Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:25:47 (454260): wrapper (7.7.26015): starting
19:25:47 (454260): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 19:25:47] Arguments: --nthreads 8
[2025-10-09 19:25:47] Threads: 8
[2025-10-09 19:25:47] Checking for CVMFS
[2025-10-09 19:25:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 19:25:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 19:25:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 19:25:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 19:25:49] 2.13.2.0 2038924 64906 180820 151527 0 563 21328831 32503809 55812 16776704 0 397500274 99.740 284445013 35063 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 19:25:49] CVMFS is ok
[2025-10-09 19:25:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 19:25:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 19:25:49] Further information can be found at the LHC@home message board.
[2025-10-09 19:25:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 19:25:49] Checking for apptainer binary...
[2025-10-09 19:25:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 19:25:49] Running /usr/bin/apptainer --version
[2025-10-09 19:25:49] apptainer version 1.4.3-1.el9
[2025-10-09 19:25:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 19:25:49] c8-7-1.aglt2.org
[2025-10-09 19:25:49] apptainer works
[2025-10-09 19:25:49] Set ATHENA_PROC_NUMBER=8
[2025-10-09 19:25:49] Set ATHENA_CORE_NUMBER=8
[2025-10-09 19:25:49] Starting ATLAS job with PandaID=6837349433
[2025-10-09 19:25:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 20:46:53]  *** The last 200 lines of the pilot log: ***
[2025-10-09 20:46:53] 2025-10-10 00:45:35,003 | INFO     | this job has now completed (state=finished)
[2025-10-09 20:46:53] 2025-10-10 00:45:35,003 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 20:46:53] 2025-10-10 00:45:35,003 | INFO     | log transfer has been attempted: DONE
[2025-10-09 20:46:53] 2025-10-10 00:45:35,003 | INFO     | job 6837349433 has finished - writing final server update
[2025-10-09 20:46:53] 2025-10-10 00:45:35,003 | INFO     | total number of processed events: 400 (read)
[2025-10-09 20:46:53] 2025-10-10 00:45:35,009 | INFO     | time since job start (4737s) is within the limit (172800.0s)
[2025-10-09 20:46:53] 2025-10-10 00:45:35,012 | INFO     | executing command: lscpu
[2025-10-09 20:46:53] 2025-10-10 00:45:35,131 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 20:46:53] 2025-10-10 00:45:35,477 | INFO     | monitor loop #314: job 0:6837349433 is in state 'finished'
[2025-10-09 20:46:53] 2025-10-10 00:45:35,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 20:46:53] 2025-10-10 00:45:37,020 | INFO     | time since job start (4739s) is within the limit (172800.0s)
[2025-10-09 20:46:53] 2025-10-10 00:45:37,020 | INFO     | 4742s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-09 20:46:53] 2025-10-10 00:45:37,983 | INFO     | monitor loop #315: job 0:6837349433 is in state 'finished'
[2025-10-09 20:46:53] 2025-10-10 00:45:37,983 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 20:46:53] 2025-10-10 00:45:39,026 | INFO     | time since job start (4741s) is within the limit (172800.0s)
[2025-10-09 20:46:53] 2025-10-10 00:45:40,488 | INFO     | monitor loop #316: job 0:6837349433 is in state 'finished'
[2025-10-09 20:46:53] 2025-10-10 00:45:40,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 20:46:53] 2025-10-10 00:45:41,033 | INFO     | time since job start (4743s) is within the limit (172800.0s)
[2025-10-09 20:46:53] 2025-10-10 00:45:43,002 | INFO     | monitor loop #317: job 0:6837349433 is in state 'finished'
[2025-10-09 20:46:53] 2025-10-10 00:45:43,004 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 20:46:53] 2025-10-10 00:45:43,040 | INFO     | time since job start (4745s) is within the limit (172800.0s)
[2025-10-09 20:46:53] 2025-10-10 00:45:45,046 | INFO     | time since job start (4747s) is within the limit (172800.0s)
[2025-10-09 20:46:53] 2025-10-10 00:45:45,509 | INFO     | monitor loop #318: job 0:6837349433 is in state 'finished'
[2025-10-09 20:46:53] 2025-10-10 00:45:45,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 20:46:53] 2025-10-10 00:45:47,053 | INFO     | time since job start (4749s) is within the limit (172800.0s)
[2025-10-09 20:46:53] 2025-10-10 00:45:48,023 | INFO     | monitor loop #319: job 0:6837349433 is in state 'finished'
[2025-10-09 20:46:53] 2025-10-10 00:45:48,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 20:46:53] 2025-10-10 00:45:49,219 | INFO     | PID=470975 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 20:46:53] 2025-10-10 00:45:49,220 | INFO     | .. there are 59 such processes running
[2025-10-09 20:46:53] 2025-10-10 00:45:50,232 | INFO     | time since job start (4752s) is within the limit (172800.0s)
[2025-10-09 20:46:53] 2025-10-10 00:45:50,539 | INFO     | monitor loop #320: job 0:6837349433 is in state 'finished'
[2025-10-09 20:46:53] 2025-10-10 00:45:50,539 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 20:46:53] 2025-10-10 00:45:52,238 | INFO     | time since job start (4754s) is within the limit (172800.0s)
[2025-10-09 20:46:53] 2025-10-10 00:45:53,044 | INFO     | monitor loop #321: job 0:6837349433 is in state 'finished'
[2025-10-09 20:46:53] 2025-10-10 00:45:53,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 20:46:53] 2025-10-10 00:45:54,257 | INFO     | time since job start (4756s) is within the limit (172800.0s)
[2025-10-09 20:46:53] 2025-10-10 00:45:54,962 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-09 20:46:53] 2025-10-10 00:45:54,970 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9947265624996
[2025-10-09 20:46:53] 2025-10-10 00:45:54,982 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6837349433/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 20:46:53] 2025-10-10 00:45:54,982 | INFO     | extracted standard info from prmon json
[2025-10-09 20:46:53] 2025-10-10 00:45:54,982 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 20:46:53] 2025-10-10 00:45:54,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 20:46:53] 2025-10-10 00:45:54,983 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 20:46:53] 2025-10-10 00:45:54,983 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 20:46:53] 2025-10-10 00:45:54,984 | INFO     | fitting pss+swap vs Time
[2025-10-09 20:46:53] 2025-10-10 00:45:54,984 | INFO     | sum of square deviations: 101841210.86956538
[2025-10-09 20:46:53] 2025-10-10 00:45:54,984 | INFO     | sum of deviations: -1162469821.6956522
[2025-10-09 20:46:53] 2025-10-10 00:45:54,984 | INFO     | mean x: 1760054906.0434783
[2025-10-09 20:46:53] 2025-10-10 00:45:54,984 | INFO     | mean y: 2540911.8985507246
[2025-10-09 20:46:53] 2025-10-10 00:45:54,984 | INFO     | -- intersect: 20092745018.204575
[2025-10-09 20:46:53] 2025-10-10 00:45:54,984 | INFO     | intersect: 20092745018.204575
[2025-10-09 20:46:53] 2025-10-10 00:45:54,984 | INFO     | chi2: 0.03074657104946876
[2025-10-09 20:46:53] 2025-10-10 00:45:54,984 | INFO     | -- intersect: 20092745018.204575
[2025-10-09 20:46:53] 2025-10-10 00:45:54,985 | INFO     | current memory leak: -11.41 B/s (using 69 data points, chi2=0.03)
[2025-10-09 20:46:53] 2025-10-10 00:45:54,985 | INFO     | could have reported an average CPU frequency of 3797 MHz (6 samples)
[2025-10-09 20:46:53] 2025-10-10 00:45:54,985 | INFO     | ..............................
[2025-10-09 20:46:53] 2025-10-10 00:45:54,985 | INFO     | . Timing measurements:
[2025-10-09 20:46:53] 2025-10-10 00:45:54,985 | INFO     | . get job = 0 s
[2025-10-09 20:46:53] 2025-10-10 00:45:54,985 | INFO     | . initial setup = 3 s
[2025-10-09 20:46:53] 2025-10-10 00:45:54,985 | INFO     | . payload setup = 36 s
[2025-10-09 20:46:53] 2025-10-10 00:45:54,985 | INFO     | . stage-in = 0 s
[2025-10-09 20:46:53] 2025-10-10 00:45:54,985 | INFO     | . payload execution = 4631 s
[2025-10-09 20:46:53] 2025-10-10 00:45:54,985 | INFO     | . stage-out = 1 s
[2025-10-09 20:46:53] 2025-10-10 00:45:54,985 | INFO     | . log creation = 0 s
[2025-10-09 20:46:53] 2025-10-10 00:45:54,985 | INFO     | ..............................
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | 
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | job summary report
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | --------------------------------------------------
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | PanDA job id: 6837349433
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | task id: 46676269
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | errors: (none)
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | pilot state: finished 
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | transexitcode: 0
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | exeerrorcode: 0
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | exeerrordiag: 
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | exitcode: 0
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | exitmsg: OK
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | cpuconsumptiontime: 22998 s
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | nevents: 400
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | neventsw: 0
[2025-10-09 20:46:53] 2025-10-10 00:45:55,256 | INFO     | pid: 491562
[2025-10-09 20:46:53] 2025-10-10 00:45:55,257 | INFO     | pgrp: 491562
[2025-10-09 20:46:53] 2025-10-10 00:45:55,257 | INFO     | corecount: 8
[2025-10-09 20:46:53] 2025-10-10 00:45:55,257 | INFO     | event service: False
[2025-10-09 20:46:53] 2025-10-10 00:45:55,257 | INFO     | sizes: {0: 2348683, 1: 2348882, 12: 2348882, 23: 2348910, 25: 2349200, 33: 2349228, 4671: 2375521, 4672: 2384575, 4695: 2384713}
[2025-10-09 20:46:53] 2025-10-10 00:45:55,257 | INFO     | --------------------------------------------------
[2025-10-09 20:46:53] 2025-10-10 00:45:55,257 | INFO     | 
[2025-10-09 20:46:53] 2025-10-10 00:45:55,257 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-09 20:46:53] 2025-10-10 00:45:55,328 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,328 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,328 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,328 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,328 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,328 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,328 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,328 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,328 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | job 6837349433 has completed (purged errors)
[2025-10-09 20:46:53] 2025-10-10 00:45:55,329 | INFO     | overall cleanup function is called
[2025-10-09 20:46:53] 2025-10-10 00:45:56,337 | INFO     | --- collectZombieJob: --- 10, [491562]
[2025-10-09 20:46:53] 2025-10-10 00:45:56,337 | INFO     | zombie collector waiting for pid 491562
[2025-10-09 20:46:53] 2025-10-10 00:45:56,337 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 20:46:53] 2025-10-10 00:45:56,337 | INFO     | collected zombie processes
[2025-10-09 20:46:53] 2025-10-10 00:45:56,337 | INFO     | will attempt to kill all subprocesses of pid=491562
[2025-10-09 20:46:53] 2025-10-10 00:45:57,373 | INFO     | process IDs to be killed: [491562] (in reverse order)
[2025-10-09 20:46:53] 2025-10-10 00:45:57,743 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 20:46:53] 2025-10-10 00:45:57,743 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 20:46:53] 2025-10-10 00:45:57,785 | INFO     | did not find any defunct processes belonging to 491562
[2025-10-09 20:46:53] 2025-10-10 00:45:57,816 | INFO     | did not find any defunct processes belonging to 491562
[2025-10-09 20:46:53] 2025-10-10 00:45:57,816 | INFO     | ready for new job
[2025-10-09 20:46:53] 2025-10-10 00:45:57,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 20:46:53] 2025-10-10 00:45:57,818 | INFO     | ***************************************
[2025-10-09 20:46:53] 2025-10-10 00:45:57,818 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 20:46:53] 2025-10-10 00:45:57,818 | INFO     | ***************************************
[2025-10-09 20:46:53] 2025-10-10 00:45:57,818 | INFO     | 
[2025-10-09 20:46:53] 2025-10-10 00:45:57,823 | INFO     | architecture information:
[2025-10-09 20:46:53] 2025-10-10 00:45:57,823 | INFO     | executing command: cat /etc/os-release
[2025-10-09 20:46:53] 2025-10-10 00:45:57,865 | INFO     | cat /etc/os-release:
[2025-10-09 20:46:53] NAME="CentOS Linux"
[2025-10-09 20:46:53] VERSION="7 (Core)"
[2025-10-09 20:46:53] ID="centos"
[2025-10-09 20:46:53] ID_LIKE="rhel fedora"
[2025-10-09 20:46:53] VERSION_ID="7"
[2025-10-09 20:46:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 20:46:53] ANSI_COLOR="0;31"
[2025-10-09 20:46:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 20:46:53] HOME_URL="https://www.centos.org/"
[2025-10-09 20:46:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 20:46:53] 
[2025-10-09 20:46:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 20:46:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 20:46:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 20:46:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 20:46:53] 
[2025-10-09 20:46:53] 2025-10-10 00:45:57,865 | INFO     | ***************************************
[2025-10-09 20:46:53] 2025-10-10 00:45:58,374 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-09 20:46:53] 2025-10-10 00:45:58,419 | INFO     | sufficient remaining disk space (92737110016 B)
[2025-10-09 20:46:53] 2025-10-10 00:45:58,419 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 20:46:53] 2025-10-10 00:45:58,419 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 20:46:53] 2025-10-10 00:45:58,419 | INFO     | update_server=False
[2025-10-09 20:46:53] 2025-10-10 00:45:58,419 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 20:46:53] 2025-10-10 00:45:58,420 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 20:46:53] 2025-10-10 00:45:58,788 | INFO     | all job control threads have been joined
[2025-10-09 20:46:53] 2025-10-10 00:45:59,074 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 20:46:53] 2025-10-10 00:45:59,074 | INFO     | aborting loop
[2025-10-09 20:46:53] 2025-10-10 00:45:59,210 | INFO     | all data control threads have been joined
[2025-10-09 20:46:53] 2025-10-10 00:45:59,259 | INFO     | all payload control threads have been joined
[2025-10-09 20:46:53] 2025-10-10 00:45:59,425 | INFO     | [job] retrieve thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:45:59,581 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:45:59,794 | INFO     | [job] control thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:45:59,906 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:45:59,944 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:46:00,053 | INFO     | [job] validate thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:46:00,061 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 20:46:53] 2025-10-10 00:46:00,080 | INFO     | [job] job monitor thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:46:00,098 | INFO     | [data] copytool_in thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:46:00,216 | INFO     | [data] control thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:46:00,265 | INFO     | [payload] control thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:46:00,338 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:46:00,414 | INFO     | [payload] failed_post thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:46:00,427 | INFO     | [data] copytool_out thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:46:00,754 | INFO     | [payload] validate_post thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:46:00,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 20:46:53] 2025-10-10 00:46:01,076 | INFO     | [job] queue monitor thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:46:04,806 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 20:46:53] 2025-10-10 00:46:28,265 | INFO     | PID=470975 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-09 20:46:53] 2025-10-10 00:46:28,265 | INFO     | .. there are 59 such processes running
[2025-10-09 20:46:53] 2025-10-10 00:46:28,266 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 20:46:53] 2025-10-10 00:46:28,266 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 20:46:53] 2025-10-10 00:46:28,266 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 20:46:53] 2025-10-10 00:46:46,197 | INFO     | [monitor] cgroup control has ended
[2025-10-09 20:46:53] 2025-10-10 00:46:46,752 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140237224736576)>', '<ExcThread(monitor, started 140236495505152)>']
[2025-10-09 20:46:53] 2025-10-10 00:46:47,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 20:46:53] 2025-10-10 00:46:47,382 | INFO     | [monitor] control thread has ended
[2025-10-09 20:46:53] 2025-10-10 00:46:51,778 | INFO     | all workflow threads have been joined
[2025-10-09 20:46:53] 2025-10-10 00:46:51,782 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 20:46:53] 2025-10-10 00:46:51,782 | INFO     | traces error code: 0
[2025-10-09 20:46:53] 2025-10-10 00:46:51,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 20:46:53] 2025-10-10 00:46:52,234 [wrapper] ==== pilot stdout END ====
[2025-10-09 20:46:53] 2025-10-10 00:46:52,271 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 20:46:53] 2025-10-10 00:46:52,293 [wrapper] pilotpid: 470975
[2025-10-09 20:46:53] 2025-10-10 00:46:52,306 [wrapper] Pilot exit status: 0
[2025-10-09 20:46:53] 2025-10-10 00:46:52,428 [wrapper] pandaids: 6837349433
[2025-10-09 20:46:53] 2025-10-10 00:46:52,817 [wrapper] cleanup supervisor_pilot 1075676 470976
[2025-10-09 20:46:53] 2025-10-10 00:46:52,845 [wrapper] Test setup, not cleaning
[2025-10-09 20:46:53] 2025-10-10 00:46:52,868 [wrapper] apfmon messages muted
[2025-10-09 20:46:53] 2025-10-10 00:46:52,898 [wrapper] ==== wrapper stdout END ====
[2025-10-09 20:46:53] 2025-10-10 00:46:52,920 [wrapper] ==== wrapper stderr END ====
[2025-10-09 20:46:53]  *** Error codes and diagnostics ***
[2025-10-09 20:46:53]     "exeErrorCode": 0,
[2025-10-09 20:46:53]     "exeErrorDiag": "",
[2025-10-09 20:46:53]     "pilotErrorCode": 0,
[2025-10-09 20:46:53]     "pilotErrorDiag": "",
[2025-10-09 20:46:53]  *** Listing of results directory ***
[2025-10-09 20:46:53] total 417120
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 11:06 pilot3.tar.gz
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 11:07 queuedata.json
[2025-10-09 20:46:53] -rwx------. 1 boincer umatlas     36292 Oct  9 11:08 runpilot2-wrapper.sh
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas       100 Oct  9 19:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 20:46:53] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 19:25 run_atlas
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas       105 Oct  9 19:25 job.xml
[2025-10-09 20:46:53] -rw-r--r--. 2 boincer umatlas 219800188 Oct  9 19:25 EVNT.46676267._000874.pool.root.1
[2025-10-09 20:46:53] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 19:25 start_atlas.sh
[2025-10-09 20:46:53] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 19:25 shared
[2025-10-09 20:46:53] -rw-r--r--. 2 boincer umatlas    569680 Oct  9 19:25 input.tar.gz
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas         0 Oct  9 19:25 boinc_lockfile
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas      2548 Oct  9 19:25 pandaJob.out
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas    975454 Oct  9 19:26 agis_schedconf.cvmfs.json
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas   1560457 Oct  9 19:26 agis_ddmendpoints.agis.ALL.json
[2025-10-09 20:46:53] drwx------. 5 boincer umatlas      4096 Oct  9 19:26 pilot3
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas      7161 Oct  9 20:39 init_data.xml
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas 201456441 Oct  9 20:45 HITS.46676269._020950.pool.root.1
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas       529 Oct  9 20:45 boinc_task_state.xml
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas      1032 Oct  9 20:45 memory_monitor_summary.json
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas    336082 Oct  9 20:45 log.46676269._020950.job.log.tgz.1
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas      7779 Oct  9 20:45 heartbeat.json
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas        95 Oct  9 20:46 pilot_heartbeat.json
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 20:46 boinc_mmap_file
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas        27 Oct  9 20:46 wrapper_checkpoint.txt
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas      4823 Oct  9 20:46 pilotlog.txt
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas    647923 Oct  9 20:46 log.46676269._020950.job.log.1
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas       357 Oct  9 20:46 output.list
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas       620 Oct  9 20:46 runtime_log
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas   1003520 Oct  9 20:46 result.tar.gz
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas      8693 Oct  9 20:46 runtime_log.err
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas       649 Oct  9 20:46 1AwKDmYQ7Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEWaNDmoVJf5m.diag
[2025-10-09 20:46:53] -rw-r--r--. 1 boincer umatlas     22331 Oct  9 20:46 stderr.txt
[2025-10-09 20:46:53] HITS file was successfully produced:
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas 201456441 Oct  9 20:45 shared/HITS.pool.root.1
[2025-10-09 20:46:53]  *** Contents of shared directory: ***
[2025-10-09 20:46:53] total 412952
[2025-10-09 20:46:53] -rw-r--r--. 2 boincer umatlas 219800188 Oct  9 19:25 ATLAS.root_0
[2025-10-09 20:46:53] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 19:25 start_atlas.sh
[2025-10-09 20:46:53] -rw-r--r--. 2 boincer umatlas    569680 Oct  9 19:25 input.tar.gz
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas 201456441 Oct  9 20:45 HITS.pool.root.1
[2025-10-09 20:46:53] -rw-------. 1 boincer umatlas   1003520 Oct  9 20:46 result.tar.gz
20:46:54 (454260): run_atlas exited; CPU time 23139.452400
20:46:54 (454260): called boinc_finish(0)

</stderr_txt>
]]>

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