Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:10 (2869786): wrapper (7.7.26015): starting
00:03:10 (2869786): wrapper: running run_atlas (--nthreads 9)
[2025-10-10 00:03:10] Arguments: --nthreads 9
[2025-10-10 00:03:10] Threads: 9
[2025-10-10 00:03:10] Checking for CVMFS
[2025-10-10 00:03:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 00:03:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 00:03:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 00:03:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 00:03:11] 2.13.2.0 129325 105768 484676 151533 3 320 33431853 39288832 18732 16776704 0 160456623 99.511 209397416 29786 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 00:03:11] CVMFS is ok
[2025-10-10 00:03:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 00:03:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 00:03:12] Further information can be found at the LHC@home message board.
[2025-10-10 00:03:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 00:03:12] Checking for apptainer binary...
[2025-10-10 00:03:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 00:03:12] Running /usr/bin/apptainer --version
[2025-10-10 00:03:12] apptainer version 1.4.3-1.el9
[2025-10-10 00:03:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 00:03:12] c-211-28.aglt2.org
[2025-10-10 00:03:12] apptainer works
[2025-10-10 00:03:12] Set ATHENA_PROC_NUMBER=9
[2025-10-10 00:03:12] Set ATHENA_CORE_NUMBER=9
[2025-10-10 00:03:12] Starting ATLAS job with PandaID=6837354767
[2025-10-10 00:03:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 19:20:04]  *** The last 200 lines of the pilot log: ***
[2025-10-10 19:20:04] 2025-10-10 23:19:25,706 | INFO     | extracted standard info from prmon json
[2025-10-10 19:20:04] 2025-10-10 23:19:25,706 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 19:20:04] 2025-10-10 23:19:25,706 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 19:20:04] 2025-10-10 23:19:25,711 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 19:20:04] 2025-10-10 23:19:25,711 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 19:20:04] 2025-10-10 23:19:25,778 | INFO     | fitting pss+swap vs Time
[2025-10-10 19:20:04] 2025-10-10 23:19:25,780 | INFO     | sum of square deviations: 452168991942.96783
[2025-10-10 19:20:04] 2025-10-10 23:19:25,818 | INFO     | sum of deviations: 1197115743616.7766
[2025-10-10 19:20:04] 2025-10-10 23:19:25,819 | INFO     | mean x: 1760103769.2689595
[2025-10-10 19:20:04] 2025-10-10 23:19:25,819 | INFO     | mean y: 2545229.777777778
[2025-10-10 19:20:04] 2025-10-10 23:19:25,819 | INFO     | -- intersect: -4657323027.744986
[2025-10-10 19:20:04] 2025-10-10 23:19:25,819 | INFO     | intersect: -4657323027.744986
[2025-10-10 19:20:04] 2025-10-10 23:19:25,821 | INFO     | chi2: 4.829085697545472
[2025-10-10 19:20:04] 2025-10-10 23:19:25,823 | INFO     | sum of square deviations: 446214221381.0421
[2025-10-10 19:20:04] 2025-10-10 23:19:25,861 | INFO     | sum of deviations: 1267324563694.898
[2025-10-10 19:20:04] 2025-10-10 23:19:25,862 | INFO     | mean x: 1760103616.7714791
[2025-10-10 19:20:04] 2025-10-10 23:19:25,862 | INFO     | mean y: 2547020.798051373
[2025-10-10 19:20:04] 2025-10-10 23:19:25,862 | INFO     | -- intersect: -4996447724.996702
[2025-10-10 19:20:04] 2025-10-10 23:19:25,862 | INFO     | intersect: -4996447724.996702
[2025-10-10 19:20:04] 2025-10-10 23:19:25,864 | INFO     | chi2: 4.076123123699634
[2025-10-10 19:20:04] 2025-10-10 23:19:25,864 | INFO     | current chi2=4.076123123699634 (change=15.592238800577807 %)
[2025-10-10 19:20:04] 2025-10-10 23:19:25,864 | INFO     | right removable region: 1128
[2025-10-10 19:20:04] 2025-10-10 23:19:25,866 | INFO     | sum of square deviations: 446213758512.49786
[2025-10-10 19:20:04] 2025-10-10 23:19:25,894 | INFO     | monitor loop #3051: job 0:6837354767 is in state 'finished'
[2025-10-10 19:20:04] 2025-10-10 23:19:25,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 19:20:04] 2025-10-10 23:19:25,916 | INFO     | sum of deviations: 862271429738.7842
[2025-10-10 19:20:04] 2025-10-10 23:19:25,917 | INFO     | mean x: 1760103921.7723649
[2025-10-10 19:20:04] 2025-10-10 23:19:25,917 | INFO     | mean y: 2553799.8007085915
[2025-10-10 19:20:04] 2025-10-10 23:19:25,917 | INFO     | -- intersect: -3398702428.0997353
[2025-10-10 19:20:04] 2025-10-10 23:19:25,917 | INFO     | intersect: -3398702428.0997353
[2025-10-10 19:20:04] 2025-10-10 23:19:25,923 | INFO     | chi2: 1.7910530004722016
[2025-10-10 19:20:04] 2025-10-10 23:19:25,923 | INFO     | current chi2=1.7910530004722016 (change=62.911136545318335 %)
[2025-10-10 19:20:04] 2025-10-10 23:19:25,925 | INFO     | sum of square deviations: 440311382528.2373
[2025-10-10 19:20:04] 2025-10-10 23:19:25,995 | INFO     | sum of deviations: 745631373097.8168
[2025-10-10 19:20:04] 2025-10-10 23:19:25,995 | INFO     | mean x: 1760104074.2713523
[2025-10-10 19:20:04] 2025-10-10 23:19:25,995 | INFO     | mean y: 2556813.5284697507
[2025-10-10 19:20:04] 2025-10-10 23:19:25,996 | INFO     | -- intersect: -2978035716.599561
[2025-10-10 19:20:04] 2025-10-10 23:19:25,996 | INFO     | intersect: -2978035716.599561
[2025-10-10 19:20:04] 2025-10-10 23:19:25,997 | INFO     | chi2: 1.4819230025899404
[2025-10-10 19:20:04] 2025-10-10 23:19:25,998 | INFO     | current chi2=1.4819230025899404 (change=17.259678959849918 %)
[2025-10-10 19:20:04] 2025-10-10 23:19:25,998 | INFO     | left removable region: 20
[2025-10-10 19:20:04] 2025-10-10 23:19:26,000 | INFO     | sum of square deviations: 421774788930.0974
[2025-10-10 19:20:04] 2025-10-10 23:19:26,033 | INFO     | sum of deviations: 651837679159.0321
[2025-10-10 19:20:04] 2025-10-10 23:19:26,033 | INFO     | mean x: 1760104196.2617328
[2025-10-10 19:20:04] 2025-10-10 23:19:26,034 | INFO     | mean y: 2562989.4205776174
[2025-10-10 19:20:04] 2025-10-10 23:19:26,034 | INFO     | -- intersect: -2717614376.5136127
[2025-10-10 19:20:04] 2025-10-10 23:19:26,034 | INFO     | intersect: -2717614376.5136127
[2025-10-10 19:20:04] 2025-10-10 23:19:26,036 | INFO     | chi2: 0.40148647063419335
[2025-10-10 19:20:04] 2025-10-10 23:19:26,036 | INFO     | -- intersect: -2717614376.5136127
[2025-10-10 19:20:04] 2025-10-10 23:19:26,036 | INFO     | current memory leak: 1.55 B/s (using 1108 data points, chi2=0.40)
[2025-10-10 19:20:04] 2025-10-10 23:19:26,037 | INFO     | could have reported an average CPU frequency of 2899 MHz (41 samples)
[2025-10-10 19:20:04] 2025-10-10 23:19:26,037 | INFO     | ..............................
[2025-10-10 19:20:04] 2025-10-10 23:19:26,038 | INFO     | . Timing measurements:
[2025-10-10 19:20:04] 2025-10-10 23:19:26,038 | INFO     | . get job = 0 s
[2025-10-10 19:20:04] 2025-10-10 23:19:26,038 | INFO     | . initial setup = 9 s
[2025-10-10 19:20:04] 2025-10-10 23:19:26,038 | INFO     | . payload setup = 32 s
[2025-10-10 19:20:04] 2025-10-10 23:19:26,038 | INFO     | . stage-in = 0 s
[2025-10-10 19:20:04] 2025-10-10 23:19:26,038 | INFO     | . payload execution = 69149 s
[2025-10-10 19:20:04] 2025-10-10 23:19:26,038 | INFO     | . stage-out = 4 s
[2025-10-10 19:20:04] 2025-10-10 23:19:26,038 | INFO     | . log creation = 0 s
[2025-10-10 19:20:04] 2025-10-10 23:19:26,039 | INFO     | ..............................
[2025-10-10 19:20:04] 2025-10-10 23:19:26,116 | INFO     | time since job start (69308s) is within the limit (172800.0s)
[2025-10-10 19:20:04] 2025-10-10 23:19:26,292 | INFO     | 
[2025-10-10 19:20:04] 2025-10-10 23:19:26,292 | INFO     | job summary report
[2025-10-10 19:20:04] 2025-10-10 23:19:26,292 | INFO     | --------------------------------------------------
[2025-10-10 19:20:04] 2025-10-10 23:19:26,292 | INFO     | PanDA job id: 6837354767
[2025-10-10 19:20:04] 2025-10-10 23:19:26,292 | INFO     | task id: 46676269
[2025-10-10 19:20:04] 2025-10-10 23:19:26,293 | INFO     | errors: (none)
[2025-10-10 19:20:04] 2025-10-10 23:19:26,293 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 19:20:04] 2025-10-10 23:19:26,293 | INFO     | pilot state: finished 
[2025-10-10 19:20:04] 2025-10-10 23:19:26,293 | INFO     | transexitcode: 0
[2025-10-10 19:20:04] 2025-10-10 23:19:26,293 | INFO     | exeerrorcode: 0
[2025-10-10 19:20:04] 2025-10-10 23:19:26,293 | INFO     | exeerrordiag: 
[2025-10-10 19:20:04] 2025-10-10 23:19:26,294 | INFO     | exitcode: 0
[2025-10-10 19:20:04] 2025-10-10 23:19:26,294 | INFO     | exitmsg: OK
[2025-10-10 19:20:04] 2025-10-10 23:19:26,294 | INFO     | cpuconsumptiontime: 80143 s
[2025-10-10 19:20:04] 2025-10-10 23:19:26,294 | INFO     | nevents: 400
[2025-10-10 19:20:04] 2025-10-10 23:19:26,294 | INFO     | neventsw: 0
[2025-10-10 19:20:04] 2025-10-10 23:19:26,294 | INFO     | pid: 2913989
[2025-10-10 19:20:04] 2025-10-10 23:19:26,294 | INFO     | pgrp: 2913989
[2025-10-10 19:20:04] 2025-10-10 23:19:26,295 | INFO     | corecount: 9
[2025-10-10 19:20:04] 2025-10-10 23:19:26,295 | INFO     | event service: False
[2025-10-10 19:20:04] 2025-10-10 23:19:26,295 | INFO     | sizes: {0: 2347976, 1: 2348577, 3: 2348661, 6: 2348689, 8: 2348888, 10: 2348916, 11: 2349072, 22: 2349100, 33: 2349128, 44: 2349184, 55: 2349782, 69185: 2403342, 6
[2025-10-10 19:20:04] 2025-10-10 23:19:26,295 | INFO     | --------------------------------------------------
[2025-10-10 19:20:04] 2025-10-10 23:19:26,295 | INFO     | 
[2025-10-10 19:20:04] 2025-10-10 23:19:26,295 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-10 19:20:04] 2025-10-10 23:19:26,584 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,584 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,585 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,585 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,585 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,585 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,585 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,585 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,586 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,586 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,586 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,586 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,586 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,586 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,587 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,587 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,587 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,587 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 19:20:04] 2025-10-10 23:19:26,587 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,587 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 19:20:04] 2025-10-10 23:19:26,587 | INFO     | job 6837354767 has completed (purged errors)
[2025-10-10 19:20:04] 2025-10-10 23:19:26,590 | INFO     | overall cleanup function is called
[2025-10-10 19:20:04] 2025-10-10 23:19:27,509 [wrapper] supervise_pilot (15 min periods counter: 78)
[2025-10-10 19:20:04] 2025-10-10 23:19:27,629 | INFO     | --- collectZombieJob: --- 10, [2913989]
[2025-10-10 19:20:04] 2025-10-10 23:19:27,629 | INFO     | zombie collector waiting for pid 2913989
[2025-10-10 19:20:04] 2025-10-10 23:19:27,629 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 19:20:04] 2025-10-10 23:19:27,629 | INFO     | collected zombie processes
[2025-10-10 19:20:04] 2025-10-10 23:19:27,630 | INFO     | will attempt to kill all subprocesses of pid=2913989
[2025-10-10 19:20:04] 2025-10-10 23:19:29,871 | INFO     | PID=2885336 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 19:20:04] 2025-10-10 23:19:29,871 | INFO     | .. there are 28 such processes running
[2025-10-10 19:20:04] 2025-10-10 23:19:30,198 | INFO     | process IDs to be killed: [2913989] (in reverse order)
[2025-10-10 19:20:04] 2025-10-10 23:19:30,834 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 19:20:04] 2025-10-10 23:19:30,835 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 19:20:04] 2025-10-10 23:19:30,892 | INFO     | did not find any defunct processes belonging to 2913989
[2025-10-10 19:20:04] 2025-10-10 23:19:30,985 | INFO     | did not find any defunct processes belonging to 2913989
[2025-10-10 19:20:04] 2025-10-10 23:19:30,985 | INFO     | ready for new job
[2025-10-10 19:20:04] 2025-10-10 23:19:30,986 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 19:20:04] 2025-10-10 23:19:30,990 | INFO     | ***************************************
[2025-10-10 19:20:04] 2025-10-10 23:19:30,990 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 19:20:04] 2025-10-10 23:19:30,991 | INFO     | ***************************************
[2025-10-10 19:20:04] 2025-10-10 23:19:30,991 | INFO     | 
[2025-10-10 19:20:04] 2025-10-10 23:19:30,993 | INFO     | architecture information:
[2025-10-10 19:20:04] 2025-10-10 23:19:30,993 | INFO     | executing command: cat /etc/os-release
[2025-10-10 19:20:04] 2025-10-10 23:19:31,013 | INFO     | cat /etc/os-release:
[2025-10-10 19:20:04] NAME="CentOS Linux"
[2025-10-10 19:20:04] VERSION="7 (Core)"
[2025-10-10 19:20:04] ID="centos"
[2025-10-10 19:20:04] ID_LIKE="rhel fedora"
[2025-10-10 19:20:04] VERSION_ID="7"
[2025-10-10 19:20:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 19:20:04] ANSI_COLOR="0;31"
[2025-10-10 19:20:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 19:20:04] HOME_URL="https://www.centos.org/"
[2025-10-10 19:20:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 19:20:04] 
[2025-10-10 19:20:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 19:20:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 19:20:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 19:20:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 19:20:04] 
[2025-10-10 19:20:04] 2025-10-10 23:19:31,013 | INFO     | ***************************************
[2025-10-10 19:20:04] 2025-10-10 23:19:31,517 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-10 19:20:04] 2025-10-10 23:19:31,568 | INFO     | sufficient remaining disk space (52923727872 B)
[2025-10-10 19:20:04] 2025-10-10 23:19:31,569 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 19:20:04] 2025-10-10 23:19:31,569 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 19:20:04] 2025-10-10 23:19:31,569 | INFO     | update_server=False
[2025-10-10 19:20:04] 2025-10-10 23:19:31,569 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 19:20:04] 2025-10-10 23:19:31,569 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 19:20:04] 2025-10-10 23:19:31,570 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 19:20:04] 2025-10-10 23:19:31,751 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 19:20:04] 2025-10-10 23:19:31,850 | INFO     | all data control threads have been joined
[2025-10-10 19:20:04] 2025-10-10 23:19:31,947 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 19:20:04] 2025-10-10 23:19:31,947 | INFO     | aborting loop
[2025-10-10 19:20:04] 2025-10-10 23:19:32,070 | INFO     | all job control threads have been joined
[2025-10-10 19:20:04] 2025-10-10 23:19:32,471 | INFO     | all payload control threads have been joined
[2025-10-10 19:20:04] 2025-10-10 23:19:32,575 | INFO     | [job] retrieve thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:32,576 | INFO     | [job] queue monitor thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:32,597 | INFO     | [payload] validate_post thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:32,609 | INFO     | [data] copytool_in thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:32,856 | INFO     | [data] control thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:32,953 | INFO     | [job] job monitor thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:33,049 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:33,076 | INFO     | [job] control thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:33,280 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:33,332 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:33,372 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:33,477 | INFO     | [payload] control thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:33,577 | INFO     | [data] copytool_out thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:33,779 | INFO     | [job] validate thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:34,006 | INFO     | [payload] failed_post thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:35,760 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 19:20:04] 2025-10-10 23:19:41,505 | INFO     | [monitor] cgroup control has ended
[2025-10-10 19:20:04] 2025-10-10 23:19:42,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695927686976)>', '<ExcThread(monitor, started 139695187015424)>']
[2025-10-10 19:20:04] 2025-10-10 23:19:47,775 | INFO     | all workflow threads have been joined
[2025-10-10 19:20:04] 2025-10-10 23:19:47,775 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 19:20:04] 2025-10-10 23:19:47,775 | INFO     | traces error code: 0
[2025-10-10 19:20:04] 2025-10-10 23:19:47,776 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 19:20:04] 2025-10-10 23:20:03,384 | INFO     | PID=2885336 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 19:20:04] 2025-10-10 23:20:03,385 | INFO     | .. there are 28 such processes running
[2025-10-10 19:20:04] 2025-10-10 23:20:03,385 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 19:20:04] 2025-10-10 23:20:03,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 19:20:04] 2025-10-10 23:20:03,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 19:20:04] 2025-10-10 23:20:03,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 19:20:04] 2025-10-10 23:20:03,386 | INFO     | [monitor] control thread has ended
[2025-10-10 19:20:04] 2025-10-10 23:20:03,553 [wrapper] ==== pilot stdout END ====
[2025-10-10 19:20:04] 2025-10-10 23:20:03,568 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 19:20:04] 2025-10-10 23:20:03,584 [wrapper] pilotpid: 2885336
[2025-10-10 19:20:04] 2025-10-10 23:20:03,625 [wrapper] Pilot exit status: 0
[2025-10-10 19:20:04] 2025-10-10 23:20:03,746 [wrapper] pandaids: 6837354767
[2025-10-10 19:20:04] 2025-10-10 23:20:03,851 [wrapper] cleanup supervisor_pilot 1568469 2885337
[2025-10-10 19:20:04] 2025-10-10 23:20:03,854 [wrapper] Test setup, not cleaning
[2025-10-10 19:20:04] 2025-10-10 23:20:03,858 [wrapper] apfmon messages muted
[2025-10-10 19:20:04] 2025-10-10 23:20:03,861 [wrapper] ==== wrapper stdout END ====
[2025-10-10 19:20:04] 2025-10-10 23:20:03,864 [wrapper] ==== wrapper stderr END ====
[2025-10-10 19:20:04]  *** Error codes and diagnostics ***
[2025-10-10 19:20:04]     "exeErrorCode": 0,
[2025-10-10 19:20:04]     "exeErrorDiag": "",
[2025-10-10 19:20:04]     "pilotErrorCode": 0,
[2025-10-10 19:20:04]     "pilotErrorDiag": "",
[2025-10-10 19:20:04]  *** Listing of results directory ***
[2025-10-10 19:20:04] total 426148
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 13:19 pilot3.tar.gz
[2025-10-10 19:20:04] -rwx------. 1 boincer umatlas     36292 Oct  9 13:38 runpilot2-wrapper.sh
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 13:38 queuedata.json
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas       100 Oct 10 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 19:20:04] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 00:03 run_atlas
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas       105 Oct 10 00:03 job.xml
[2025-10-10 19:20:04] -rw-r--r--. 2 boincer umatlas 221885021 Oct 10 00:03 EVNT.46676267._000971.pool.root.1
[2025-10-10 19:20:04] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 00:03 start_atlas.sh
[2025-10-10 19:20:04] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 00:03 shared
[2025-10-10 19:20:04] -rw-r--r--. 2 boincer umatlas    569678 Oct 10 00:03 input.tar.gz
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas         0 Oct 10 00:03 boinc_lockfile
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas      2548 Oct 10 00:03 pandaJob.out
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas    975454 Oct 10 00:04 agis_schedconf.cvmfs.json
[2025-10-10 19:20:04] drwx------. 5 boincer umatlas      4096 Oct 10 00:04 pilot3
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas      6524 Oct 10 19:11 init_data.xml
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas 194245898 Oct 10 19:17 HITS.46676269._023661.pool.root.1
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas       531 Oct 10 19:17 boinc_task_state.xml
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas      1055 Oct 10 19:18 memory_monitor_summary.json
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas   1560580 Oct 10 19:18 agis_ddmendpoints.agis.ALL.json
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas   1054523 Oct 10 19:18 log.46676269._023661.job.log.tgz.1
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas      7821 Oct 10 19:19 heartbeat.json
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas        95 Oct 10 19:19 pilot_heartbeat.json
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 19:20 boinc_mmap_file
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas        28 Oct 10 19:20 wrapper_checkpoint.txt
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas       823 Oct 10 19:20 pilotlog.txt
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas   7116929 Oct 10 19:20 log.46676269._023661.job.log.1
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas       357 Oct 10 19:20 output.list
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas       620 Oct 10 19:20 runtime_log
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas   8192000 Oct 10 19:20 result.tar.gz
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas      8704 Oct 10 19:20 runtime_log.err
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas       658 Oct 10 19:20 LIqMDmsl9Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmUSOMDm3xnKMm.diag
[2025-10-10 19:20:04] -rw-r--r--. 1 boincer umatlas     21289 Oct 10 19:20 stderr.txt
[2025-10-10 19:20:04] HITS file was successfully produced:
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas 194245898 Oct 10 19:17 shared/HITS.pool.root.1
[2025-10-10 19:20:04]  *** Contents of shared directory: ***
[2025-10-10 19:20:04] total 414964
[2025-10-10 19:20:04] -rw-r--r--. 2 boincer umatlas 221885021 Oct 10 00:03 ATLAS.root_0
[2025-10-10 19:20:04] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 00:03 start_atlas.sh
[2025-10-10 19:20:04] -rw-r--r--. 2 boincer umatlas    569678 Oct 10 00:03 input.tar.gz
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas 194245898 Oct 10 19:17 HITS.pool.root.1
[2025-10-10 19:20:04] -rw-------. 1 boincer umatlas   8192000 Oct 10 19:20 result.tar.gz
19:20:05 (2869786): run_atlas exited; CPU time 83303.755074
19:20:05 (2869786): called boinc_finish(0)

</stderr_txt>
]]>

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