Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-10 14:15:26 (13824): vboxwrapper version 26210
2025-10-10 14:15:26 (13824): BOINC client version: 8.0.2
2025-10-10 14:15:27 (13824): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-10-10 14:15:27 (13824): Successfully copied 'init_data.xml' to the shared directory.
2025-10-10 14:15:27 (13824): Create VM. (boinc_93f05e852d93a50d, slot#1)
2025-10-10 14:15:28 (13824): Setting Memory Size for VM. (4400MB)
2025-10-10 14:15:29 (13824): Setting CPU Count for VM. (4)
2025-10-10 14:15:29 (13824): Setting Chipset Options for VM.
2025-10-10 14:15:29 (13824): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-10 14:15:30 (13824): Setting Boot Options for VM.
2025-10-10 14:15:30 (13824): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-10 14:15:30 (13824): Enabling VM Network Access.
2025-10-10 14:15:31 (13824): Disabling USB Support for VM.
2025-10-10 14:15:31 (13824): Disabling COM Port Support for VM.
2025-10-10 14:15:31 (13824): Disabling LPT Port Support for VM.
2025-10-10 14:15:32 (13824): Disabling Audio Support for VM.
2025-10-10 14:15:32 (13824): Disabling Clipboard Support for VM.
2025-10-10 14:15:32 (13824): Disabling Drag and Drop Support for VM.
2025-10-10 14:15:32 (13824): Adding storage controller(s) to VM.
2025-10-10 14:15:33 (13824): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-10 14:15:34 (13824): Adding VirtualBox Guest Additions to VM.
2025-10-10 14:15:34 (13824): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-10 14:15:34 (13824): forwarding host port 59326 to guest port 80
2025-10-10 14:15:34 (13824): Enabling remote desktop for VM.
2025-10-10 14:15:35 (13824): Required extension pack not installed, remote desktop not enabled.
2025-10-10 14:15:35 (13824): Enabling shared directory for VM.
2025-10-10 14:15:36 (13824): Starting VM using VBoxManage interface. (boinc_93f05e852d93a50d, slot#1)
2025-10-10 14:15:41 (13824): Successfully started VM. (PID = '14096')
2025-10-10 14:15:41 (13824): Reporting VM Process ID to BOINC.
2025-10-10 14:15:41 (13824): Guest Log: BIOS: VirtualBox 6.1.34
2025-10-10 14:15:41 (13824): Guest Log: CPUID EDX: 0x178bfbff
2025-10-10 14:15:41 (13824): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-10 14:15:41 (13824): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-10 14:15:41 (13824): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-10 14:15:41 (13824): Detected: Web Application Enabled (http://localhost:59326)
2025-10-10 14:15:41 (13824): Preference change detected
2025-10-10 14:15:41 (13824): Setting CPU throttle for VM. (50%)
2025-10-10 14:15:43 (13824): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 14:15:43 (13824): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-10 14:15:44 (13824): Guest Log: BIOS: Booting from Hard Disk...
2025-10-10 14:16:12 (13824): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-10 14:16:12 (13824): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-10 14:16:12 (13824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-10 14:16:30 (13824): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-10 14:16:30 (13824): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-10 14:17:51 (13824): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-10 14:17:51 (13824): Guest Log: 00:00:00.000152 main     Log opened 2025-10-10T14:17:48.394391000Z
2025-10-10 14:17:51 (13824): Guest Log: 00:00:00.000247 main     OS Product: Linux
2025-10-10 14:17:51 (13824): Guest Log: 00:00:00.000284 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-10 14:17:51 (13824): Guest Log: 00:00:00.000314 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-10 14:17:51 (13824): Guest Log: 00:00:00.000343 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-10 14:17:51 (13824): Guest Log: 00:00:00.000344 main     Process ID: 1335
2025-10-10 14:17:51 (13824): Guest Log: 00:00:00.000345 main     Package type: LINUX_64BITS_GENERIC
2025-10-10 14:17:51 (13824): Guest Log: 00:00:00.002865 main     5.2.32 r132073 started. Verbose level = 0
2025-10-10 14:17:52 (13824): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-10 14:17:52 (13824): Guest Log: [INFO] Mounting shared directory
2025-10-10 14:17:52 (13824): Guest Log: [INFO] Checking for init_data.xml
2025-10-10 14:18:01 (13824): Guest Log: 00:00:10.008228 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 412 213 365 000ns (GuestNow=1 760 120 280 613 339 000 ns GuestLast=1 760 105 868 399 974 000 ns fSetTimeLastLoop=true )
2025-10-10 14:18:18 (13824): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-10 14:18:18 (13824): Guest Log: [INFO] Detected branch: prod
2025-10-10 14:18:18 (13824): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-10 14:18:18 (13824): Guest Log: Copying input files
2025-10-10 14:18:20 (13824): Guest Log: Copied input files into RunAtlas.
2025-10-10 14:18:20 (13824): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-10 14:18:20 (13824): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-10 14:18:20 (13824): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-10 14:18:20 (13824): Guest Log: Further information can be found at the LHC@home message board.
2025-10-10 14:18:32 (13824): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-10 14:18:32 (13824): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-10 14:18:32 (13824): Guest Log: 2.6.3.0 1632 0 30132 151558 4 1 3117639 4096000 0 65024 0 0 n/a 1 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-10 14:18:39 (13824): Guest Log: copied the webapp to /var/www
2025-10-10 14:18:40 (13824): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-10 14:18:40 (13824): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-10 14:18:40 (13824): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-10 14:18:40 (13824): Guest Log:  *** Starting ATLAS job. (PandaID=6837354705 taskID=46676269) ***
2025-10-10 14:33:47 (13824): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:34:07 (13824): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:34:17 (13824): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:34:37 (13824): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:34:47 (13824): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:35:07 (13824): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:35:17 (13824): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:35:37 (13824): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:35:47 (13824): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:36:07 (13824): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:36:17 (13824): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:36:37 (13824): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:36:47 (13824): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:36:48 (13824): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 15:57:56 (13824): Status Report: Elapsed Time: '6000.512526'
2025-10-10 15:57:56 (13824): Status Report: CPU Time: '12157.734375'
2025-10-10 17:07:23 (13824): Guest Log:  *** Job finished ***
2025-10-10 17:07:23 (13824): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:21,694 | INFO     | PID=6027 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:21,695 | INFO     | found 0 job(s) in 20 queues
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:21,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:21,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:21,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:21,695 | INFO     | [monitor] control thread has ended
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,416 | INFO     | all workflow threads have been joined
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,416 | INFO     | end of generic workflow (traces error code: 0)
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,417 | INFO     | traces error code: 0
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,418 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,554 [wrapper] ==== pilot stdout END ====
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,562 [wrapper] ==== wrapper stdout RESUME ====
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,570 [wrapper] pilotpid: 6027
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,578 [wrapper] Pilot exit status: 0
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,656 [wrapper] pandaids: 6837354705
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,709 [wrapper] cleanup supervisor_pilot  5574 6028
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,717 [wrapper] Test setup, not cleaning
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,721 [wrapper] apfmon messages muted
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,724 [wrapper] ==== wrapper stdout END ====
2025-10-10 17:07:23 (13824): Guest Log: 2025-10-10 21:05:23,727 [wrapper] ==== wrapper stderr END ====
2025-10-10 17:07:23 (13824): Guest Log:  *** Error codes and diagnostics ***
2025-10-10 17:07:23 (13824): Guest Log:     "exeErrorCode": 0,
2025-10-10 17:07:23 (13824): Guest Log:     "exeErrorDiag": "",
2025-10-10 17:07:23 (13824): Guest Log:     "pilotErrorCode": 0,
2025-10-10 17:07:23 (13824): Guest Log:     "pilotErrorDiag": "",
2025-10-10 17:07:23 (13824): Guest Log:  *** Listing of results directory ***
2025-10-10 17:07:23 (13824): Guest Log: total 203180
2025-10-10 17:07:23 (13824): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct  9 17:19 pilot3.tar.gz
2025-10-10 17:07:23 (13824): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  9 17:38 runpilot2-wrapper.sh
2025-10-10 17:07:23 (13824): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  9 17:38 queuedata.json
2025-10-10 17:07:23 (13824): Guest Log: -rwxr-xr-x. 1 atlas atlas      6193 Oct 10 18:18 init_data.xml
2025-10-10 17:07:23 (13824): Guest Log: -rwxr-xr-x. 1 atlas atlas    569678 Oct 10 18:18 input.tar.gz
2025-10-10 17:07:23 (13824): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 10 18:18 start_atlas.sh
2025-10-10 17:07:23 (13824): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 18:18 EVNT.46676267._000968.pool.root.1 -> /data/./ATLAS.root_0
2025-10-10 17:07:23 (13824): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 10 18:18 pandaJob.out
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas    975525 Oct 10 18:20 agis_schedconf.cvmfs.json
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 18:20 agis_ddmendpoints.agis.ALL.json
2025-10-10 17:07:23 (13824): Guest Log: drwx------. 5 atlas atlas      4096 Oct 10 18:20 pilot3
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas 201188941 Oct 10 21:03 HITS.46676269._023599.pool.root.1
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas      1030 Oct 10 21:04 memory_monitor_summary.json
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas    334518 Oct 10 21:04 log.46676269._023599.job.log.tgz.1
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas      7818 Oct 10 21:04 heartbeat.json
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas        95 Oct 10 21:05 pilot_heartbeat.json
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 10 21:05 pilotlog.txt
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas   1185108 Oct 10 21:05 log.46676269._023599.job.log.1
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 21:05 output.list
2025-10-10 17:07:23 (13824): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 21:05 runtime_log
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas   1536000 Oct 10 21:05 result.tar.gz
2025-10-10 17:07:23 (13824): Guest Log: -rw-r--r--. 1 atlas atlas      8675 Oct 10 21:05 runtime_log.err
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas       666 Oct 10 21:05 mRMMDmsl9Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmKSOMDmSBOaon.diag
2025-10-10 17:07:23 (13824): Guest Log: Looking for outputfile HITS.46676269._023599.pool.root.1
2025-10-10 17:07:23 (13824): Guest Log: HITS file was successfully produced
2025-10-10 17:07:23 (13824): Guest Log: -rw-------. 1 atlas atlas 201188941 Oct 10 21:03 /home/atlas/RunAtlas/HITS.46676269._023599.pool.root.1
2025-10-10 17:07:25 (13824): Guest Log: Successfully finished the ATLAS job!
2025-10-10 17:07:25 (13824): Guest Log: Copying the results back to the shared directory!
2025-10-10 17:07:25 (13824): Guest Log:  *** Contents of shared directory: ***
2025-10-10 17:07:25 (13824): Guest Log: total 415404
2025-10-10 17:07:25 (13824): Guest Log: -rwxrwxrwx. 1 root root 222047696 Oct 10 18:15 ATLAS.root_0
2025-10-10 17:07:25 (13824): Guest Log: -rwxrwxrwx. 1 root root 201188941 Oct 10  2025 HITS.pool.root.1
2025-10-10 17:07:25 (13824): Guest Log: -rwxrwxrwx. 1 root root      6193 Oct 10 18:15 init_data.xml
2025-10-10 17:07:25 (13824): Guest Log: -rwxrwxrwx. 1 root root    569678 Oct  9 23:11 input.tar.gz
2025-10-10 17:07:25 (13824): Guest Log: -rwxrwxrwx. 1 root root   1536000 Oct 10  2025 result.tar.gz
2025-10-10 17:07:25 (13824): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  9 23:11 start_atlas.sh
2025-10-10 17:07:25 (13824): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-10 17:07:25 (13824): VM Completion File Detected.
2025-10-10 17:07:25 (13824): Powering off VM.
2025-10-10 17:07:26 (13824): Successfully stopped VM.
2025-10-10 17:07:26 (13824): Deregistering VM. (boinc_93f05e852d93a50d, slot#1)
2025-10-10 17:07:26 (13824): Removing network bandwidth throttle group from VM.
2025-10-10 17:07:27 (13824): Removing VM from VirtualBox.
2025-10-10 17:07:32 (13824): called boinc_finish(0)

</stderr_txt>
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