Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:27:32 (172597): wrapper (7.7.26015): starting
09:27:32 (172597): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 09:27:32] Arguments: --nthreads 4
[2025-10-12 09:27:32] Threads: 4
[2025-10-12 09:27:32] Checking for CVMFS
[2025-10-12 09:27:32] No cvmfs_config command found, will try listing directly
[2025-10-12 09:27:32] CVMFS is ok
[2025-10-12 09:27:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 09:27:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 09:27:32] Further information can be found at the LHC@home message board.
[2025-10-12 09:27:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 09:27:32] Checking for apptainer binary...
[2025-10-12 09:27:32] which: no apptainer in ((null))
[2025-10-12 09:27:32] apptainer is not installed, using version from CVMFS
[2025-10-12 09:27:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 09:27:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot96/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-10-12 09:27:32] apptainer works
[2025-10-12 09:27:32] Set ATHENA_PROC_NUMBER=4
[2025-10-12 09:27:32] Set ATHENA_CORE_NUMBER=4
[2025-10-12 09:27:32] Starting ATLAS job with PandaID=6837359084
[2025-10-12 09:27:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot96/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:05:07]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:05:07] 2025-10-12 10:03:31,775 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 12:05:07] 2025-10-12 10:03:31,775 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 12:05:07] 2025-10-12 10:03:31,779 | INFO     | fitting pss+swap vs Time
[2025-10-12 12:05:07] 2025-10-12 10:03:31,779 | INFO     | sum of square deviations: 1110539892.0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,780 | INFO     | sum of deviations: -2979639123.000003
[2025-10-12 12:05:07] 2025-10-12 10:03:31,780 | INFO     | mean x: 1760258737.0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,780 | INFO     | mean y: 2321272.6732026143
[2025-10-12 12:05:07] 2025-10-12 10:03:31,780 | INFO     | -- intersect: 4725191506.467355
[2025-10-12 12:05:07] 2025-10-12 10:03:31,781 | INFO     | intersect: 4725191506.467355
[2025-10-12 12:05:07] 2025-10-12 10:03:31,781 | INFO     | chi2: 2.1539894866900253
[2025-10-12 12:05:07] 2025-10-12 10:03:31,781 | INFO     | sum of square deviations: 1005179777.0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,782 | INFO     | sum of deviations: 6609142294.999994
[2025-10-12 12:05:07] 2025-10-12 10:03:31,782 | INFO     | mean x: 1760258584.5
[2025-10-12 12:05:07] 2025-10-12 10:03:31,782 | INFO     | mean y: 2334783.7702702703
[2025-10-12 12:05:07] 2025-10-12 10:03:31,782 | INFO     | -- intersect: -11571514717.736137
[2025-10-12 12:05:07] 2025-10-12 10:03:31,782 | INFO     | intersect: -11571514717.736137
[2025-10-12 12:05:07] 2025-10-12 10:03:31,783 | INFO     | chi2: 1.3555308754338173
[2025-10-12 12:05:07] 2025-10-12 10:03:31,783 | INFO     | current chi2=1.3555308754338173 (change=37.0688258317907 %)
[2025-10-12 12:05:07] 2025-10-12 10:03:31,783 | INFO     | sum of square deviations: 906703512.0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,784 | INFO     | sum of deviations: 6420267202.000003
[2025-10-12 12:05:07] 2025-10-12 10:03:31,784 | INFO     | mean x: 1760258432.0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,784 | INFO     | mean y: 2334491.062937063
[2025-10-12 12:05:07] 2025-10-12 10:03:31,784 | INFO     | -- intersect: -12461860616.20555
[2025-10-12 12:05:07] 2025-10-12 10:03:31,784 | INFO     | intersect: -12461860616.20555
[2025-10-12 12:05:07] 2025-10-12 10:03:31,784 | INFO     | chi2: 1.3567388030343965
[2025-10-12 12:05:07] 2025-10-12 10:03:31,785 | INFO     | current chi2=1.3567388030343965 (change=-0.08911103557066644 %)
[2025-10-12 12:05:07] 2025-10-12 10:03:31,785 | INFO     | right removable region: 142
[2025-10-12 12:05:07] 2025-10-12 10:03:31,785 | INFO     | sum of square deviations: 1005179777.0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,786 | INFO     | sum of deviations: -20907013974.0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,786 | INFO     | mean x: 1760258889.5
[2025-10-12 12:05:07] 2025-10-12 10:03:31,786 | INFO     | mean y: 2346716.3243243243
[2025-10-12 12:05:07] 2025-10-12 10:03:31,786 | INFO     | -- intersect: 36614461327.772804
[2025-10-12 12:05:07] 2025-10-12 10:03:31,786 | INFO     | intersect: 36614461327.772804
[2025-10-12 12:05:07] 2025-10-12 10:03:31,787 | INFO     | chi2: 0.8589890065965176
[2025-10-12 12:05:07] 2025-10-12 10:03:31,787 | INFO     | current chi2=0.8589890065965176 (change=60.121021392889816 %)
[2025-10-12 12:05:07] 2025-10-12 10:03:31,787 | INFO     | sum of square deviations: 906703512.0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,788 | INFO     | sum of deviations: -19244698216.000004
[2025-10-12 12:05:07] 2025-10-12 10:03:31,788 | INFO     | mean x: 1760259042.0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,788 | INFO     | mean y: 2344132.6153846155
[2025-10-12 12:05:07] 2025-10-12 10:03:31,788 | INFO     | -- intersect: 37363679560.28193
[2025-10-12 12:05:07] 2025-10-12 10:03:31,788 | INFO     | intersect: 37363679560.28193
[2025-10-12 12:05:07] 2025-10-12 10:03:31,788 | INFO     | chi2: 0.8594105109647578
[2025-10-12 12:05:07] 2025-10-12 10:03:31,789 | INFO     | current chi2=0.8594105109647578 (change=-0.04906982103419126 %)
[2025-10-12 12:05:07] 2025-10-12 10:03:31,789 | INFO     | left removable region: 20
[2025-10-12 12:05:07] 2025-10-12 10:03:31,789 | INFO     | sum of square deviations: 563026370.5
[2025-10-12 12:05:07] 2025-10-12 10:03:31,790 | INFO     | sum of deviations: -5663171680.000001
[2025-10-12 12:05:07] 2025-10-12 10:03:31,790 | INFO     | mean x: 1760259011.5
[2025-10-12 12:05:07] 2025-10-12 10:03:31,790 | INFO     | mean y: 2352642.950819672
[2025-10-12 12:05:07] 2025-10-12 10:03:31,790 | INFO     | -- intersect: 17707827032.256706
[2025-10-12 12:05:07] 2025-10-12 10:03:31,790 | INFO     | intersect: 17707827032.256706
[2025-10-12 12:05:07] 2025-10-12 10:03:31,790 | INFO     | chi2: 0.02527377334967743
[2025-10-12 12:05:07] 2025-10-12 10:03:31,790 | INFO     | -- intersect: 17707827032.256706
[2025-10-12 12:05:07] 2025-10-12 10:03:31,790 | INFO     | current memory leak: -10.06 B/s (using 122 data points, chi2=0.03)
[2025-10-12 12:05:07] 2025-10-12 10:03:31,791 | INFO     | could have reported an average CPU frequency of 2714 MHz (9 samples)
[2025-10-12 12:05:07] 2025-10-12 10:03:31,791 | INFO     | ..............................
[2025-10-12 12:05:07] 2025-10-12 10:03:31,791 | INFO     | . Timing measurements:
[2025-10-12 12:05:07] 2025-10-12 10:03:31,791 | INFO     | . get job = 0 s
[2025-10-12 12:05:07] 2025-10-12 10:03:31,791 | INFO     | . initial setup = 1 s
[2025-10-12 12:05:07] 2025-10-12 10:03:31,791 | INFO     | . payload setup = 8 s
[2025-10-12 12:05:07] 2025-10-12 10:03:31,791 | INFO     | . stage-in = 0 s
[2025-10-12 12:05:07] 2025-10-12 10:03:31,792 | INFO     | . payload execution = 9304 s
[2025-10-12 12:05:07] 2025-10-12 10:03:31,792 | INFO     | . stage-out = 0 s
[2025-10-12 12:05:07] 2025-10-12 10:03:31,792 | INFO     | . log creation = 0 s
[2025-10-12 12:05:07] 2025-10-12 10:03:31,792 | INFO     | ..............................
[2025-10-12 12:05:07] 2025-10-12 10:03:31,894 | INFO     | 
[2025-10-12 12:05:07] 2025-10-12 10:03:31,894 | INFO     | job summary report
[2025-10-12 12:05:07] 2025-10-12 10:03:31,895 | INFO     | --------------------------------------------------
[2025-10-12 12:05:07] 2025-10-12 10:03:31,895 | INFO     | PanDA job id: 6837359084
[2025-10-12 12:05:07] 2025-10-12 10:03:31,895 | INFO     | task id: 46676269
[2025-10-12 12:05:07] 2025-10-12 10:03:31,895 | INFO     | errors: (none)
[2025-10-12 12:05:07] 2025-10-12 10:03:31,895 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 12:05:07] 2025-10-12 10:03:31,895 | INFO     | pilot state: finished 
[2025-10-12 12:05:07] 2025-10-12 10:03:31,895 | INFO     | transexitcode: 0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,895 | INFO     | exeerrorcode: 0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,895 | INFO     | exeerrordiag: 
[2025-10-12 12:05:07] 2025-10-12 10:03:31,895 | INFO     | exitcode: 0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,895 | INFO     | exitmsg: OK
[2025-10-12 12:05:07] 2025-10-12 10:03:31,895 | INFO     | cpuconsumptiontime: 35692 s
[2025-10-12 12:05:07] 2025-10-12 10:03:31,896 | INFO     | nevents: 400
[2025-10-12 12:05:07] 2025-10-12 10:03:31,896 | INFO     | neventsw: 0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,896 | INFO     | pid: 204727
[2025-10-12 12:05:07] 2025-10-12 10:03:31,896 | INFO     | pgrp: 204727
[2025-10-12 12:05:07] 2025-10-12 10:03:31,896 | INFO     | corecount: 4
[2025-10-12 12:05:07] 2025-10-12 10:03:31,896 | INFO     | event service: False
[2025-10-12 12:05:07] 2025-10-12 10:03:31,896 | INFO     | sizes: {0: 2348695, 1: 2348894, 7: 2349156, 11: 2349184, 9317: 2377877, 9318: 2387081, 9327: 2387283}
[2025-10-12 12:05:07] 2025-10-12 10:03:31,896 | INFO     | --------------------------------------------------
[2025-10-12 12:05:07] 2025-10-12 10:03:31,896 | INFO     | 
[2025-10-12 12:05:07] 2025-10-12 10:03:31,896 | INFO     | executing command: ls -lF /scratch/boinc/var/slot96/slots/0
[2025-10-12 12:05:07] 2025-10-12 10:03:31,925 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,925 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,925 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,925 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,925 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,925 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,926 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,926 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,926 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,926 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,926 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,926 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,926 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,926 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,926 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,926 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,926 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,927 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 12:05:07] 2025-10-12 10:03:31,927 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,927 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 12:05:07] 2025-10-12 10:03:31,927 | INFO     | job 6837359084 has completed (purged errors)
[2025-10-12 12:05:07] 2025-10-12 10:03:31,927 | INFO     | overall cleanup function is called
[2025-10-12 12:05:07] 2025-10-12 10:03:32,936 | INFO     | --- collectZombieJob: --- 10, [204727]
[2025-10-12 12:05:07] 2025-10-12 10:03:32,936 | INFO     | zombie collector waiting for pid 204727
[2025-10-12 12:05:07] 2025-10-12 10:03:32,937 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 12:05:07] 2025-10-12 10:03:32,937 | INFO     | collected zombie processes
[2025-10-12 12:05:07] 2025-10-12 10:03:32,937 | INFO     | will attempt to kill all subprocesses of pid=204727
[2025-10-12 12:05:07] 2025-10-12 10:03:33,714 | INFO     | process IDs to be killed: [204727] (in reverse order)
[2025-10-12 12:05:07] 2025-10-12 10:03:33,961 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:05:07] 2025-10-12 10:03:33,961 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:05:07] 2025-10-12 10:03:33,991 | INFO     | did not find any defunct processes belonging to 204727
[2025-10-12 12:05:07] 2025-10-12 10:03:34,023 | INFO     | did not find any defunct processes belonging to 204727
[2025-10-12 12:05:07] 2025-10-12 10:03:34,024 | INFO     | ready for new job
[2025-10-12 12:05:07] 2025-10-12 10:03:34,024 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:05:07] 2025-10-12 10:03:34,027 | INFO     | ***************************************
[2025-10-12 12:05:07] 2025-10-12 10:03:34,027 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 12:05:07] 2025-10-12 10:03:34,027 | INFO     | ***************************************
[2025-10-12 12:05:07] 2025-10-12 10:03:34,027 | INFO     | 
[2025-10-12 12:05:07] 2025-10-12 10:03:34,036 | INFO     | architecture information:
[2025-10-12 12:05:07] 2025-10-12 10:03:34,036 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:05:07] 2025-10-12 10:03:34,060 | INFO     | cat /etc/os-release:
[2025-10-12 12:05:07] NAME="CentOS Linux"
[2025-10-12 12:05:07] VERSION="7 (Core)"
[2025-10-12 12:05:07] ID="centos"
[2025-10-12 12:05:07] ID_LIKE="rhel fedora"
[2025-10-12 12:05:07] VERSION_ID="7"
[2025-10-12 12:05:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:05:07] ANSI_COLOR="0;31"
[2025-10-12 12:05:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:05:07] HOME_URL="https://www.centos.org/"
[2025-10-12 12:05:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:05:07] 
[2025-10-12 12:05:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:05:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:05:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:05:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:05:07] 
[2025-10-12 12:05:07] 2025-10-12 10:03:34,060 | INFO     | ***************************************
[2025-10-12 12:05:07] 2025-10-12 10:03:34,564 | INFO     | executing command: df -mP /scratch/boinc/var/slot96/slots/0
[2025-10-12 12:05:07] 2025-10-12 10:03:34,587 | INFO     | sufficient remaining disk space (3321167347712 B)
[2025-10-12 12:05:07] 2025-10-12 10:03:34,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:05:07] 2025-10-12 10:03:34,588 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:05:07] 2025-10-12 10:03:34,588 | INFO     | update_server=False
[2025-10-12 12:05:07] 2025-10-12 10:03:34,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:05:07] 2025-10-12 10:03:34,733 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:05:07] 2025-10-12 10:03:34,733 | INFO     | aborting loop
[2025-10-12 12:05:07] 2025-10-12 10:03:35,191 | INFO     | all job control threads have been joined
[2025-10-12 12:05:07] 2025-10-12 10:03:35,487 | INFO     | all data control threads have been joined
[2025-10-12 12:05:07] 2025-10-12 10:03:35,594 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:35,643 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:35,696 | INFO     | all payload control threads have been joined
[2025-10-12 12:05:07] 2025-10-12 10:03:35,738 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:35,791 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:05:07] 2025-10-12 10:03:35,860 | INFO     | [job] validate thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:36,200 | INFO     | [job] control thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:36,234 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:36,248 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:36,253 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:36,263 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:36,492 | INFO     | [data] control thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:36,702 | INFO     | [payload] control thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:36,905 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:05:07] 2025-10-12 10:03:37,064 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:37,796 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:37,910 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:38,058 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:05:07] 2025-10-12 10:03:42,065 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:03:44,912 | INFO     | job.realtimelogging is not enabled
[2025-10-12 12:05:07] 2025-10-12 10:03:45,917 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:05:07] 2025-10-12 10:04:01,172 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:05:07] 2025-10-12 10:04:01,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23126395598656)>', '<ExcThread(monitor, started 23126152795904)>']
[2025-10-12 12:05:07] 2025-10-12 10:04:04,815 | INFO     | PID=181934 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 12:05:07] 2025-10-12 10:04:04,815 | INFO     | .. there are 10 such processes running
[2025-10-12 12:05:07] 2025-10-12 10:04:04,815 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:05:07] 2025-10-12 10:04:04,815 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:05:07] 2025-10-12 10:04:04,816 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:05:07] 2025-10-12 10:04:04,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:05:07] 2025-10-12 10:04:04,816 | INFO     | [monitor] control thread has ended
[2025-10-12 12:05:07] 2025-10-12 10:04:06,797 | INFO     | all workflow threads have been joined
[2025-10-12 12:05:07] 2025-10-12 10:04:06,797 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:05:07] 2025-10-12 10:04:06,797 | INFO     | traces error code: 0
[2025-10-12 12:05:07] 2025-10-12 10:04:06,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:05:07] 2025-10-12 10:04:06,972 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:05:07] 2025-10-12 10:04:06,975 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:05:07] 2025-10-12 10:04:06,979 [wrapper] pilotpid: 181934
[2025-10-12 12:05:07] 2025-10-12 10:04:06,983 [wrapper] Pilot exit status: 0
[2025-10-12 12:05:07] 2025-10-12 10:04:06,997 [wrapper] pandaids: 6837359084
[2025-10-12 12:05:07] 2025-10-12 10:04:07,163 [wrapper] cleanup supervisor_pilot  657265 181935
[2025-10-12 12:05:07] 2025-10-12 10:04:07,169 [wrapper] Test setup, not cleaning
[2025-10-12 12:05:07] 2025-10-12 10:04:07,173 [wrapper] apfmon messages muted
[2025-10-12 12:05:07] 2025-10-12 10:04:07,177 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:05:07] 2025-10-12 10:04:07,181 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:05:07]  *** Error codes and diagnostics ***
[2025-10-12 12:05:07]     "exeErrorCode": 0,
[2025-10-12 12:05:07]     "exeErrorDiag": "",
[2025-10-12 12:05:07]     "pilotErrorCode": 0,
[2025-10-12 12:05:07]     "pilotErrorDiag": "",
[2025-10-12 12:05:07]  *** Listing of results directory ***
[2025-10-12 12:05:07] total 416376
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc    557409 Oct  9 21:01 pilot3.tar.gz
[2025-10-12 12:05:07] -rwx------ 1 boinc boinc     36292 Oct  9 21:08 runpilot2-wrapper.sh
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc      5112 Oct  9 21:08 queuedata.json
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc       100 Oct 12 09:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:05:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 09:27 run_atlas
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc       105 Oct 12 09:27 job.xml
[2025-10-12 12:05:07] -rw-r--r-- 2 boinc boinc 219151843 Oct 12 09:27 EVNT.46676267._001024.pool.root.1
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc      6685 Oct 12 09:27 init_data.xml
[2025-10-12 12:05:07] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:27 start_atlas.sh
[2025-10-12 12:05:07] drwxrwx--x 2 boinc boinc      4096 Oct 12 09:27 shared
[2025-10-12 12:05:07] -rw-r--r-- 2 boinc boinc    569673 Oct 12 09:27 input.tar.gz
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc         0 Oct 12 09:27 boinc_lockfile
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc      2549 Oct 12 09:27 pandaJob.out
[2025-10-12 12:05:07] -rw------- 1 boinc boinc    975520 Oct 12 09:27 agis_schedconf.cvmfs.json
[2025-10-12 12:05:07] -rw------- 1 boinc boinc   1560580 Oct 12 09:27 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:05:07] drwx------ 5 boinc boinc      4096 Oct 12 09:27 pilot3
[2025-10-12 12:05:07] -rw------- 1 boinc boinc 200024537 Oct 12 12:02 HITS.46676269._024764.pool.root.1
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc       528 Oct 12 12:03 boinc_task_state.xml
[2025-10-12 12:05:07] -rw------- 1 boinc boinc        95 Oct 12 12:03 pilot_heartbeat.json
[2025-10-12 12:05:07] -rw------- 1 boinc boinc      1032 Oct 12 12:03 memory_monitor_summary.json
[2025-10-12 12:05:07] -rw------- 1 boinc boinc    328364 Oct 12 12:03 log.46676269._024764.job.log.tgz.1
[2025-10-12 12:05:07] -rw------- 1 boinc boinc      7790 Oct 12 12:03 heartbeat.json
[2025-10-12 12:05:07] -rw------- 1 boinc boinc      4906 Oct 12 12:04 pilotlog.txt
[2025-10-12 12:05:07] -rw------- 1 boinc boinc   1315117 Oct 12 12:04 log.46676269._024764.job.log.1
[2025-10-12 12:05:07] -rw------- 1 boinc boinc       357 Oct 12 12:04 output.list
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc       620 Oct 12 12:04 runtime_log
[2025-10-12 12:05:07] -rw------- 1 boinc boinc   1658880 Oct 12 12:04 result.tar.gz
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc      9069 Oct 12 12:04 runtime_log.err
[2025-10-12 12:05:07] -rw------- 1 boinc boinc       663 Oct 12 12:04 qbXLDmlABR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm4YOMDm9saJEm.diag
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc      8192 Oct 12 12:05 boinc_mmap_file
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc        26 Oct 12 12:05 wrapper_checkpoint.txt
[2025-10-12 12:05:07] -rw-r--r-- 1 boinc boinc     20652 Oct 12 12:05 stderr.txt
[2025-10-12 12:05:07] HITS file was successfully produced:
[2025-10-12 12:05:07] -rw------- 1 boinc boinc 200024537 Oct 12 12:02 shared/HITS.pool.root.1
[2025-10-12 12:05:07]  *** Contents of shared directory: ***
[2025-10-12 12:05:07] total 411560
[2025-10-12 12:05:07] -rw-r--r-- 2 boinc boinc 219151843 Oct 12 09:27 ATLAS.root_0
[2025-10-12 12:05:07] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:27 start_atlas.sh
[2025-10-12 12:05:07] -rw-r--r-- 2 boinc boinc    569673 Oct 12 09:27 input.tar.gz
[2025-10-12 12:05:07] -rw------- 1 boinc boinc 200024537 Oct 12 12:02 HITS.pool.root.1
[2025-10-12 12:05:07] -rw------- 1 boinc boinc   1658880 Oct 12 12:04 result.tar.gz
12:05:09 (172597): run_atlas exited; CPU time 36284.614512
12:05:09 (172597): called boinc_finish(0)

</stderr_txt>
]]>

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