Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:29:10 (1664911): wrapper (7.7.26015): starting
14:29:10 (1664911): wrapper: running run_atlas (--nthreads 3)
[2025-10-10 14:29:10] Arguments: --nthreads 3
[2025-10-10 14:29:10] Threads: 3
[2025-10-10 14:29:10] Checking for CVMFS
[2025-10-10 14:29:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 14:29:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 14:29:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 14:29:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 14:29:10] 2.9.2.0 1212649 1532 76104 151546 3 56 3287167 36864000 0 130560 0 1187639 99.990 50602 934 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-10 14:29:10] CVMFS is ok
[2025-10-10 14:29:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 14:29:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 14:29:10] Further information can be found at the LHC@home message board.
[2025-10-10 14:29:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 14:29:10] Checking for apptainer binary...
[2025-10-10 14:29:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 14:29:10] Running /usr/bin/apptainer --version
[2025-10-10 14:29:10] apptainer version 1.4.1-1.1
[2025-10-10 14:29:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 14:29:10] thA325a
[2025-10-10 14:29:10] apptainer works
[2025-10-10 14:29:10] Set ATHENA_PROC_NUMBER=3
[2025-10-10 14:29:10] Set ATHENA_CORE_NUMBER=3
[2025-10-10 14:29:10] Starting ATLAS job with PandaID=6832321681
[2025-10-10 14:29:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 15:43:41]  *** The last 200 lines of the pilot log: ***
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 15:43:41] 2025-10-10 13:43:09,174 | INFO     | job 6832321681 has completed (purged errors)
[2025-10-10 15:43:41] 2025-10-10 13:43:09,175 | INFO     | overall cleanup function is called
[2025-10-10 15:43:41] 2025-10-10 13:43:10,181 | INFO     | --- collectZombieJob: --- 10, [1675069]
[2025-10-10 15:43:41] 2025-10-10 13:43:10,181 | INFO     | zombie collector waiting for pid 1675069
[2025-10-10 15:43:41] 2025-10-10 13:43:10,181 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 15:43:41] 2025-10-10 13:43:10,181 | INFO     | collected zombie processes
[2025-10-10 15:43:41] 2025-10-10 13:43:10,181 | INFO     | will attempt to kill all subprocesses of pid=1675069
[2025-10-10 15:43:41] 2025-10-10 13:43:10,224 | INFO     | process IDs to be killed: [1675069] (in reverse order)
[2025-10-10 15:43:41] 2025-10-10 13:43:10,247 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 15:43:41] 2025-10-10 13:43:10,247 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 15:43:41] 2025-10-10 13:43:10,248 | INFO     | did not find any defunct processes belonging to 1675069
[2025-10-10 15:43:41] 2025-10-10 13:43:10,249 | INFO     | did not find any defunct processes belonging to 1675069
[2025-10-10 15:43:41] 2025-10-10 13:43:10,250 | INFO     | ready for new job
[2025-10-10 15:43:41] 2025-10-10 13:43:10,250 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 15:43:41] 2025-10-10 13:43:10,250 | INFO     | ***************************************
[2025-10-10 15:43:41] 2025-10-10 13:43:10,250 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-10 15:43:41] 2025-10-10 13:43:10,250 | INFO     | ***************************************
[2025-10-10 15:43:41] 2025-10-10 13:43:10,250 | INFO     | 
[2025-10-10 15:43:41] 2025-10-10 13:43:10,251 | INFO     | architecture information:
[2025-10-10 15:43:41] 2025-10-10 13:43:10,251 | INFO     | executing command: cat /etc/os-release
[2025-10-10 15:43:41] 2025-10-10 13:43:10,259 | INFO     | cat /etc/os-release:
[2025-10-10 15:43:41] NAME="CentOS Linux"
[2025-10-10 15:43:41] VERSION="7 (Core)"
[2025-10-10 15:43:41] ID="centos"
[2025-10-10 15:43:41] ID_LIKE="rhel fedora"
[2025-10-10 15:43:41] VERSION_ID="7"
[2025-10-10 15:43:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 15:43:41] ANSI_COLOR="0;31"
[2025-10-10 15:43:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 15:43:41] HOME_URL="https://www.centos.org/"
[2025-10-10 15:43:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 15:43:41] 
[2025-10-10 15:43:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 15:43:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 15:43:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 15:43:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 15:43:41] 
[2025-10-10 15:43:41] 2025-10-10 13:43:10,259 | INFO     | ***************************************
[2025-10-10 15:43:41] 2025-10-10 13:43:10,762 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-10 15:43:41] 2025-10-10 13:43:10,775 | INFO     | sufficient remaining disk space (256273022976 B)
[2025-10-10 15:43:41] 2025-10-10 13:43:10,775 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 15:43:41] 2025-10-10 13:43:10,775 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 15:43:41] 2025-10-10 13:43:10,775 | INFO     | update_server=False
[2025-10-10 15:43:41] 2025-10-10 13:43:10,775 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 15:43:41] 2025-10-10 13:43:10,775 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 15:43:41] 2025-10-10 13:43:10,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 15:43:41] 2025-10-10 13:43:10,776 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 15:43:41] 2025-10-10 13:43:10,925 | INFO     | all data control threads have been joined
[2025-10-10 15:43:41] 2025-10-10 13:43:11,574 | INFO     | all payload control threads have been joined
[2025-10-10 15:43:41] 2025-10-10 13:43:11,616 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 15:43:41] 2025-10-10 13:43:11,616 | INFO     | aborting loop
[2025-10-10 15:43:41] 2025-10-10 13:43:11,730 | INFO     | all job control threads have been joined
[2025-10-10 15:43:41] 2025-10-10 13:43:11,776 | INFO     | [job] queue monitor thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:11,777 | INFO     | [job] retrieve thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:11,931 | INFO     | [data] control thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:12,176 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:12,474 | INFO     | [data] copytool_in thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:12,567 | INFO     | [payload] failed_post thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:12,575 | INFO     | [payload] control thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:12,622 | INFO     | [job] job monitor thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:12,736 | INFO     | [job] control thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:12,781 | INFO     | [data] copytool_out thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:12,804 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:13,035 | INFO     | [job] validate thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:13,044 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:13,092 | INFO     | [payload] validate_post thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:13,179 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:14,782 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 15:43:41] 2025-10-10 13:43:21,077 | INFO     | [monitor] cgroup control has ended
[2025-10-10 15:43:41] 2025-10-10 13:43:21,843 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140249476138816)>', '<ExcThread(monitor, started 140248994539264)>']
[2025-10-10 15:43:41] 2025-10-10 13:43:26,869 | INFO     | all workflow threads have been joined
[2025-10-10 15:43:41] 2025-10-10 13:43:26,869 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 15:43:41] 2025-10-10 13:43:26,870 | INFO     | traces error code: 0
[2025-10-10 15:43:41] 2025-10-10 13:43:26,870 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 15:43:41] 2025-10-10 13:43:41,628 | INFO     | PID=1668633 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 15:43:41] 2025-10-10 13:43:41,628 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 15:43:41] 2025-10-10 13:43:41,628 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 15:43:41] 2025-10-10 13:43:41,628 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 15:43:41] 2025-10-10 13:43:41,628 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 15:43:41] 2025-10-10 13:43:41,628 | INFO     | [monitor] control thread has ended
[2025-10-10 15:43:41] 2025-10-10 13:43:41,674 [wrapper] ==== pilot stdout END ====
[2025-10-10 15:43:41] 2025-10-10 13:43:41,676 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 15:43:41] 2025-10-10 13:43:41,679 [wrapper] pilotpid: 1668633
[2025-10-10 15:43:41] 2025-10-10 13:43:41,681 [wrapper] Pilot exit status: 0
[2025-10-10 15:43:41] 2025-10-10 13:43:41,688 [wrapper] pandaids: 6832321681
[2025-10-10 15:43:41] 2025-10-10 13:43:41,703 [wrapper] cleanup supervisor_pilot 1684790 1668634
[2025-10-10 15:43:41] 2025-10-10 13:43:41,706 [wrapper] Test setup, not cleaning
[2025-10-10 15:43:41] 2025-10-10 13:43:41,708 [wrapper] apfmon messages muted
[2025-10-10 15:43:41] 2025-10-10 13:43:41,710 [wrapper] ==== wrapper stdout END ====
[2025-10-10 15:43:41] 2025-10-10 13:43:41,713 [wrapper] ==== wrapper stderr END ====
[2025-10-10 15:43:41]  *** Error codes and diagnostics ***
[2025-10-10 15:43:41]     "exeErrorCode": 0,
[2025-10-10 15:43:41]     "exeErrorDiag": "",
[2025-10-10 15:43:41]     "pilotErrorCode": 0,
[2025-10-10 15:43:41]     "pilotErrorDiag": "",
[2025-10-10 15:43:41]  *** Listing of results directory ***
[2025-10-10 15:43:41] total 389856
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc    552446 Oct  6 04:53 pilot3.tar.gz
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc      5112 Oct  6 05:20 queuedata.json
[2025-10-10 15:43:41] -rwx------ 1 boinc boinc     36292 Oct  6 05:22 runpilot2-wrapper.sh
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc       100 Oct 10 14:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 15:43:41] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 14:29 run_atlas
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc       105 Oct 10 14:29 job.xml
[2025-10-10 15:43:41] -rw-r--r-- 2 boinc boinc 214966119 Oct 10 14:29 EVNT.46376901._002173.pool.root.1
[2025-10-10 15:43:41] -rw-r--r-- 2 boinc boinc    565607 Oct 10 14:29 input.tar.gz
[2025-10-10 15:43:41] -rw-r--r-- 2 boinc boinc     15120 Oct 10 14:29 start_atlas.sh
[2025-10-10 15:43:41] drwxrwx--x 2 boinc boinc      4096 Oct 10 14:29 shared
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc         0 Oct 10 14:29 boinc_setup_complete
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc      6439 Oct 10 14:29 init_data.xml
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc         0 Oct 10 14:29 boinc_lockfile
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc      2518 Oct 10 14:29 pandaJob.out
[2025-10-10 15:43:41] -rw------- 1 boinc boinc    975525 Oct 10 14:29 agis_schedconf.cvmfs.json
[2025-10-10 15:43:41] -rw------- 1 boinc boinc   1560580 Oct 10 14:29 agis_ddmendpoints.agis.ALL.json
[2025-10-10 15:43:41] drwx------ 4 boinc boinc      4096 Oct 10 14:29 pilot3
[2025-10-10 15:43:41] -rw------- 1 boinc boinc 178591009 Oct 10 15:42 HITS.46376905._104051.pool.root.1
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc       529 Oct 10 15:42 boinc_task_state.xml
[2025-10-10 15:43:41] -rw------- 1 boinc boinc      1021 Oct 10 15:42 memory_monitor_summary.json
[2025-10-10 15:43:41] -rw------- 1 boinc boinc    234527 Oct 10 15:43 log.46376905._104051.job.log.tgz.1
[2025-10-10 15:43:41] -rw------- 1 boinc boinc      7769 Oct 10 15:43 heartbeat.json
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc      8192 Oct 10 15:43 boinc_mmap_file
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc        27 Oct 10 15:43 wrapper_checkpoint.txt
[2025-10-10 15:43:41] -rw------- 1 boinc boinc       747 Oct 10 15:43 pilotlog.txt
[2025-10-10 15:43:41] -rw------- 1 boinc boinc        95 Oct 10 15:43 pilot_heartbeat.json
[2025-10-10 15:43:41] -rw------- 1 boinc boinc    654282 Oct 10 15:43 log.46376905._104051.job.log.1
[2025-10-10 15:43:41] -rw------- 1 boinc boinc       357 Oct 10 15:43 output.list
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc       620 Oct 10 15:43 runtime_log
[2025-10-10 15:43:41] -rw------- 1 boinc boinc    911360 Oct 10 15:43 result.tar.gz
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc      8782 Oct 10 15:43 runtime_log.err
[2025-10-10 15:43:41] -rw------- 1 boinc boinc       659 Oct 10 15:43 hPeMDmlyqP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWNSNDmEB5Yvm.diag
[2025-10-10 15:43:41] -rw-r--r-- 1 boinc boinc     12033 Oct 10 15:43 stderr.txt
[2025-10-10 15:43:41] HITS file was successfully produced:
[2025-10-10 15:43:41] -rw------- 1 boinc boinc 178591009 Oct 10 15:42 shared/HITS.pool.root.1
[2025-10-10 15:43:41]  *** Contents of shared directory: ***
[2025-10-10 15:43:41] total 385804
[2025-10-10 15:43:41] -rw-r--r-- 2 boinc boinc 214966119 Oct 10 14:29 ATLAS.root_0
[2025-10-10 15:43:41] -rw-r--r-- 2 boinc boinc    565607 Oct 10 14:29 input.tar.gz
[2025-10-10 15:43:41] -rw-r--r-- 2 boinc boinc     15120 Oct 10 14:29 start_atlas.sh
[2025-10-10 15:43:41] -rw------- 1 boinc boinc 178591009 Oct 10 15:42 HITS.pool.root.1
[2025-10-10 15:43:41] -rw------- 1 boinc boinc    911360 Oct 10 15:43 result.tar.gz
15:43:43 (1664911): run_atlas exited; CPU time 12640.057915
15:43:43 (1664911): called boinc_finish(0)

</stderr_txt>
]]>

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