Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:24:01 (2198458): wrapper (7.7.26015): starting
11:24:01 (2198458): wrapper: running run_atlas (--nthreads 4)
[2025-10-10 11:24:01] Arguments: --nthreads 4
[2025-10-10 11:24:01] Threads: 4
[2025-10-10 11:24:01] Checking for CVMFS
[2025-10-10 11:24:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 11:24:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 11:24:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 11:24:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 11:24:02] 2.9.2.0 1820726 1095 82560 151541 3 56 30537622 36864000 0 130560 0 982350 99.991 38590 918 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-10 11:24:02] CVMFS is ok
[2025-10-10 11:24:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 11:24:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 11:24:02] Further information can be found at the LHC@home message board.
[2025-10-10 11:24:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 11:24:02] Checking for apptainer binary...
[2025-10-10 11:24:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 11:24:02] Running /usr/bin/apptainer --version
[2025-10-10 11:24:02] apptainer version 1.4.1-1.1
[2025-10-10 11:24:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 11:24:02] thA338
[2025-10-10 11:24:02] apptainer works
[2025-10-10 11:24:02] Set ATHENA_PROC_NUMBER=4
[2025-10-10 11:24:02] Set ATHENA_CORE_NUMBER=4
[2025-10-10 11:24:02] Starting ATLAS job with PandaID=6832426080
[2025-10-10 11:24:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 12:29:29]  *** The last 200 lines of the pilot log: ***
[2025-10-10 12:29:29] 2025-10-10 10:28:58,091 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,091 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,091 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,091 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,091 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,092 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,092 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,092 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,092 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,092 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,092 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,092 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 12:29:29] 2025-10-10 10:28:58,092 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,092 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 12:29:29] 2025-10-10 10:28:58,092 | INFO     | job 6832426080 has completed (purged errors)
[2025-10-10 12:29:29] 2025-10-10 10:28:58,092 | INFO     | overall cleanup function is called
[2025-10-10 12:29:29] 2025-10-10 10:28:59,099 | INFO     | --- collectZombieJob: --- 10, [2208813]
[2025-10-10 12:29:29] 2025-10-10 10:28:59,099 | INFO     | zombie collector waiting for pid 2208813
[2025-10-10 12:29:29] 2025-10-10 10:28:59,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 12:29:29] 2025-10-10 10:28:59,099 | INFO     | collected zombie processes
[2025-10-10 12:29:29] 2025-10-10 10:28:59,099 | INFO     | will attempt to kill all subprocesses of pid=2208813
[2025-10-10 12:29:29] 2025-10-10 10:28:59,147 | INFO     | process IDs to be killed: [2208813] (in reverse order)
[2025-10-10 12:29:29] 2025-10-10 10:28:59,181 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 12:29:29] 2025-10-10 10:28:59,181 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 12:29:29] 2025-10-10 10:28:59,183 | INFO     | did not find any defunct processes belonging to 2208813
[2025-10-10 12:29:29] 2025-10-10 10:28:59,185 | INFO     | did not find any defunct processes belonging to 2208813
[2025-10-10 12:29:29] 2025-10-10 10:28:59,185 | INFO     | ready for new job
[2025-10-10 12:29:29] 2025-10-10 10:28:59,185 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 12:29:29] 2025-10-10 10:28:59,186 | INFO     | ***************************************
[2025-10-10 12:29:29] 2025-10-10 10:28:59,186 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-10 12:29:29] 2025-10-10 10:28:59,186 | INFO     | ***************************************
[2025-10-10 12:29:29] 2025-10-10 10:28:59,186 | INFO     | 
[2025-10-10 12:29:29] 2025-10-10 10:28:59,186 | INFO     | architecture information:
[2025-10-10 12:29:29] 2025-10-10 10:28:59,186 | INFO     | executing command: cat /etc/os-release
[2025-10-10 12:29:29] 2025-10-10 10:28:59,200 | INFO     | cat /etc/os-release:
[2025-10-10 12:29:29] NAME="CentOS Linux"
[2025-10-10 12:29:29] VERSION="7 (Core)"
[2025-10-10 12:29:29] ID="centos"
[2025-10-10 12:29:29] ID_LIKE="rhel fedora"
[2025-10-10 12:29:29] VERSION_ID="7"
[2025-10-10 12:29:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 12:29:29] ANSI_COLOR="0;31"
[2025-10-10 12:29:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 12:29:29] HOME_URL="https://www.centos.org/"
[2025-10-10 12:29:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 12:29:29] 
[2025-10-10 12:29:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 12:29:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 12:29:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 12:29:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 12:29:29] 
[2025-10-10 12:29:29] 2025-10-10 10:28:59,200 | INFO     | ***************************************
[2025-10-10 12:29:29] 2025-10-10 10:28:59,704 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-10 12:29:29] 2025-10-10 10:28:59,722 | INFO     | sufficient remaining disk space (228750000128 B)
[2025-10-10 12:29:29] 2025-10-10 10:28:59,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 12:29:29] 2025-10-10 10:28:59,722 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 12:29:29] 2025-10-10 10:28:59,722 | INFO     | update_server=False
[2025-10-10 12:29:29] 2025-10-10 10:28:59,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 12:29:29] 2025-10-10 10:28:59,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:29:29] 2025-10-10 10:28:59,722 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:29:29] 2025-10-10 10:28:59,722 | INFO     | aborting loop
[2025-10-10 12:29:29] 2025-10-10 10:28:59,723 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 12:29:29] 2025-10-10 10:29:00,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 12:29:29] 2025-10-10 10:29:00,560 | INFO     | all payload control threads have been joined
[2025-10-10 12:29:29] 2025-10-10 10:29:00,728 | INFO     | [job] retrieve thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:00,728 | INFO     | [job] queue monitor thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:00,729 | INFO     | [job] job monitor thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:00,755 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:00,791 | INFO     | all data control threads have been joined
[2025-10-10 12:29:29] 2025-10-10 10:29:00,830 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:01,059 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:01,196 | INFO     | all job control threads have been joined
[2025-10-10 12:29:29] 2025-10-10 10:29:01,311 | INFO     | [data] copytool_in thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:01,565 | INFO     | [payload] control thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:01,706 | INFO     | [payload] validate_post thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:01,729 | INFO     | [data] copytool_out thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:01,797 | INFO     | [data] control thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:02,105 | INFO     | [payload] failed_post thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:02,126 | INFO     | [job] validate thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:02,202 | INFO     | [job] control thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:04,231 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:10,554 | INFO     | job.realtimelogging is not enabled
[2025-10-10 12:29:29] 2025-10-10 10:29:11,560 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 12:29:29] 2025-10-10 10:29:14,554 | INFO     | [monitor] cgroup control has ended
[2025-10-10 12:29:29] 2025-10-10 10:29:16,208 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139958531262272)>', '<ExcThread(monitor, started 139958169868032)>']
[2025-10-10 12:29:29] 2025-10-10 10:29:21,233 | INFO     | all workflow threads have been joined
[2025-10-10 12:29:29] 2025-10-10 10:29:21,234 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 12:29:29] 2025-10-10 10:29:21,234 | INFO     | traces error code: 0
[2025-10-10 12:29:29] 2025-10-10 10:29:21,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 12:29:29] 2025-10-10 10:29:29,584 | INFO     | PID=2202233 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 12:29:29] 2025-10-10 10:29:29,584 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 12:29:29] 2025-10-10 10:29:29,584 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 12:29:29] 2025-10-10 10:29:29,584 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 12:29:29] 2025-10-10 10:29:29,584 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 12:29:29] 2025-10-10 10:29:29,584 | INFO     | [monitor] control thread has ended
[2025-10-10 12:29:29] 2025-10-10 10:29:29,661 [wrapper] ==== pilot stdout END ====
[2025-10-10 12:29:29] 2025-10-10 10:29:29,666 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 12:29:29] 2025-10-10 10:29:29,669 [wrapper] pilotpid: 2202233
[2025-10-10 12:29:29] 2025-10-10 10:29:29,673 [wrapper] Pilot exit status: 0
[2025-10-10 12:29:29] 2025-10-10 10:29:29,685 [wrapper] pandaids: 6832426080
[2025-10-10 12:29:29] 2025-10-10 10:29:29,708 [wrapper] cleanup supervisor_pilot 2218827 2202234
[2025-10-10 12:29:29] 2025-10-10 10:29:29,712 [wrapper] Test setup, not cleaning
[2025-10-10 12:29:29] 2025-10-10 10:29:29,716 [wrapper] apfmon messages muted
[2025-10-10 12:29:29] 2025-10-10 10:29:29,720 [wrapper] ==== wrapper stdout END ====
[2025-10-10 12:29:29] 2025-10-10 10:29:29,723 [wrapper] ==== wrapper stderr END ====
[2025-10-10 12:29:29]  *** Error codes and diagnostics ***
[2025-10-10 12:29:29]     "exeErrorCode": 0,
[2025-10-10 12:29:29]     "exeErrorDiag": "",
[2025-10-10 12:29:29]     "pilotErrorCode": 0,
[2025-10-10 12:29:29]     "pilotErrorDiag": "",
[2025-10-10 12:29:29]  *** Listing of results directory ***
[2025-10-10 12:29:29] total 384328
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc      5112 Oct  6 08:44 queuedata.json
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc    552446 Oct  6 08:44 pilot3.tar.gz
[2025-10-10 12:29:29] -rwx------ 1 boinc boinc     36292 Oct  6 08:45 runpilot2-wrapper.sh
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc       100 Oct 10 11:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 12:29:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 11:24 run_atlas
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc       105 Oct 10 11:24 job.xml
[2025-10-10 12:29:29] -rw-r--r-- 2 boinc boinc 212793085 Oct 10 11:24 EVNT.46376901._003973.pool.root.1
[2025-10-10 12:29:29] -rw-r--r-- 2 boinc boinc    565600 Oct 10 11:24 input.tar.gz
[2025-10-10 12:29:29] -rw-r--r-- 2 boinc boinc     15120 Oct 10 11:24 start_atlas.sh
[2025-10-10 12:29:29] drwxrwx--x 2 boinc boinc      4096 Oct 10 11:24 shared
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc         0 Oct 10 11:24 boinc_setup_complete
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc      6377 Oct 10 11:24 init_data.xml
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc         0 Oct 10 11:24 boinc_lockfile
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc      2519 Oct 10 11:24 pandaJob.out
[2025-10-10 12:29:29] -rw------- 1 boinc boinc    975511 Oct 10 11:24 agis_schedconf.cvmfs.json
[2025-10-10 12:29:29] -rw------- 1 boinc boinc   1560580 Oct 10 11:24 agis_ddmendpoints.agis.ALL.json
[2025-10-10 12:29:29] drwx------ 4 boinc boinc      4096 Oct 10 11:24 pilot3
[2025-10-10 12:29:29] -rw------- 1 boinc boinc        95 Oct 10 12:28 pilot_heartbeat.json
[2025-10-10 12:29:29] -rw------- 1 boinc boinc 175208636 Oct 10 12:28 HITS.46376905._107211.pool.root.1
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc       529 Oct 10 12:28 boinc_task_state.xml
[2025-10-10 12:29:29] -rw------- 1 boinc boinc      1023 Oct 10 12:28 memory_monitor_summary.json
[2025-10-10 12:29:29] -rw------- 1 boinc boinc    255382 Oct 10 12:28 log.46376905._107211.job.log.tgz.1
[2025-10-10 12:29:29] -rw------- 1 boinc boinc      7766 Oct 10 12:28 heartbeat.json
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc      8192 Oct 10 12:29 boinc_mmap_file
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc        27 Oct 10 12:29 wrapper_checkpoint.txt
[2025-10-10 12:29:29] -rw------- 1 boinc boinc       747 Oct 10 12:29 pilotlog.txt
[2025-10-10 12:29:29] -rw------- 1 boinc boinc    580287 Oct 10 12:29 log.46376905._107211.job.log.1
[2025-10-10 12:29:29] -rw------- 1 boinc boinc       357 Oct 10 12:29 output.list
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc       620 Oct 10 12:29 runtime_log
[2025-10-10 12:29:29] -rw------- 1 boinc boinc    849920 Oct 10 12:29 result.tar.gz
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc      8777 Oct 10 12:29 runtime_log.err
[2025-10-10 12:29:29] -rw------- 1 boinc boinc       658 Oct 10 12:29 kwRLDm68tP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMsSNDm3wsQRn.diag
[2025-10-10 12:29:29] -rw-r--r-- 1 boinc boinc     12338 Oct 10 12:29 stderr.txt
[2025-10-10 12:29:29] HITS file was successfully produced:
[2025-10-10 12:29:29] -rw------- 1 boinc boinc 175208636 Oct 10 12:28 shared/HITS.pool.root.1
[2025-10-10 12:29:29]  *** Contents of shared directory: ***
[2025-10-10 12:29:29] total 380324
[2025-10-10 12:29:29] -rw-r--r-- 2 boinc boinc 212793085 Oct 10 11:24 ATLAS.root_0
[2025-10-10 12:29:29] -rw-r--r-- 2 boinc boinc    565600 Oct 10 11:24 input.tar.gz
[2025-10-10 12:29:29] -rw-r--r-- 2 boinc boinc     15120 Oct 10 11:24 start_atlas.sh
[2025-10-10 12:29:29] -rw------- 1 boinc boinc 175208636 Oct 10 12:28 HITS.pool.root.1
[2025-10-10 12:29:29] -rw------- 1 boinc boinc    849920 Oct 10 12:29 result.tar.gz
12:29:31 (2198458): run_atlas exited; CPU time 14451.369126
12:29:31 (2198458): called boinc_finish(0)

</stderr_txt>
]]>

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