Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:40:36 (140172): wrapper (7.7.26015): starting
19:40:36 (140172): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 19:40:36] Arguments: --nthreads 12
[2025-10-10 19:40:36] Threads: 12
[2025-10-10 19:40:36] Checking for CVMFS
[2025-10-10 19:40:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 19:40:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 19:40:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 19:40:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 19:40:36] 2.13.2.0 9461 13264 90680 151556 1 188 6338375 46080001 922 130560 0 31074549 99.996 482275 24197 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-10 19:40:36] CVMFS is ok
[2025-10-10 19:40:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 19:40:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 19:40:36] Further information can be found at the LHC@home message board.
[2025-10-10 19:40:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 19:40:36] Checking for apptainer binary...
[2025-10-10 19:40:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 19:40:36] Running /usr/bin/apptainer --version
[2025-10-10 19:40:36] apptainer version 1.4.2-1.el9
[2025-10-10 19:40:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 19:40:37] minis01.farm.particle.cz
[2025-10-10 19:40:37] apptainer works
[2025-10-10 19:40:37] Set ATHENA_PROC_NUMBER=12
[2025-10-10 19:40:37] Set ATHENA_CORE_NUMBER=12
[2025-10-10 19:40:37] Starting ATLAS job with PandaID=6837353011
[2025-10-10 19:40:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 20:33:55]  *** The last 200 lines of the pilot log: ***
[2025-10-10 20:33:55]  replicas=None
[2025-10-10 20:33:55]  scope=mc23_13p6TeV
[2025-10-10 20:33:55]  status=None
[2025-10-10 20:33:55]  status_code=0
[2025-10-10 20:33:55]  storage_token=
[2025-10-10 20:33:55]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6837353011/log.46676269._022507.job.log.tgz.1
[2025-10-10 20:33:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/04/log.46676269._022507.job.log.tgz.1
[2025-10-10 20:33:55]  workdir=None
[2025-10-10 20:33:55] ]
[2025-10-10 20:33:55] 2025-10-10 18:33:01,137 | INFO     | transferring file log.46676269._022507.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6837353011/log.46676269._022507.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-10 20:33:55] 2025-10-10 18:33:01,138 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6837353011/log.46676269._022507.job.log.tgz.1 /var/lib/boinc/slots/3/log.46676269._022507.job
[2025-10-10 20:33:55] 2025-10-10 18:33:01,155 | INFO     | adding to output.list: log.46676269._022507.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/04/log.46676269._022507.job.log.tg
[2025-10-10 20:33:55] 2025-10-10 18:33:01,156 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 20:33:55] 2025-10-10 18:33:01,156 | INFO     | summary of transferred files:
[2025-10-10 20:33:55] 2025-10-10 18:33:01,156 | INFO     |  -- lfn=log.46676269._022507.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 20:33:55] 2025-10-10 18:33:01,156 | INFO     | stage-out finished correctly
[2025-10-10 20:33:55] 2025-10-10 18:33:01,528 | INFO     | time since job start (3136s) is within the limit (172800.0s)
[2025-10-10 20:33:55] 2025-10-10 18:33:02,347 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 20:33:55] 2025-10-10 18:33:03,534 | INFO     | time since job start (3138s) is within the limit (172800.0s)
[2025-10-10 20:33:55] 2025-10-10 18:33:04,336 | WARNING  | process 150737 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 20:33:55] 2025-10-10 18:33:04,336 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6837353011/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 20:33:55] 2025-10-10 18:33:04,471 | INFO     | number of running child processes to parent process 150737: 1
[2025-10-10 20:33:55] 2025-10-10 18:33:04,471 | INFO     | maximum number of monitored processes: 6
[2025-10-10 20:33:55] 2025-10-10 18:33:04,863 | INFO     | job 6837353011 has state=finished
[2025-10-10 20:33:55] 2025-10-10 18:33:04,863 | INFO     | preparing for final server update for job 6837353011 in state='finished'
[2025-10-10 20:33:55] 2025-10-10 18:33:04,864 | INFO     | this job has now completed (state=finished)
[2025-10-10 20:33:55] 2025-10-10 18:33:04,864 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 20:33:55] 2025-10-10 18:33:04,864 | INFO     | log transfer has been attempted: DONE
[2025-10-10 20:33:55] 2025-10-10 18:33:04,864 | INFO     | job 6837353011 has finished - writing final server update
[2025-10-10 20:33:55] 2025-10-10 18:33:04,865 | INFO     | total number of processed events: 400 (read)
[2025-10-10 20:33:55] 2025-10-10 18:33:04,865 | INFO     | executing command: lscpu
[2025-10-10 20:33:55] 2025-10-10 18:33:04,901 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 20:33:55] 2025-10-10 18:33:05,538 | INFO     | time since job start (3140s) is within the limit (172800.0s)
[2025-10-10 20:33:55] 2025-10-10 18:33:06,974 | INFO     | monitor loop #238: job 0:6837353011 is in state 'finished'
[2025-10-10 20:33:55] 2025-10-10 18:33:06,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 20:33:55] 2025-10-10 18:33:07,544 | INFO     | time since job start (3142s) is within the limit (172800.0s)
[2025-10-10 20:33:55] 2025-10-10 18:33:08,470 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 20:33:55] 2025-10-10 18:33:08,478 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2791.6071875
[2025-10-10 20:33:55] 2025-10-10 18:33:08,484 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6837353011/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 20:33:55] 2025-10-10 18:33:08,485 | INFO     | extracted standard info from prmon json
[2025-10-10 20:33:55] 2025-10-10 18:33:08,485 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 20:33:55] 2025-10-10 18:33:08,485 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 20:33:55] 2025-10-10 18:33:08,486 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 20:33:55] 2025-10-10 18:33:08,486 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 20:33:55] 2025-10-10 18:33:08,487 | INFO     | fitting pss+swap vs Time
[2025-10-10 20:33:55] 2025-10-10 18:33:08,488 | INFO     | sum of square deviations: 26400495.0
[2025-10-10 20:33:55] 2025-10-10 18:33:08,488 | INFO     | sum of deviations: -2574284423.9999995
[2025-10-10 20:33:55] 2025-10-10 18:33:08,488 | INFO     | mean x: 1760119686.5
[2025-10-10 20:33:55] 2025-10-10 18:33:08,488 | INFO     | mean y: 2786114.6818181816
[2025-10-10 20:33:55] 2025-10-10 18:33:08,488 | INFO     | -- intersect: 171630200423.87234
[2025-10-10 20:33:55] 2025-10-10 18:33:08,488 | INFO     | intersect: 171630200423.87234
[2025-10-10 20:33:55] 2025-10-10 18:33:08,489 | INFO     | chi2: 0.01857518720234103
[2025-10-10 20:33:55] 2025-10-10 18:33:08,489 | INFO     | -- intersect: 171630200423.87234
[2025-10-10 20:33:55] 2025-10-10 18:33:08,489 | INFO     | current memory leak: -97.51 B/s (using 44 data points, chi2=0.02)
[2025-10-10 20:33:55] 2025-10-10 18:33:08,489 | INFO     | could have reported an average CPU frequency of 2780 MHz (5 samples)
[2025-10-10 20:33:55] 2025-10-10 18:33:08,489 | INFO     | ..............................
[2025-10-10 20:33:55] 2025-10-10 18:33:08,489 | INFO     | . Timing measurements:
[2025-10-10 20:33:55] 2025-10-10 18:33:08,490 | INFO     | . get job = 0 s
[2025-10-10 20:33:55] 2025-10-10 18:33:08,490 | INFO     | . initial setup = 1 s
[2025-10-10 20:33:55] 2025-10-10 18:33:08,490 | INFO     | . payload setup = 4 s
[2025-10-10 20:33:55] 2025-10-10 18:33:08,490 | INFO     | . stage-in = 0 s
[2025-10-10 20:33:55] 2025-10-10 18:33:08,490 | INFO     | . payload execution = 3111 s
[2025-10-10 20:33:55] 2025-10-10 18:33:08,490 | INFO     | . stage-out = 0 s
[2025-10-10 20:33:55] 2025-10-10 18:33:08,490 | INFO     | . log creation = 0 s
[2025-10-10 20:33:55] 2025-10-10 18:33:08,490 | INFO     | ..............................
[2025-10-10 20:33:55] 2025-10-10 18:33:08,568 | INFO     | 
[2025-10-10 20:33:55] 2025-10-10 18:33:08,568 | INFO     | job summary report
[2025-10-10 20:33:55] 2025-10-10 18:33:08,568 | INFO     | --------------------------------------------------
[2025-10-10 20:33:55] 2025-10-10 18:33:08,568 | INFO     | PanDA job id: 6837353011
[2025-10-10 20:33:55] 2025-10-10 18:33:08,568 | INFO     | task id: 46676269
[2025-10-10 20:33:55] 2025-10-10 18:33:08,568 | INFO     | errors: (none)
[2025-10-10 20:33:55] 2025-10-10 18:33:08,568 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 20:33:55] 2025-10-10 18:33:08,568 | INFO     | pilot state: finished 
[2025-10-10 20:33:55] 2025-10-10 18:33:08,569 | INFO     | transexitcode: 0
[2025-10-10 20:33:55] 2025-10-10 18:33:08,569 | INFO     | exeerrorcode: 0
[2025-10-10 20:33:55] 2025-10-10 18:33:08,569 | INFO     | exeerrordiag: 
[2025-10-10 20:33:55] 2025-10-10 18:33:08,569 | INFO     | exitcode: 0
[2025-10-10 20:33:55] 2025-10-10 18:33:08,569 | INFO     | exitmsg: OK
[2025-10-10 20:33:55] 2025-10-10 18:33:08,569 | INFO     | cpuconsumptiontime: 33192 s
[2025-10-10 20:33:55] 2025-10-10 18:33:08,569 | INFO     | nevents: 400
[2025-10-10 20:33:55] 2025-10-10 18:33:08,569 | INFO     | neventsw: 0
[2025-10-10 20:33:55] 2025-10-10 18:33:08,569 | INFO     | pid: 150737
[2025-10-10 20:33:55] 2025-10-10 18:33:08,569 | INFO     | pgrp: 150737
[2025-10-10 20:33:55] 2025-10-10 18:33:08,570 | INFO     | corecount: 12
[2025-10-10 20:33:55] 2025-10-10 18:33:08,570 | INFO     | event service: False
[2025-10-10 20:33:55] 2025-10-10 18:33:08,570 | INFO     | sizes: {0: 2348855, 4: 2349117, 11: 2349145, 3119: 2374619, 3120: 2374618, 3121: 2383672, 3122: 2383856, 3128: 2384082}
[2025-10-10 20:33:55] 2025-10-10 18:33:08,570 | INFO     | --------------------------------------------------
[2025-10-10 20:33:55] 2025-10-10 18:33:08,570 | INFO     | 
[2025-10-10 20:33:55] 2025-10-10 18:33:08,570 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-10 20:33:55] 2025-10-10 18:33:08,589 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,590 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,590 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,590 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,590 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,590 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,590 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,590 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,591 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,591 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,591 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,591 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,591 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,591 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,591 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,591 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,592 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,592 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 20:33:55] 2025-10-10 18:33:08,592 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,592 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 20:33:55] 2025-10-10 18:33:08,592 | INFO     | job 6837353011 has completed (purged errors)
[2025-10-10 20:33:55] 2025-10-10 18:33:08,592 | INFO     | overall cleanup function is called
[2025-10-10 20:33:55] 2025-10-10 18:33:09,601 | INFO     | --- collectZombieJob: --- 10, [150737]
[2025-10-10 20:33:55] 2025-10-10 18:33:09,601 | INFO     | zombie collector waiting for pid 150737
[2025-10-10 20:33:55] 2025-10-10 18:33:09,602 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 20:33:55] 2025-10-10 18:33:09,602 | INFO     | collected zombie processes
[2025-10-10 20:33:55] 2025-10-10 18:33:09,602 | INFO     | will attempt to kill all subprocesses of pid=150737
[2025-10-10 20:33:55] 2025-10-10 18:33:09,744 | INFO     | process IDs to be killed: [150737] (in reverse order)
[2025-10-10 20:33:55] 2025-10-10 18:33:09,798 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 20:33:55] 2025-10-10 18:33:09,798 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 20:33:55] 2025-10-10 18:33:09,803 | INFO     | did not find any defunct processes belonging to 150737
[2025-10-10 20:33:55] 2025-10-10 18:33:09,807 | INFO     | did not find any defunct processes belonging to 150737
[2025-10-10 20:33:55] 2025-10-10 18:33:09,807 | INFO     | ready for new job
[2025-10-10 20:33:55] 2025-10-10 18:33:09,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 20:33:55] 2025-10-10 18:33:09,808 | INFO     | ***************************************
[2025-10-10 20:33:55] 2025-10-10 18:33:09,808 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 20:33:55] 2025-10-10 18:33:09,808 | INFO     | ***************************************
[2025-10-10 20:33:55] 2025-10-10 18:33:09,808 | INFO     | 
[2025-10-10 20:33:55] 2025-10-10 18:33:09,810 | INFO     | architecture information:
[2025-10-10 20:33:55] 2025-10-10 18:33:09,810 | INFO     | executing command: cat /etc/os-release
[2025-10-10 20:33:55] 2025-10-10 18:33:09,824 | INFO     | cat /etc/os-release:
[2025-10-10 20:33:55] NAME="CentOS Linux"
[2025-10-10 20:33:55] VERSION="7 (Core)"
[2025-10-10 20:33:55] ID="centos"
[2025-10-10 20:33:55] ID_LIKE="rhel fedora"
[2025-10-10 20:33:55] VERSION_ID="7"
[2025-10-10 20:33:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 20:33:55] ANSI_COLOR="0;31"
[2025-10-10 20:33:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 20:33:55] HOME_URL="https://www.centos.org/"
[2025-10-10 20:33:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 20:33:55] 
[2025-10-10 20:33:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 20:33:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 20:33:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 20:33:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 20:33:55] 
[2025-10-10 20:33:55] 2025-10-10 18:33:09,824 | INFO     | ***************************************
[2025-10-10 20:33:55] 2025-10-10 18:33:10,327 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-10 20:33:55] 2025-10-10 18:33:10,345 | INFO     | sufficient remaining disk space (65505591296 B)
[2025-10-10 20:33:55] 2025-10-10 18:33:10,345 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 20:33:55] 2025-10-10 18:33:10,346 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 20:33:55] 2025-10-10 18:33:10,346 | INFO     | update_server=False
[2025-10-10 20:33:55] 2025-10-10 18:33:10,346 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 20:33:55] 2025-10-10 18:33:10,346 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 20:33:55] 2025-10-10 18:33:10,482 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 20:33:55] 2025-10-10 18:33:10,483 | INFO     | aborting loop
[2025-10-10 20:33:55] 2025-10-10 18:33:10,785 | INFO     | all payload control threads have been joined
[2025-10-10 20:33:55] 2025-10-10 18:33:10,995 | INFO     | all job control threads have been joined
[2025-10-10 20:33:55] 2025-10-10 18:33:11,024 | INFO     | all data control threads have been joined
[2025-10-10 20:33:55] 2025-10-10 18:33:11,351 | INFO     | [job] retrieve thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:11,351 | INFO     | [job] queue monitor thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:11,486 | INFO     | [job] job monitor thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:11,741 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 20:33:55] 2025-10-10 18:33:11,791 | INFO     | [payload] control thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:11,870 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:11,913 | INFO     | [data] copytool_in thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:12,000 | INFO     | [job] control thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:12,029 | INFO     | [data] control thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:12,048 | INFO     | [payload] failed_post thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:12,206 | INFO     | [job] validate thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:12,432 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:12,542 | INFO     | [payload] validate_post thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:12,597 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:12,750 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:12,930 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 20:33:55] 2025-10-10 18:33:13,746 | INFO     | [data] copytool_out thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:16,936 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 20:33:55] 2025-10-10 18:33:40,822 | INFO     | PID=144033 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 20:33:55] 2025-10-10 18:33:40,822 | INFO     | .. there are 2 such processes running
[2025-10-10 20:33:55] 2025-10-10 18:33:40,823 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 20:33:55] 2025-10-10 18:33:40,823 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 20:33:55] 2025-10-10 18:33:40,823 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 20:33:55] 2025-10-10 18:33:49,855 | INFO     | [monitor] cgroup control has ended
[2025-10-10 20:33:55] 2025-10-10 18:33:50,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140356924614464)>', '<ExcThread(monitor, started 140356284827392)>']
[2025-10-10 20:33:55] 2025-10-10 18:33:50,869 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 20:33:55] 2025-10-10 18:33:50,869 | INFO     | [monitor] control thread has ended
[2025-10-10 20:33:55] 2025-10-10 18:33:55,276 | INFO     | all workflow threads have been joined
[2025-10-10 20:33:55] 2025-10-10 18:33:55,277 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 20:33:55] 2025-10-10 18:33:55,277 | INFO     | traces error code: 0
[2025-10-10 20:33:55] 2025-10-10 18:33:55,277 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 20:33:55] 2025-10-10 18:33:55,370 [wrapper] ==== pilot stdout END ====
[2025-10-10 20:33:55] 2025-10-10 18:33:55,373 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 20:33:55] 2025-10-10 18:33:55,376 [wrapper] pilotpid: 144033
[2025-10-10 20:33:55] 2025-10-10 18:33:55,378 [wrapper] Pilot exit status: 0
[2025-10-10 20:33:55] 2025-10-10 18:33:55,388 [wrapper] pandaids: 6837353011
[2025-10-10 20:33:55] 2025-10-10 18:33:55,426 [wrapper] cleanup supervisor_pilot  186687 144034
[2025-10-10 20:33:55] 2025-10-10 18:33:55,429 [wrapper] Test setup, not cleaning
[2025-10-10 20:33:55] 2025-10-10 18:33:55,431 [wrapper] apfmon messages muted
[2025-10-10 20:33:55] 2025-10-10 18:33:55,434 [wrapper] ==== wrapper stdout END ====
[2025-10-10 20:33:55] 2025-10-10 18:33:55,436 [wrapper] ==== wrapper stderr END ====
[2025-10-10 20:33:55]  *** Error codes and diagnostics ***
[2025-10-10 20:33:55]     "exeErrorCode": 0,
[2025-10-10 20:33:55]     "exeErrorDiag": "",
[2025-10-10 20:33:55]     "pilotErrorCode": 0,
[2025-10-10 20:33:55]     "pilotErrorDiag": "",
[2025-10-10 20:33:55]  *** Listing of results directory ***
[2025-10-10 20:33:55] total 408652
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc      5112 Oct  9 18:33 queuedata.json
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc    557409 Oct  9 18:33 pilot3.tar.gz
[2025-10-10 20:33:55] -rwx------. 1 boinc boinc     36292 Oct  9 18:34 runpilot2-wrapper.sh
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc       100 Oct 10 19:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 20:33:55] -rwxr-xr-x. 1 boinc boinc      7986 Oct 10 19:40 run_atlas
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc       105 Oct 10 19:40 job.xml
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc      6518 Oct 10 19:40 init_data.xml
[2025-10-10 20:33:55] -rw-r--r--. 2 boinc boinc 221436623 Oct 10 19:40 EVNT.46676267._000925.pool.root.1
[2025-10-10 20:33:55] -rw-r--r--. 2 boinc boinc     15120 Oct 10 19:40 start_atlas.sh
[2025-10-10 20:33:55] drwxrwx--x. 2 boinc boinc      4096 Oct 10 19:40 shared
[2025-10-10 20:33:55] -rw-r--r--. 2 boinc boinc    569680 Oct 10 19:40 input.tar.gz
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc         0 Oct 10 19:40 boinc_lockfile
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc      2549 Oct 10 19:40 pandaJob.out
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc    975525 Oct 10 19:40 agis_schedconf.cvmfs.json
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc   1560580 Oct 10 19:40 agis_ddmendpoints.agis.ALL.json
[2025-10-10 20:33:55] drwx------. 5 boinc boinc      4096 Oct 10 19:40 pilot3
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc 191438538 Oct 10 20:32 HITS.46676269._022507.pool.root.1
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc       529 Oct 10 20:32 boinc_task_state.xml
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc      1017 Oct 10 20:32 memory_monitor_summary.json
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc    354488 Oct 10 20:33 log.46676269._022507.job.log.tgz.1
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc      7779 Oct 10 20:33 heartbeat.json
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc        95 Oct 10 20:33 pilot_heartbeat.json
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc      8192 Oct 10 20:33 boinc_mmap_file
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc        27 Oct 10 20:33 wrapper_checkpoint.txt
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc      4822 Oct 10 20:33 pilotlog.txt
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc    483703 Oct 10 20:33 log.46676269._022507.job.log.1
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc       357 Oct 10 20:33 output.list
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc       620 Oct 10 20:33 runtime_log
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc    860160 Oct 10 20:33 result.tar.gz
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc      8750 Oct 10 20:33 runtime_log.err
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc       663 Oct 10 20:33 pX2LDm1l8Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNmaNDmsTC3rn.diag
[2025-10-10 20:33:55] -rw-r--r--. 1 boinc boinc     21865 Oct 10 20:33 stderr.txt
[2025-10-10 20:33:55] HITS file was successfully produced:
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc 191438538 Oct 10 20:32 shared/HITS.pool.root.1
[2025-10-10 20:33:55]  *** Contents of shared directory: ***
[2025-10-10 20:33:55] total 404624
[2025-10-10 20:33:55] -rw-r--r--. 2 boinc boinc 221436623 Oct 10 19:40 ATLAS.root_0
[2025-10-10 20:33:55] -rw-r--r--. 2 boinc boinc     15120 Oct 10 19:40 start_atlas.sh
[2025-10-10 20:33:55] -rw-r--r--. 2 boinc boinc    569680 Oct 10 19:40 input.tar.gz
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc 191438538 Oct 10 20:32 HITS.pool.root.1
[2025-10-10 20:33:55] -rw-------. 1 boinc boinc    860160 Oct 10 20:33 result.tar.gz
20:33:56 (140172): run_atlas exited; CPU time 33211.536897
20:33:56 (140172): called boinc_finish(0)

</stderr_txt>
]]>

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