Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:19 (721503): wrapper (7.7.26015): starting
00:04:19 (721503): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 00:04:19] Arguments: --nthreads 12
[2025-10-10 00:04:19] Threads: 12
[2025-10-10 00:04:19] Checking for CVMFS
[2025-10-10 00:04:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 00:04:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 00:04:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 00:04:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 00:04:26] 2.13.2.0 1140251 19564 256368 151533 1 94 33534497 40960001 17184 16776704 0 22960846 99.706 19425640 8730 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 00:04:26] CVMFS is ok
[2025-10-10 00:04:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 00:04:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 00:04:26] Further information can be found at the LHC@home message board.
[2025-10-10 00:04:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 00:04:26] Checking for apptainer binary...
[2025-10-10 00:04:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 00:04:26] Running /usr/bin/apptainer --version
[2025-10-10 00:04:27] apptainer version 1.4.3-1.el9
[2025-10-10 00:04:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 00:04:28] c7-10-13.aglt2.org
[2025-10-10 00:04:28] apptainer works
[2025-10-10 00:04:29] Set ATHENA_PROC_NUMBER=12
[2025-10-10 00:04:29] Set ATHENA_CORE_NUMBER=12
[2025-10-10 00:04:29] Starting ATLAS job with PandaID=6837344095
[2025-10-10 00:04:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 08:20:51]  *** The last 200 lines of the pilot log: ***
[2025-10-11 08:20:52] 2025-10-11 12:19:07,853 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 08:20:52] 2025-10-11 12:19:07,887 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 08:20:52] 2025-10-11 12:19:07,888 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 08:20:52] 2025-10-11 12:19:07,965 | INFO     | monitor loop #4547: job 0:6837344095 is in state 'finished'
[2025-10-11 08:20:52] 2025-10-11 12:19:07,966 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:20:52] 2025-10-11 12:19:08,990 | INFO     | fitting pss+swap vs Time
[2025-10-11 08:20:52] 2025-10-11 12:19:09,051 | INFO     | sum of square deviations: 2103441333135.1143
[2025-10-11 08:20:52] 2025-10-11 12:19:10,610 | INFO     | monitor loop #4548: job 0:6837344095 is in state 'finished'
[2025-10-11 08:20:52] 2025-10-11 12:19:10,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:20:52] 2025-10-11 12:19:13,290 | INFO     | monitor loop #4549: job 0:6837344095 is in state 'finished'
[2025-10-11 08:20:52] 2025-10-11 12:19:13,290 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:20:52] 2025-10-11 12:19:15,030 | INFO     | sum of deviations: 2913526002880.0063
[2025-10-11 08:20:52] 2025-10-11 12:19:15,030 | INFO     | mean x: 1760127254.5467513
[2025-10-11 08:20:52] 2025-10-11 12:19:15,030 | INFO     | mean y: 2125627.3671421027
[2025-10-11 08:20:52] 2025-10-11 12:19:15,031 | INFO     | -- intersect: -2435867980.4014983
[2025-10-11 08:20:52] 2025-10-11 12:19:15,031 | INFO     | intersect: -2435867980.4014983
[2025-10-11 08:20:52] 2025-10-11 12:19:15,119 | INFO     | chi2: 26.787634085539285
[2025-10-11 08:20:52] 2025-10-11 12:19:15,318 | INFO     | sum of square deviations: 2086818350550.4204
[2025-10-11 08:20:52] 2025-10-11 12:19:16,402 | INFO     | monitor loop #4550: job 0:6837344095 is in state 'finished'
[2025-10-11 08:20:52] 2025-10-11 12:19:16,402 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:20:52] 2025-10-11 12:19:19,282 | INFO     | monitor loop #4551: job 0:6837344095 is in state 'finished'
[2025-10-11 08:20:52] 2025-10-11 12:19:19,282 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:20:52] 2025-10-11 12:19:20,478 | INFO     | sum of deviations: 3423690772317.7593
[2025-10-11 08:20:52] 2025-10-11 12:19:20,479 | INFO     | mean x: 1760127102.0492585
[2025-10-11 08:20:52] 2025-10-11 12:19:20,479 | INFO     | mean y: 2130307.443326271
[2025-10-11 08:20:52] 2025-10-11 12:19:20,479 | INFO     | -- intersect: -2885581943.986219
[2025-10-11 08:20:52] 2025-10-11 12:19:20,479 | INFO     | intersect: -2885581943.986219
[2025-10-11 08:20:52] 2025-10-11 12:19:20,530 | INFO     | chi2: 23.19840891331225
[2025-10-11 08:20:52] 2025-10-11 12:19:20,530 | INFO     | current chi2=23.19840891331225 (change=13.398813649483884 %)
[2025-10-11 08:20:52] 2025-10-11 12:19:20,530 | INFO     | right removable region: 1887
[2025-10-11 08:20:52] 2025-10-11 12:19:20,559 | INFO     | sum of square deviations: 2086816447640.7012
[2025-10-11 08:20:52] 2025-10-11 12:19:22,058 | INFO     | monitor loop #4552: job 0:6837344095 is in state 'finished'
[2025-10-11 08:20:52] 2025-10-11 12:19:22,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:20:52] 2025-10-11 12:19:24,921 | INFO     | sum of deviations: 2392783184362.6055
[2025-10-11 08:20:52] 2025-10-11 12:19:24,922 | INFO     | mean x: 1760127407.052966
[2025-10-11 08:20:52] 2025-10-11 12:19:24,922 | INFO     | mean y: 2130403.5439618644
[2025-10-11 08:20:52] 2025-10-11 12:19:24,922 | INFO     | -- intersect: -2016064951.7272785
[2025-10-11 08:20:52] 2025-10-11 12:19:24,922 | INFO     | intersect: -2016064951.7272785
[2025-10-11 08:20:52] 2025-10-11 12:19:24,937 | INFO     | chi2: 23.074318882266283
[2025-10-11 08:20:52] 2025-10-11 12:19:24,937 | INFO     | current chi2=23.074318882266283 (change=13.862049897409765 %)
[2025-10-11 08:20:52] 2025-10-11 12:19:24,937 | INFO     | left removable region: 10
[2025-10-11 08:20:52] 2025-10-11 12:19:24,954 | INFO     | sum of square deviations: 2050553413808.5073
[2025-10-11 08:20:52] 2025-10-11 12:19:25,006 | INFO     | monitor loop #4553: job 0:6837344095 is in state 'finished'
[2025-10-11 08:20:52] 2025-10-11 12:19:25,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:20:52] 2025-10-11 12:19:27,176 | INFO     | sum of deviations: 2607160138841.01
[2025-10-11 08:20:52] 2025-10-11 12:19:27,177 | INFO     | mean x: 1760127376.559936
[2025-10-11 08:20:52] 2025-10-11 12:19:27,177 | INFO     | mean y: 2139721.7021843367
[2025-10-11 08:20:52] 2025-10-11 12:19:27,177 | INFO     | -- intersect: -2235760498.0861926
[2025-10-11 08:20:52] 2025-10-11 12:19:27,177 | INFO     | intersect: -2235760498.0861926
[2025-10-11 08:20:52] 2025-10-11 12:19:27,283 | INFO     | chi2: 16.688751017297093
[2025-10-11 08:20:52] 2025-10-11 12:19:27,283 | INFO     | -- intersect: -2235760498.0861926
[2025-10-11 08:20:52] 2025-10-11 12:19:27,284 | INFO     | current memory leak: 1.27 B/s (using 1877 data points, chi2=16.69)
[2025-10-11 08:20:52] 2025-10-11 12:19:27,352 | INFO     | could have reported an average CPU frequency of 3291 MHz (64 samples)
[2025-10-11 08:20:52] 2025-10-11 12:19:27,352 | INFO     | ..............................
[2025-10-11 08:20:52] 2025-10-11 12:19:27,352 | INFO     | . Timing measurements:
[2025-10-11 08:20:52] 2025-10-11 12:19:27,353 | INFO     | . get job = 1 s
[2025-10-11 08:20:52] 2025-10-11 12:19:27,353 | INFO     | . initial setup = 18 s
[2025-10-11 08:20:52] 2025-10-11 12:19:27,353 | INFO     | . payload setup = 72 s
[2025-10-11 08:20:52] 2025-10-11 12:19:27,353 | INFO     | . stage-in = 1 s
[2025-10-11 08:20:52] 2025-10-11 12:19:27,353 | INFO     | . payload execution = 115495 s
[2025-10-11 08:20:52] 2025-10-11 12:19:27,353 | INFO     | . stage-out = 29 s
[2025-10-11 08:20:52] 2025-10-11 12:19:27,354 | INFO     | . log creation = 10 s
[2025-10-11 08:20:52] 2025-10-11 12:19:27,354 | INFO     | ..............................
[2025-10-11 08:20:52] 2025-10-11 12:19:32,522 | INFO     | PID=737817 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 08:20:52] 2025-10-11 12:19:32,523 | INFO     | .. there are 27 such processes running
[2025-10-11 08:20:52] 2025-10-11 12:19:32,572 | INFO     | 
[2025-10-11 08:20:52] 2025-10-11 12:19:32,572 | INFO     | job summary report
[2025-10-11 08:20:52] 2025-10-11 12:19:32,572 | INFO     | --------------------------------------------------
[2025-10-11 08:20:52] 2025-10-11 12:19:32,573 | INFO     | PanDA job id: 6837344095
[2025-10-11 08:20:52] 2025-10-11 12:19:32,573 | INFO     | task id: 46676269
[2025-10-11 08:20:52] 2025-10-11 12:19:32,573 | INFO     | errors: (none)
[2025-10-11 08:20:52] 2025-10-11 12:19:32,573 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 08:20:52] 2025-10-11 12:19:32,573 | INFO     | pilot state: finished 
[2025-10-11 08:20:52] 2025-10-11 12:19:32,573 | INFO     | transexitcode: 0
[2025-10-11 08:20:52] 2025-10-11 12:19:32,573 | INFO     | exeerrorcode: 0
[2025-10-11 08:20:52] 2025-10-11 12:19:32,574 | INFO     | exeerrordiag: 
[2025-10-11 08:20:52] 2025-10-11 12:19:32,574 | INFO     | exitcode: 0
[2025-10-11 08:20:52] 2025-10-11 12:19:32,574 | INFO     | exitmsg: OK
[2025-10-11 08:20:52] 2025-10-11 12:19:32,574 | INFO     | cpuconsumptiontime: 109005 s
[2025-10-11 08:20:52] 2025-10-11 12:19:32,574 | INFO     | nevents: 400
[2025-10-11 08:20:52] 2025-10-11 12:19:32,574 | INFO     | neventsw: 0
[2025-10-11 08:20:52] 2025-10-11 12:19:32,575 | INFO     | pid: 757962
[2025-10-11 08:20:52] 2025-10-11 12:19:32,575 | INFO     | pgrp: 757962
[2025-10-11 08:20:52] 2025-10-11 12:19:32,575 | INFO     | corecount: 12
[2025-10-11 08:20:52] 2025-10-11 12:19:32,575 | INFO     | event service: False
[2025-10-11 08:20:52] 2025-10-11 12:19:32,575 | INFO     | sizes: {0: 2348027, 2: 2348628, 3: 2348712, 4: 2348740, 5: 2348768, 6: 2348995, 7: 2349151, 19: 2349179, 30: 2349207, 42: 2349235, 54: 2349291, 66: 2349599, 77: 23
[2025-10-11 08:20:52] 2025-10-11 12:19:32,575 | INFO     | --------------------------------------------------
[2025-10-11 08:20:52] 2025-10-11 12:19:32,576 | INFO     | 
[2025-10-11 08:20:52] 2025-10-11 12:19:32,585 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-11 08:20:52] 2025-10-11 12:19:33,051 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,052 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,052 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,052 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,053 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,053 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,053 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,053 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,053 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,053 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,054 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,054 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,054 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,054 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,054 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,059 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,060 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,060 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 08:20:52] 2025-10-11 12:19:33,060 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,061 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 08:20:52] 2025-10-11 12:19:33,061 | INFO     | job 6837344095 has completed (purged errors)
[2025-10-11 08:20:52] 2025-10-11 12:19:33,061 | INFO     | overall cleanup function is called
[2025-10-11 08:20:52] 2025-10-11 12:19:34,186 | INFO     | --- collectZombieJob: --- 10, [757962]
[2025-10-11 08:20:52] 2025-10-11 12:19:34,186 | INFO     | zombie collector waiting for pid 757962
[2025-10-11 08:20:52] 2025-10-11 12:19:34,186 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 08:20:52] 2025-10-11 12:19:34,187 | INFO     | collected zombie processes
[2025-10-11 08:20:52] 2025-10-11 12:19:34,187 | INFO     | will attempt to kill all subprocesses of pid=757962
[2025-10-11 08:20:52] 2025-10-11 12:19:39,368 | INFO     | process IDs to be killed: [757962] (in reverse order)
[2025-10-11 08:20:52] 2025-10-11 12:19:42,420 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 08:20:52] 2025-10-11 12:19:42,421 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 08:20:52] 2025-10-11 12:19:42,766 | INFO     | did not find any defunct processes belonging to 757962
[2025-10-11 08:20:52] 2025-10-11 12:19:42,842 | INFO     | did not find any defunct processes belonging to 757962
[2025-10-11 08:20:52] 2025-10-11 12:19:42,844 | INFO     | ready for new job
[2025-10-11 08:20:52] 2025-10-11 12:19:42,845 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 08:20:52] 2025-10-11 12:19:42,859 | INFO     | ***************************************
[2025-10-11 08:20:52] 2025-10-11 12:19:42,859 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 08:20:52] 2025-10-11 12:19:42,859 | INFO     | ***************************************
[2025-10-11 08:20:52] 2025-10-11 12:19:42,859 | INFO     | 
[2025-10-11 08:20:52] 2025-10-11 12:19:42,911 | INFO     | architecture information:
[2025-10-11 08:20:52] 2025-10-11 12:19:42,924 | INFO     | executing command: cat /etc/os-release
[2025-10-11 08:20:52] 2025-10-11 12:19:43,267 | INFO     | cat /etc/os-release:
[2025-10-11 08:20:52] NAME="CentOS Linux"
[2025-10-11 08:20:52] VERSION="7 (Core)"
[2025-10-11 08:20:52] ID="centos"
[2025-10-11 08:20:52] ID_LIKE="rhel fedora"
[2025-10-11 08:20:52] VERSION_ID="7"
[2025-10-11 08:20:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 08:20:52] ANSI_COLOR="0;31"
[2025-10-11 08:20:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 08:20:52] HOME_URL="https://www.centos.org/"
[2025-10-11 08:20:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 08:20:52] 
[2025-10-11 08:20:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 08:20:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 08:20:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 08:20:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 08:20:52] 
[2025-10-11 08:20:52] 2025-10-11 12:19:43,268 | INFO     | ***************************************
[2025-10-11 08:20:52] 2025-10-11 12:19:43,773 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-11 08:20:52] 2025-10-11 12:19:44,319 | INFO     | sufficient remaining disk space (83350257664 B)
[2025-10-11 08:20:52] 2025-10-11 12:19:44,320 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 08:20:52] 2025-10-11 12:19:44,320 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 08:20:52] 2025-10-11 12:19:44,320 | INFO     | update_server=False
[2025-10-11 08:20:52] 2025-10-11 12:19:44,320 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 08:20:52] 2025-10-11 12:19:44,367 | INFO     | all data control threads have been joined
[2025-10-11 08:20:52] 2025-10-11 12:19:44,514 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:20:52] 2025-10-11 12:19:44,515 | INFO     | aborting loop
[2025-10-11 08:20:52] 2025-10-11 12:19:44,974 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 08:20:52] 2025-10-11 12:19:45,328 | INFO     | [job] retrieve thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:45,373 | INFO     | [data] control thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:45,469 | INFO     | all payload control threads have been joined
[2025-10-11 08:20:52] 2025-10-11 12:19:45,479 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 08:20:52] 2025-10-11 12:19:45,490 | INFO     | all job control threads have been joined
[2025-10-11 08:20:52] 2025-10-11 12:19:45,496 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:45,521 | INFO     | [job] job monitor thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:45,537 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:45,898 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:20:52] 2025-10-11 12:19:46,172 | INFO     | [payload] failed_post thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:46,476 | INFO     | [payload] control thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:46,496 | INFO     | [job] control thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:46,507 | INFO     | [payload] validate_post thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:46,593 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:46,633 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:46,656 | INFO     | [job] validate thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:46,666 | INFO     | [data] copytool_in thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:46,916 | INFO     | [job] queue monitor thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:46,986 | INFO     | [data] copytool_out thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:19:49,531 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 08:20:52] 2025-10-11 12:20:17,156 | INFO     | PID=737817 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 08:20:52] 2025-10-11 12:20:17,157 | INFO     | .. there are 27 such processes running
[2025-10-11 08:20:52] 2025-10-11 12:20:17,157 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 08:20:52] 2025-10-11 12:20:17,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 08:20:52] 2025-10-11 12:20:17,158 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 08:20:52] 2025-10-11 12:20:41,448 | INFO     | [monitor] cgroup control has ended
[2025-10-11 08:20:52] 2025-10-11 12:20:42,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139775487371072)>', '<ExcThread(monitor, started 139774543263488)>']
[2025-10-11 08:20:52] 2025-10-11 12:20:43,419 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 08:20:52] 2025-10-11 12:20:43,419 | INFO     | [monitor] control thread has ended
[2025-10-11 08:20:52] 2025-10-11 12:20:47,860 | INFO     | all workflow threads have been joined
[2025-10-11 08:20:52] 2025-10-11 12:20:47,860 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 08:20:52] 2025-10-11 12:20:47,861 | INFO     | traces error code: 0
[2025-10-11 08:20:52] 2025-10-11 12:20:47,862 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 08:20:52] 2025-10-11 12:20:49,406 [wrapper] ==== pilot stdout END ====
[2025-10-11 08:20:52] 2025-10-11 12:20:49,427 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 08:20:52] 2025-10-11 12:20:49,434 [wrapper] pilotpid: 737817
[2025-10-11 08:20:52] 2025-10-11 12:20:49,439 [wrapper] Pilot exit status: 0
[2025-10-11 08:20:52] 2025-10-11 12:20:49,650 [wrapper] pandaids: 6837344095
[2025-10-11 08:20:52] 2025-10-11 12:20:50,066 [wrapper] cleanup supervisor_pilot 4161392 737818
[2025-10-11 08:20:52] 2025-10-11 12:20:50,074 [wrapper] Test setup, not cleaning
[2025-10-11 08:20:52] 2025-10-11 12:20:50,081 [wrapper] apfmon messages muted
[2025-10-11 08:20:52] 2025-10-11 12:20:50,086 [wrapper] ==== wrapper stdout END ====
[2025-10-11 08:20:52] 2025-10-11 12:20:50,091 [wrapper] ==== wrapper stderr END ====
[2025-10-11 08:20:52]  *** Error codes and diagnostics ***
[2025-10-11 08:20:52]     "exeErrorCode": 0,
[2025-10-11 08:20:52]     "exeErrorDiag": "",
[2025-10-11 08:20:52]     "pilotErrorCode": 0,
[2025-10-11 08:20:52]     "pilotErrorDiag": "",
[2025-10-11 08:20:52]  *** Listing of results directory ***
[2025-10-11 08:20:52] total 436852
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 09:21 pilot3.tar.gz
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 09:30 queuedata.json
[2025-10-11 08:20:52] -rwx------. 1 boincer umatlas     36292 Oct  9 09:31 runpilot2-wrapper.sh
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas       100 Oct 10 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 08:20:52] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 00:04 run_atlas
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas       105 Oct 10 00:04 job.xml
[2025-10-11 08:20:52] -rw-r--r--. 2 boincer umatlas 222841334 Oct 10 00:04 EVNT.46676267._000781.pool.root.1
[2025-10-11 08:20:52] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 00:04 start_atlas.sh
[2025-10-11 08:20:52] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 00:04 shared
[2025-10-11 08:20:52] -rw-r--r--. 2 boincer umatlas    569681 Oct 10 00:04 input.tar.gz
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas         0 Oct 10 00:04 boinc_lockfile
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas      2549 Oct 10 00:04 pandaJob.out
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas    975454 Oct 10 00:07 agis_schedconf.cvmfs.json
[2025-10-11 08:20:52] drwx------. 5 boincer umatlas      4096 Oct 10 00:07 pilot3
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas 195542146 Oct 11 08:04 HITS.46676269._018869.pool.root.1
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas       533 Oct 11 08:05 boinc_task_state.xml
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas      6900 Oct 11 08:13 init_data.xml
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas      1043 Oct 11 08:16 memory_monitor_summary.json
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas   1560580 Oct 11 08:16 agis_ddmendpoints.agis.ALL.json
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas   1563571 Oct 11 08:17 log.46676269._018869.job.log.tgz.1
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas      7816 Oct 11 08:19 heartbeat.json
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas        95 Oct 11 08:19 pilot_heartbeat.json
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 08:20 boinc_mmap_file
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas        29 Oct 11 08:20 wrapper_checkpoint.txt
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas      4823 Oct 11 08:20 pilotlog.txt
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas  10957454 Oct 11 08:20 log.46676269._018869.job.log.1
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas       357 Oct 11 08:20 output.list
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas       620 Oct 11 08:20 runtime_log
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas  12544000 Oct 11 08:20 result.tar.gz
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas       666 Oct 11 08:20 xWQKDmou5Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmh8ZNDmiJVXun.diag
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas      8707 Oct 11 08:20 runtime_log.err
[2025-10-11 08:20:52] -rw-r--r--. 1 boincer umatlas     21651 Oct 11 08:20 stderr.txt
[2025-10-11 08:20:52] HITS file was successfully produced:
[2025-10-11 08:20:52] -rw-------. 1 boincer umatlas 195542146 Oct 11 08:04 shared/HITS.pool.root.1
[2025-10-11 08:20:52]  *** Contents of shared directory: ***
[2025-10-11 08:20:53] total 421416
[2025-10-11 08:20:53] -rw-r--r--. 2 boincer umatlas 222841334 Oct 10 00:04 ATLAS.root_0
[2025-10-11 08:20:53] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 00:04 start_atlas.sh
[2025-10-11 08:20:53] -rw-r--r--. 2 boincer umatlas    569681 Oct 10 00:04 input.tar.gz
[2025-10-11 08:20:53] -rw-------. 1 boincer umatlas 195542146 Oct 11 08:04 HITS.pool.root.1
[2025-10-11 08:20:53] -rw-------. 1 boincer umatlas  12544000 Oct 11 08:20 result.tar.gz
08:21:16 (721503): run_atlas exited; CPU time 113285.677098
08:21:16 (721503): called boinc_finish(0)

</stderr_txt>
]]>

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