Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:35:01 (1906925): wrapper (7.7.26015): starting
12:35:01 (1906925): wrapper: running run_atlas (--nthreads 3)
[2025-10-10 12:35:01] Arguments: --nthreads 3
[2025-10-10 12:35:01] Threads: 3
[2025-10-10 12:35:01] Checking for CVMFS
[2025-10-10 12:35:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 12:35:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 12:35:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 12:35:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 12:35:01] 2.9.2.0 185998 5681 87964 151543 0 57 4527865 36864000 12 130560 0 4552061 99.991 192202 866 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-10 12:35:01] CVMFS is ok
[2025-10-10 12:35:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 12:35:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 12:35:01] Further information can be found at the LHC@home message board.
[2025-10-10 12:35:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 12:35:01] Checking for apptainer binary...
[2025-10-10 12:35:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 12:35:01] Running /usr/bin/apptainer --version
[2025-10-10 12:35:01] apptainer version 1.4.1-1.1
[2025-10-10 12:35:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 12:35:01] thA387a
[2025-10-10 12:35:01] apptainer works
[2025-10-10 12:35:01] Set ATHENA_PROC_NUMBER=3
[2025-10-10 12:35:01] Set ATHENA_CORE_NUMBER=3
[2025-10-10 12:35:01] Starting ATLAS job with PandaID=6837345906
[2025-10-10 12:35:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 13:56:18]  *** The last 200 lines of the pilot log: ***
[2025-10-10 13:56:18] 2025-10-10 11:55:29,448 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | job 6837345906 has completed (purged errors)
[2025-10-10 13:56:18] 2025-10-10 11:55:29,449 | INFO     | overall cleanup function is called
[2025-10-10 13:56:18] 2025-10-10 11:55:30,456 | INFO     | --- collectZombieJob: --- 10, [1917079]
[2025-10-10 13:56:18] 2025-10-10 11:55:30,456 | INFO     | zombie collector waiting for pid 1917079
[2025-10-10 13:56:18] 2025-10-10 11:55:30,456 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 13:56:18] 2025-10-10 11:55:30,456 | INFO     | collected zombie processes
[2025-10-10 13:56:18] 2025-10-10 11:55:30,456 | INFO     | will attempt to kill all subprocesses of pid=1917079
[2025-10-10 13:56:18] 2025-10-10 11:55:30,498 | INFO     | process IDs to be killed: [1917079] (in reverse order)
[2025-10-10 13:56:18] 2025-10-10 11:55:30,521 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 13:56:18] 2025-10-10 11:55:30,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 13:56:18] 2025-10-10 11:55:30,522 | INFO     | did not find any defunct processes belonging to 1917079
[2025-10-10 13:56:18] 2025-10-10 11:55:30,523 | INFO     | did not find any defunct processes belonging to 1917079
[2025-10-10 13:56:18] 2025-10-10 11:55:30,524 | INFO     | ready for new job
[2025-10-10 13:56:18] 2025-10-10 11:55:30,524 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 13:56:18] 2025-10-10 11:55:30,524 | INFO     | ***************************************
[2025-10-10 13:56:18] 2025-10-10 11:55:30,524 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 13:56:18] 2025-10-10 11:55:30,524 | INFO     | ***************************************
[2025-10-10 13:56:18] 2025-10-10 11:55:30,524 | INFO     | 
[2025-10-10 13:56:18] 2025-10-10 11:55:30,525 | INFO     | architecture information:
[2025-10-10 13:56:18] 2025-10-10 11:55:30,525 | INFO     | executing command: cat /etc/os-release
[2025-10-10 13:56:18] 2025-10-10 11:55:30,533 | INFO     | cat /etc/os-release:
[2025-10-10 13:56:18] NAME="CentOS Linux"
[2025-10-10 13:56:18] VERSION="7 (Core)"
[2025-10-10 13:56:18] ID="centos"
[2025-10-10 13:56:18] ID_LIKE="rhel fedora"
[2025-10-10 13:56:18] VERSION_ID="7"
[2025-10-10 13:56:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 13:56:18] ANSI_COLOR="0;31"
[2025-10-10 13:56:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 13:56:18] HOME_URL="https://www.centos.org/"
[2025-10-10 13:56:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 13:56:18] 
[2025-10-10 13:56:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 13:56:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 13:56:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 13:56:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 13:56:18] 
[2025-10-10 13:56:18] 2025-10-10 11:55:30,533 | INFO     | ***************************************
[2025-10-10 13:56:18] 2025-10-10 11:55:31,037 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-10 13:56:18] 2025-10-10 11:55:31,049 | INFO     | sufficient remaining disk space (254940282880 B)
[2025-10-10 13:56:18] 2025-10-10 11:55:31,049 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 13:56:18] 2025-10-10 11:55:31,049 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 13:56:18] 2025-10-10 11:55:31,049 | INFO     | update_server=False
[2025-10-10 13:56:18] 2025-10-10 11:55:31,049 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 13:56:18] 2025-10-10 11:55:31,049 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 13:56:18] 2025-10-10 11:55:31,049 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-10 13:56:18] 2025-10-10 11:55:31,050 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 13:56:18] 2025-10-10 11:55:31,050 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 13:56:18] 2025-10-10 11:55:31,050 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 13:56:18] 2025-10-10 11:55:31,276 | INFO     | all payload control threads have been joined
[2025-10-10 13:56:18] 2025-10-10 11:55:31,390 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 13:56:18] 2025-10-10 11:55:31,390 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 13:56:18] 2025-10-10 11:55:31,390 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 13:56:18] 2025-10-10 11:55:31,391 | INFO     | will abort loop
[2025-10-10 13:56:18] 2025-10-10 11:55:31,981 | INFO     | all job control threads have been joined
[2025-10-10 13:56:18] 2025-10-10 11:55:31,986 | INFO     | all data control threads have been joined
[2025-10-10 13:56:18] 2025-10-10 11:55:32,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 13:56:18] 2025-10-10 11:55:32,054 | INFO     | [job] retrieve thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:32,055 | INFO     | [job] queue monitor thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:32,062 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:32,064 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:32,166 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:32,282 | INFO     | [payload] control thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:32,396 | INFO     | [job] job monitor thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:32,629 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:32,899 | INFO     | [payload] validate_post thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:32,942 | INFO     | [data] copytool_in thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:32,987 | INFO     | [job] control thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:32,992 | INFO     | [data] control thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:33,394 | INFO     | [payload] failed_post thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:33,498 | INFO     | [job] validate thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:33,708 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 13:56:18] 2025-10-10 11:55:34,017 | INFO     | [data] copytool_out thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:55:37,714 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 13:56:18] 2025-10-10 11:56:12,767 | INFO     | [monitor] cgroup control has ended
[2025-10-10 13:56:18] 2025-10-10 11:56:12,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139889023186752)>', '<ExcThread(monitor, started 139888536045312)>']
[2025-10-10 13:56:18] 2025-10-10 11:56:13,264 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 13:56:18] 2025-10-10 11:56:13,265 | INFO     | [monitor] control thread has ended
[2025-10-10 13:56:18] 2025-10-10 11:56:17,992 | INFO     | all workflow threads have been joined
[2025-10-10 13:56:18] 2025-10-10 11:56:17,993 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 13:56:18] 2025-10-10 11:56:17,993 | INFO     | traces error code: 0
[2025-10-10 13:56:18] 2025-10-10 11:56:17,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 13:56:18] 2025-10-10 11:56:18,043 [wrapper] ==== pilot stdout END ====
[2025-10-10 13:56:18] 2025-10-10 11:56:18,046 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 13:56:18] 2025-10-10 11:56:18,048 [wrapper] pilotpid: 1910641
[2025-10-10 13:56:18] 2025-10-10 11:56:18,050 [wrapper] Pilot exit status: 0
[2025-10-10 13:56:18] 2025-10-10 11:56:18,057 [wrapper] pandaids: 6837345906
[2025-10-10 13:56:18] 2025-10-10 11:56:18,073 [wrapper] cleanup supervisor_pilot 1929081 1910642
[2025-10-10 13:56:18] 2025-10-10 11:56:18,075 [wrapper] Test setup, not cleaning
[2025-10-10 13:56:18] 2025-10-10 11:56:18,077 [wrapper] apfmon messages muted
[2025-10-10 13:56:18] 2025-10-10 11:56:18,080 [wrapper] ==== wrapper stdout END ====
[2025-10-10 13:56:18] 2025-10-10 11:56:18,082 [wrapper] ==== wrapper stderr END ====
[2025-10-10 13:56:18]  *** Error codes and diagnostics ***
[2025-10-10 13:56:18]     "exeErrorCode": 0,
[2025-10-10 13:56:18]     "exeErrorDiag": "",
[2025-10-10 13:56:18]     "pilotErrorCode": 0,
[2025-10-10 13:56:18]     "pilotErrorDiag": "",
[2025-10-10 13:56:18]  *** Listing of results directory ***
[2025-10-10 13:56:18] total 412464
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc    557409 Oct  9 16:08 pilot3.tar.gz
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc      5112 Oct  9 16:21 queuedata.json
[2025-10-10 13:56:18] -rwx------ 1 boinc boinc     36292 Oct  9 16:21 runpilot2-wrapper.sh
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc       100 Oct 10 12:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 13:56:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 12:35 run_atlas
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc       105 Oct 10 12:35 job.xml
[2025-10-10 13:56:18] -rw-r--r-- 2 boinc boinc 221525636 Oct 10 12:35 EVNT.46676267._000829.pool.root.1
[2025-10-10 13:56:18] -rw-r--r-- 2 boinc boinc    569680 Oct 10 12:35 input.tar.gz
[2025-10-10 13:56:18] -rw-r--r-- 2 boinc boinc     15120 Oct 10 12:35 start_atlas.sh
[2025-10-10 13:56:18] drwxrwx--x 2 boinc boinc      4096 Oct 10 12:35 shared
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc         0 Oct 10 12:35 boinc_setup_complete
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc      6438 Oct 10 12:35 init_data.xml
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc         0 Oct 10 12:35 boinc_lockfile
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc      2549 Oct 10 12:35 pandaJob.out
[2025-10-10 13:56:18] -rw------- 1 boinc boinc    975528 Oct 10 12:35 agis_schedconf.cvmfs.json
[2025-10-10 13:56:18] -rw------- 1 boinc boinc   1560580 Oct 10 12:35 agis_ddmendpoints.agis.ALL.json
[2025-10-10 13:56:18] drwx------ 5 boinc boinc      4096 Oct 10 12:35 pilot3
[2025-10-10 13:56:18] -rw------- 1 boinc boinc 195006993 Oct 10 13:55 HITS.46676269._019942.pool.root.1
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc       529 Oct 10 13:55 boinc_task_state.xml
[2025-10-10 13:56:18] -rw------- 1 boinc boinc      1022 Oct 10 13:55 memory_monitor_summary.json
[2025-10-10 13:56:18] -rw------- 1 boinc boinc    255329 Oct 10 13:55 log.46676269._019942.job.log.tgz.1
[2025-10-10 13:56:18] -rw------- 1 boinc boinc      7762 Oct 10 13:55 heartbeat.json
[2025-10-10 13:56:18] -rw------- 1 boinc boinc        95 Oct 10 13:55 pilot_heartbeat.json
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc        27 Oct 10 13:56 wrapper_checkpoint.txt
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc      8192 Oct 10 13:56 boinc_mmap_file
[2025-10-10 13:56:18] -rw------- 1 boinc boinc      4742 Oct 10 13:56 pilotlog.txt
[2025-10-10 13:56:18] -rw------- 1 boinc boinc    710656 Oct 10 13:56 log.46676269._019942.job.log.1
[2025-10-10 13:56:18] -rw------- 1 boinc boinc       357 Oct 10 13:56 output.list
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc       620 Oct 10 13:56 runtime_log
[2025-10-10 13:56:18] -rw------- 1 boinc boinc    983040 Oct 10 13:56 result.tar.gz
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc      8782 Oct 10 13:56 runtime_log.err
[2025-10-10 13:56:18] -rw------- 1 boinc boinc       659 Oct 10 13:56 Kd0LDmvh6Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmw4NMDmfB0EGm.diag
[2025-10-10 13:56:18] -rw-r--r-- 1 boinc boinc     12982 Oct 10 13:56 stderr.txt
[2025-10-10 13:56:18] HITS file was successfully produced:
[2025-10-10 13:56:18] -rw------- 1 boinc boinc 195006993 Oct 10 13:55 shared/HITS.pool.root.1
[2025-10-10 13:56:18]  *** Contents of shared directory: ***
[2025-10-10 13:56:18] total 408320
[2025-10-10 13:56:18] -rw-r--r-- 2 boinc boinc 221525636 Oct 10 12:35 ATLAS.root_0
[2025-10-10 13:56:18] -rw-r--r-- 2 boinc boinc    569680 Oct 10 12:35 input.tar.gz
[2025-10-10 13:56:18] -rw-r--r-- 2 boinc boinc     15120 Oct 10 12:35 start_atlas.sh
[2025-10-10 13:56:18] -rw------- 1 boinc boinc 195006993 Oct 10 13:55 HITS.pool.root.1
[2025-10-10 13:56:18] -rw------- 1 boinc boinc    983040 Oct 10 13:56 result.tar.gz
13:56:20 (1906925): run_atlas exited; CPU time 13840.476140
13:56:20 (1906925): called boinc_finish(0)

</stderr_txt>
]]>

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