Further information can be found at the LHC@home message board.
[2025-10-10 16:32:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 16:32:31] Checking for apptainer binary...
[2025-10-10 16:32:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 16:32:31] Running /usr/bin/apptainer --version
[2025-10-10 16:32:31] apptainer version 1.4.1-1.1
[2025-10-10 16:32:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 16:32:31] atlasA215
[2025-10-10 16:32:31] apptainer works
[2025-10-10 16:32:31] Set ATHENA_PROC_NUMBER=3
[2025-10-10 16:32:31] Set ATHENA_CORE_NUMBER=3
[2025-10-10 16:32:31] Starting ATLAS job with PandaID=6837359320
[2025-10-10 16:32:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 16:43:03]  *** The last 200 lines of the pilot log: ***
[2025-10-10 16:43:03] 2025-10-10 14:42:30,348 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 16:43:03] 2025-10-10 14:42:30,348 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | WARNING  | wrong length of table data, x=[1760107081.0], y=[598398.0] (must be same and length>=4)
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | could have reported an average CPU frequency of 3754 MHz (4 samples)
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | ..............................
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . Timing measurements:
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . get job = 0 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . initial setup = 1 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . payload setup = 2 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . stage-in = 0 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . payload execution = 451 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . stage-out = 0 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . log creation = 0 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | ..............................
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6837359320/pilotlog.txt
[2025-10-10 16:43:03] 2025-10-10 14:42:30,359 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-10 16:43:03] - Log from pilotlog.txt -
[2025-10-10 16:43:03] 2025-10-10 14:42:30,348 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6837359320/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 16:43:03] 2025-10-10 14:42:30,348 | INFO     | extracted standard info from prmon json
[2025-10-10 16:43:03] 2025-10-10 14:42:30,348 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 16:43:03] 2025-10-10 14:42:30,348 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | WARNING  | wrong length of table data, x=[1760107081.0], y=[598398.0] (must be same and length>=4)
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | could have reported an average CPU frequency of 3754 MHz (4 samples)
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | ..............................
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . Timing measurements:
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . get job = 0 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . initial setup = 1 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . payload setup = 2 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . stage-in = 0 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . payload execution = 451 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . stage-out = 0 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . log creation = 0 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | ..............................
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6837359320/pilotlog.txt
[2025-10-10 16:43:03] 2025-10-10 14:42:30,359 | WARNING  | 
[2025-10-10 16:43:03] [begin log extracts]
[2025-10-10 16:43:03] - Log from pilotlog.txt -
[2025-10-10 16:43:03] 2025-10-10 14:42:30,348 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6837359320/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 16:43:03] 2025-10-10 14:42:30,348 | INFO     | extracted standard info from prmon json
[2025-10-10 16:43:03] 2025-10-10 14:42:30,348 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 16:43:03] 2025-10-10 14:42:30,348 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | WARNING  | wrong length of table data, x=[1760107081.0], y=[598398.0] (must be same and length>=4)
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | could have reported an average CPU frequency of 3754 MHz (4 samples)
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | ..............................
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . Timing measurements:
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . get job = 0 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . initial setup = 1 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . payload setup = 2 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . stage-in = 0 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . payload execution = 451 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . stage-out = 0 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | . log creation = 0 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | ..............................
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 16:43:03] 2025-10-10 14:42:30,349 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6837359320/pilotlog.txt
[2025-10-10 16:43:03] [end log extracts]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,359 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-10 16:43:03] 2025-10-10 14:42:30,359 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-10 16:43:03] 2025-10-10 14:42:30,804 | INFO     | 
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | job summary report
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | --------------------------------------------------
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | PanDA job id: 6837359320
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | task id: 46676269
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-10 14:40:21,414 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | pilot state: failed 
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | transexitcode: 65
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | exeerrorcode: 65
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | exeerrordiag: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | exitcode: 65
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | exitmsg: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | cpuconsumptiontime: 62 s
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | nevents: 0
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | neventsw: 0
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | pid: 1423629
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | pgrp: 1423629
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | corecount: 3
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | event service: False
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | sizes: {0: 2348858, 2: 2349120, 10: 2349148, 458: 2380985, 462: 2380985, 580: 2381179}
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | --------------------------------------------------
[2025-10-10 16:43:03] 2025-10-10 14:42:30,805 | INFO     | 
[2025-10-10 16:43:03] 2025-10-10 14:42:30,806 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,821 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,822 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,822 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,822 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,822 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,822 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 16:43:03] 2025-10-10 14:42:30,822 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,822 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 16:43:03] 2025-10-10 14:42:30,822 | INFO     | job 6837359320 has completed (purged errors)
[2025-10-10 16:43:03] 2025-10-10 14:42:30,822 | INFO     | overall cleanup function is called
[2025-10-10 16:43:03] 2025-10-10 14:42:31,828 | INFO     | --- collectZombieJob: --- 10, [1423629]
[2025-10-10 16:43:03] 2025-10-10 14:42:31,828 | INFO     | zombie collector waiting for pid 1423629
[2025-10-10 16:43:03] 2025-10-10 14:42:31,828 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 16:43:03] 2025-10-10 14:42:31,829 | INFO     | collected zombie processes
[2025-10-10 16:43:03] 2025-10-10 14:42:31,829 | INFO     | will attempt to kill all subprocesses of pid=1423629
[2025-10-10 16:43:03] 2025-10-10 14:42:31,871 | INFO     | process IDs to be killed: [1423629] (in reverse order)
[2025-10-10 16:43:03] 2025-10-10 14:42:31,895 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 16:43:03] 2025-10-10 14:42:31,896 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 16:43:03] 2025-10-10 14:42:31,897 | INFO     | did not find any defunct processes belonging to 1423629
[2025-10-10 16:43:03] 2025-10-10 14:42:31,898 | INFO     | did not find any defunct processes belonging to 1423629
[2025-10-10 16:43:03] 2025-10-10 14:42:31,898 | INFO     | ready for new job
[2025-10-10 16:43:03] 2025-10-10 14:42:31,898 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 16:43:03] 2025-10-10 14:42:31,899 | INFO     | ***************************************
[2025-10-10 16:43:03] 2025-10-10 14:42:31,899 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 16:43:03] 2025-10-10 14:42:31,899 | INFO     | ***************************************
[2025-10-10 16:43:03] 2025-10-10 14:42:31,899 | INFO     | 
[2025-10-10 16:43:03] 2025-10-10 14:42:31,899 | INFO     | architecture information:
[2025-10-10 16:43:03] 2025-10-10 14:42:31,899 | INFO     | executing command: cat /etc/os-release
[2025-10-10 16:43:03] 2025-10-10 14:42:31,908 | INFO     | cat /etc/os-release:
[2025-10-10 16:43:03] NAME="CentOS Linux"
[2025-10-10 16:43:03] VERSION="7 (Core)"
[2025-10-10 16:43:03] ID="centos"
[2025-10-10 16:43:03] ID_LIKE="rhel fedora"
[2025-10-10 16:43:03] VERSION_ID="7"
[2025-10-10 16:43:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 16:43:03] ANSI_COLOR="0;31"
[2025-10-10 16:43:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 16:43:03] HOME_URL="https://www.centos.org/"
[2025-10-10 16:43:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 16:43:03] 
[2025-10-10 16:43:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 16:43:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 16:43:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 16:43:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 16:43:03] 
[2025-10-10 16:43:03] 2025-10-10 14:42:31,908 | INFO     | ***************************************
[2025-10-10 16:43:03] 2025-10-10 14:42:32,409 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-10 16:43:03] 2025-10-10 14:42:32,421 | INFO     | sufficient remaining disk space (370691538944 B)
[2025-10-10 16:43:03] 2025-10-10 14:42:32,422 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 16:43:03] 2025-10-10 14:42:32,422 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 16:43:03] 2025-10-10 14:42:32,422 | INFO     | update_server=False
[2025-10-10 16:43:03] 2025-10-10 14:42:32,422 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 16:43:03] 2025-10-10 14:42:32,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 16:43:03] 2025-10-10 14:42:32,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 16:43:03] 2025-10-10 14:42:32,422 | INFO     | aborting loop
[2025-10-10 16:43:03] 2025-10-10 14:42:32,711 | INFO     | all data control threads have been joined
[2025-10-10 16:43:03] 2025-10-10 14:42:33,327 | INFO     | all job control threads have been joined
[2025-10-10 16:43:03] 2025-10-10 14:42:33,426 | INFO     | [job] job monitor thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:33,427 | INFO     | [job] retrieve thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:33,473 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:33,717 | INFO     | [data] control thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:33,759 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:33,830 | INFO     | all payload control threads have been joined
[2025-10-10 16:43:03] 2025-10-10 14:42:34,141 | INFO     | [payload] validate_post thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:34,322 | INFO     | [data] copytool_in thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:34,333 | INFO     | [job] control thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:34,428 | INFO     | [data] copytool_out thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:34,579 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:34,667 | INFO     | [payload] failed_post thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:34,836 | INFO     | [payload] control thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:34,861 | INFO     | [job] validate thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:34,913 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:35,097 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 16:43:03] 2025-10-10 14:42:35,397 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 16:43:03] 2025-10-10 14:42:36,403 | INFO     | [job] queue monitor thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:37,154 | INFO     | [monitor] cgroup control has ended
[2025-10-10 16:43:03] 2025-10-10 14:42:39,102 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 16:43:03] 2025-10-10 14:42:40,001 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140299628136256)>', '<ExcThread(monitor, started 140298848032512)>']
[2025-10-10 16:43:03] 2025-10-10 14:42:45,002 | INFO     | all workflow threads have been joined
[2025-10-10 16:43:03] 2025-10-10 14:42:45,002 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 16:43:03] 2025-10-10 14:42:45,003 | INFO     | traces error code: 0
[2025-10-10 16:43:03] 2025-10-10 14:42:45,003 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 16:43:03] 2025-10-10 14:43:03,223 | INFO     | PID=1417196 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 16:43:03] 2025-10-10 14:43:03,223 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 16:43:03] 2025-10-10 14:43:03,223 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 16:43:03] 2025-10-10 14:43:03,223 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 16:43:03] 2025-10-10 14:43:03,223 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 16:43:03] 2025-10-10 14:43:03,223 | INFO     | [monitor] control thread has ended
[2025-10-10 16:43:03] 2025-10-10 14:43:03,273 [wrapper] ==== pilot stdout END ====
[2025-10-10 16:43:03] 2025-10-10 14:43:03,275 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 16:43:03] 2025-10-10 14:43:03,277 [wrapper] pilotpid: 1417196
[2025-10-10 16:43:03] 2025-10-10 14:43:03,280 [wrapper] Pilot exit status: 0
[2025-10-10 16:43:03] 2025-10-10 14:43:03,287 [wrapper] pandaids: 6837359320
[2025-10-10 16:43:03] 2025-10-10 14:43:03,303 [wrapper] cleanup supervisor_pilot 1417202 1417197
[2025-10-10 16:43:03] 2025-10-10 14:43:03,305 [wrapper] Test setup, not cleaning
[2025-10-10 16:43:03] 2025-10-10 14:43:03,307 [wrapper] apfmon messages muted
[2025-10-10 16:43:03] 2025-10-10 14:43:03,310 [wrapper] ==== wrapper stdout END ====
[2025-10-10 16:43:03] 2025-10-10 14:43:03,312 [wrapper] ==== wrapper stderr END ====
[2025-10-10 16:43:03]  *** Error codes and diagnostics ***
[2025-10-10 16:43:03]     "exeErrorCode": 65,
[2025-10-10 16:43:03]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-10-10 16:43:03]     "pilotErrorCode": 1305,
[2025-10-10 16:43:03]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-10-10 16:43:03]  *** Listing of results directory ***
[2025-10-10 16:43:03] total 218520
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc    557409 Oct  9 21:01 pilot3.tar.gz
[2025-10-10 16:43:03] -rwx------ 1 boinc boinc     36292 Oct  9 21:21 runpilot2-wrapper.sh
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc      5112 Oct  9 21:21 queuedata.json
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc       100 Oct 10 16:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 16:43:03] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 16:32 run_atlas
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc       105 Oct 10 16:32 job.xml
[2025-10-10 16:43:03] -rw-r--r-- 2 boinc boinc 219470977 Oct 10 16:32 EVNT.46676267._001032.pool.root.1
[2025-10-10 16:43:03] -rw-r--r-- 2 boinc boinc    569678 Oct 10 16:32 input.tar.gz
[2025-10-10 16:43:03] -rw-r--r-- 2 boinc boinc     15120 Oct 10 16:32 start_atlas.sh
[2025-10-10 16:43:03] drwxrwx--x 2 boinc boinc      4096 Oct 10 16:32 shared
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc         0 Oct 10 16:32 boinc_setup_complete
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc      6449 Oct 10 16:32 init_data.xml
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc         0 Oct 10 16:32 boinc_lockfile
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc      2549 Oct 10 16:32 pandaJob.out
[2025-10-10 16:43:03] -rw------- 1 boinc boinc    975525 Oct 10 16:32 agis_schedconf.cvmfs.json
[2025-10-10 16:43:03] -rw------- 1 boinc boinc   1560580 Oct 10 16:32 agis_ddmendpoints.agis.ALL.json
[2025-10-10 16:43:03] drwx------ 5 boinc boinc      4096 Oct 10 16:32 pilot3
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc       525 Oct 10 16:40 boinc_task_state.xml
[2025-10-10 16:43:03] -rw------- 1 boinc boinc      1000 Oct 10 16:40 memory_monitor_summary.json
[2025-10-10 16:43:03] -rw------- 1 boinc boinc     58542 Oct 10 16:40 log.46676269._024979.job.log.tgz.1
[2025-10-10 16:43:03] -rw------- 1 boinc boinc     10433 Oct 10 16:42 heartbeat.json
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc      8192 Oct 10 16:42 boinc_mmap_file
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc        23 Oct 10 16:42 wrapper_checkpoint.txt
[2025-10-10 16:43:03] -rw------- 1 boinc boinc       747 Oct 10 16:43 pilotlog.txt
[2025-10-10 16:43:03] -rw------- 1 boinc boinc        95 Oct 10 16:43 pilot_heartbeat.json
[2025-10-10 16:43:03] -rw------- 1 boinc boinc    138972 Oct 10 16:43 log.46676269._024979.job.log.1
[2025-10-10 16:43:03] -rw------- 1 boinc boinc       188 Oct 10 16:43 output.list
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc       620 Oct 10 16:43 runtime_log
[2025-10-10 16:43:03] -rw------- 1 boinc boinc    215040 Oct 10 16:43 result.tar.gz
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc      8639 Oct 10 16:43 runtime_log.err
[2025-10-10 16:43:03] -rw------- 1 boinc boinc       652 Oct 10 16:43 Sb8NDmnNBR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm6ZOMDmHdswNm.diag
[2025-10-10 16:43:03] -rw-r--r-- 1 boinc boinc     22239 Oct 10 16:43 stderr.txt
[2025-10-10 16:43:03] No HITS result produced
[2025-10-10 16:43:03]  *** Contents of shared directory: ***
[2025-10-10 16:43:03] total 215120
[2025-10-10 16:43:03] -rw-r--r-- 2 boinc boinc 219470977 Oct 10 16:32 ATLAS.root_0
[2025-10-10 16:43:03] -rw-r--r-- 2 boinc boinc    569678 Oct 10 16:32 input.tar.gz
[2025-10-10 16:43:03] -rw-r--r-- 2 boinc boinc     15120 Oct 10 16:32 start_atlas.sh
[2025-10-10 16:43:03] -rw------- 1 boinc boinc    215040 Oct 10 16:43 result.tar.gz
16:43:04 (1413471): run_atlas exited; CPU time 59.654129
16:43:04 (1413471): called boinc_finish(0)

</stderr_txt>
]]>

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