Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
23:03:06 (1930091): wrapper (7.7.26015): starting
23:03:06 (1930091): wrapper: running run_atlas (--nthreads 12)
[2025-10-09 23:03:06] Arguments: --nthreads 12
[2025-10-09 23:03:06] Threads: 12
[2025-10-09 23:03:06] Checking for CVMFS
[2025-10-09 23:03:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 23:03:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 23:03:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 23:03:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 23:03:06] 2.13.2.0 3843265 1018 63928 151533 0 188 5511401 6144000 3668 130560 0 6012330 99.999 33414 159 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-09 23:03:06] CVMFS is ok
[2025-10-09 23:03:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 23:03:06] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-09 23:03:06] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-09 23:03:06] Further information can be found at the LHC@home message board.
[2025-10-09 23:03:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 23:03:06] Checking for apptainer binary...
[2025-10-09 23:03:06] apptainer is not installed, using version from CVMFS
[2025-10-09 23:03:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 23:03:07] XeonFire
[2025-10-09 23:03:07] apptainer works
[2025-10-09 23:03:07] Set ATHENA_PROC_NUMBER=12
[2025-10-09 23:03:07] Set ATHENA_CORE_NUMBER=12
[2025-10-09 23:03:07] Starting ATLAS job with PandaID=6837345779
[2025-10-09 23:03:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 23:57:44]  *** The last 200 lines of the pilot log: ***
[2025-10-09 23:57:44] 2025-10-10 04:56:37,712 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/4/PanDA_Pilot-6837345779/log.46676269._019853.job.log.tgz.1 /var/lib/boinc-client/slots/4/log.466762
[2025-10-09 23:57:44] 2025-10-10 04:56:37,735 | INFO     | adding to output.list: log.46676269._019853.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d3/6b/log.46676269._019853.job.log.tg
[2025-10-09 23:57:44] 2025-10-10 04:56:37,735 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 23:57:44] 2025-10-10 04:56:37,736 | INFO     | summary of transferred files:
[2025-10-09 23:57:44] 2025-10-10 04:56:37,736 | INFO     |  -- lfn=log.46676269._019853.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 23:57:44] 2025-10-10 04:56:37,736 | INFO     | stage-out finished correctly
[2025-10-09 23:57:44] 2025-10-10 04:56:37,995 | INFO     | time since job start (3183s) is within the limit (172800.0s)
[2025-10-09 23:57:44] 2025-10-10 04:56:39,685 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 23:57:44] 2025-10-10 04:56:40,001 | INFO     | time since job start (3186s) is within the limit (172800.0s)
[2025-10-09 23:57:44] 2025-10-10 04:56:40,915 | INFO     | job 6837345779 has state=finished
[2025-10-09 23:57:44] 2025-10-10 04:56:40,915 | INFO     | preparing for final server update for job 6837345779 in state='finished'
[2025-10-09 23:57:44] 2025-10-10 04:56:40,916 | INFO     | this job has now completed (state=finished)
[2025-10-09 23:57:44] 2025-10-10 04:56:40,916 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 23:57:44] 2025-10-10 04:56:40,916 | INFO     | log transfer has been attempted: DONE
[2025-10-09 23:57:44] 2025-10-10 04:56:40,917 | INFO     | job 6837345779 has finished - writing final server update
[2025-10-09 23:57:44] 2025-10-10 04:56:40,917 | INFO     | total number of processed events: 400 (read)
[2025-10-09 23:57:44] 2025-10-10 04:56:40,918 | INFO     | executing command: lscpu
[2025-10-09 23:57:44] 2025-10-10 04:56:40,991 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 23:57:44] 2025-10-10 04:56:42,006 | INFO     | time since job start (3188s) is within the limit (172800.0s)
[2025-10-09 23:57:44] 2025-10-10 04:56:43,200 | WARNING  | process 1941185 can no longer be monitored (due to stat problems) - aborting
[2025-10-09 23:57:44] 2025-10-10 04:56:43,201 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6837345779/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 23:57:44] 2025-10-10 04:56:43,613 | INFO     | number of running child processes to parent process 1941185: 1
[2025-10-09 23:57:44] 2025-10-10 04:56:43,613 | INFO     | maximum number of monitored processes: 6
[2025-10-09 23:57:44] 2025-10-10 04:56:44,012 | INFO     | time since job start (3190s) is within the limit (172800.0s)
[2025-10-09 23:57:44] 2025-10-10 04:56:46,018 | INFO     | time since job start (3192s) is within the limit (172800.0s)
[2025-10-09 23:57:44] 2025-10-10 04:56:46,116 | INFO     | monitor loop #235: job 0:6837345779 is in state 'finished'
[2025-10-09 23:57:44] 2025-10-10 04:56:46,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 23:57:44] 2025-10-10 04:56:47,553 | INFO     | PID=1934150 has CPU usage=15.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-09 23:57:44] 2025-10-10 04:56:47,553 | INFO     | .. there are 5 such processes running
[2025-10-09 23:57:44] 2025-10-10 04:56:48,553 | INFO     | time since job start (3194s) is within the limit (172800.0s)
[2025-10-09 23:57:44] 2025-10-10 04:56:48,620 | INFO     | monitor loop #236: job 0:6837345779 is in state 'finished'
[2025-10-09 23:57:44] 2025-10-10 04:56:48,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 23:57:44] 2025-10-10 04:56:50,559 | INFO     | time since job start (3196s) is within the limit (172800.0s)
[2025-10-09 23:57:44] 2025-10-10 04:56:51,123 | INFO     | monitor loop #237: job 0:6837345779 is in state 'finished'
[2025-10-09 23:57:44] 2025-10-10 04:56:51,124 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 23:57:44] 2025-10-10 04:56:51,907 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-09 23:57:44] 2025-10-10 04:56:51,921 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2294.13890909091
[2025-10-09 23:57:44] 2025-10-10 04:56:51,938 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6837345779/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 23:57:44] 2025-10-10 04:56:51,938 | INFO     | extracted standard info from prmon json
[2025-10-09 23:57:44] 2025-10-10 04:56:51,939 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 23:57:44] 2025-10-10 04:56:51,939 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 23:57:44] 2025-10-10 04:56:51,939 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 23:57:44] 2025-10-10 04:56:51,939 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 23:57:44] 2025-10-10 04:56:51,941 | INFO     | fitting pss+swap vs Time
[2025-10-09 23:57:44] 2025-10-10 04:56:51,941 | INFO     | sum of square deviations: 28242390.0
[2025-10-09 23:57:44] 2025-10-10 04:56:51,941 | INFO     | sum of deviations: 1168793611.0
[2025-10-09 23:57:44] 2025-10-10 04:56:51,942 | INFO     | mean x: 1760070689.0
[2025-10-09 23:57:44] 2025-10-10 04:56:51,942 | INFO     | mean y: 2651147.822222222
[2025-10-09 23:57:44] 2025-10-10 04:56:51,942 | INFO     | -- intersect: -72836771302.3163
[2025-10-09 23:57:44] 2025-10-10 04:56:51,942 | INFO     | intersect: -72836771302.3163
[2025-10-09 23:57:44] 2025-10-10 04:56:51,942 | INFO     | chi2: 0.0599879441780198
[2025-10-09 23:57:44] 2025-10-10 04:56:51,942 | INFO     | -- intersect: -72836771302.3163
[2025-10-09 23:57:44] 2025-10-10 04:56:51,942 | INFO     | current memory leak: 41.38 B/s (using 45 data points, chi2=0.06)
[2025-10-09 23:57:44] 2025-10-10 04:56:51,943 | INFO     | could have reported an average CPU frequency of 2364 MHz (5 samples)
[2025-10-09 23:57:44] 2025-10-10 04:56:51,943 | INFO     | ..............................
[2025-10-09 23:57:44] 2025-10-10 04:56:51,943 | INFO     | . Timing measurements:
[2025-10-09 23:57:44] 2025-10-10 04:56:51,943 | INFO     | . get job = 0 s
[2025-10-09 23:57:44] 2025-10-10 04:56:51,943 | INFO     | . initial setup = 15 s
[2025-10-09 23:57:44] 2025-10-10 04:56:51,943 | INFO     | . payload setup = 6 s
[2025-10-09 23:57:44] 2025-10-10 04:56:51,943 | INFO     | . stage-in = 0 s
[2025-10-09 23:57:44] 2025-10-10 04:56:51,944 | INFO     | . payload execution = 3156 s
[2025-10-09 23:57:44] 2025-10-10 04:56:51,944 | INFO     | . stage-out = 0 s
[2025-10-09 23:57:44] 2025-10-10 04:56:51,944 | INFO     | . log creation = 0 s
[2025-10-09 23:57:44] 2025-10-10 04:56:51,944 | INFO     | ..............................
[2025-10-09 23:57:44] 2025-10-10 04:56:52,052 | INFO     | 
[2025-10-09 23:57:44] 2025-10-10 04:56:52,052 | INFO     | job summary report
[2025-10-09 23:57:44] 2025-10-10 04:56:52,052 | INFO     | --------------------------------------------------
[2025-10-09 23:57:44] 2025-10-10 04:56:52,053 | INFO     | PanDA job id: 6837345779
[2025-10-09 23:57:44] 2025-10-10 04:56:52,053 | INFO     | task id: 46676269
[2025-10-09 23:57:44] 2025-10-10 04:56:52,053 | INFO     | errors: (none)
[2025-10-09 23:57:44] 2025-10-10 04:56:52,053 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 23:57:44] 2025-10-10 04:56:52,053 | INFO     | pilot state: finished 
[2025-10-09 23:57:44] 2025-10-10 04:56:52,053 | INFO     | transexitcode: 0
[2025-10-09 23:57:44] 2025-10-10 04:56:52,053 | INFO     | exeerrorcode: 0
[2025-10-09 23:57:44] 2025-10-10 04:56:52,053 | INFO     | exeerrordiag: 
[2025-10-09 23:57:44] 2025-10-10 04:56:52,053 | INFO     | exitcode: 0
[2025-10-09 23:57:44] 2025-10-10 04:56:52,053 | INFO     | exitmsg: OK
[2025-10-09 23:57:44] 2025-10-10 04:56:52,054 | INFO     | cpuconsumptiontime: 31951 s
[2025-10-09 23:57:44] 2025-10-10 04:56:52,054 | INFO     | nevents: 400
[2025-10-09 23:57:44] 2025-10-10 04:56:52,054 | INFO     | neventsw: 0
[2025-10-09 23:57:44] 2025-10-10 04:56:52,054 | INFO     | pid: 1941185
[2025-10-09 23:57:44] 2025-10-10 04:56:52,054 | INFO     | pgrp: 1941185
[2025-10-09 23:57:44] 2025-10-10 04:56:52,054 | INFO     | corecount: 12
[2025-10-09 23:57:44] 2025-10-10 04:56:52,054 | INFO     | event service: False
[2025-10-09 23:57:44] 2025-10-10 04:56:52,054 | INFO     | sizes: {0: 2348691, 1: 2348890, 6: 2349152, 12: 2349180, 3167: 2374491, 3168: 2383503, 3170: 2383687, 3182: 2383913}
[2025-10-09 23:57:44] 2025-10-10 04:56:52,054 | INFO     | --------------------------------------------------
[2025-10-09 23:57:44] 2025-10-10 04:56:52,054 | INFO     | 
[2025-10-09 23:57:44] 2025-10-10 04:56:52,055 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2025-10-09 23:57:44] 2025-10-10 04:56:52,078 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,079 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,079 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,079 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,079 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,079 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,079 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,079 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,079 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,080 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,080 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,080 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,080 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,080 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,080 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,080 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 23:57:44] 2025-10-10 04:56:52,080 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,081 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 23:57:44] 2025-10-10 04:56:52,081 | INFO     | job 6837345779 has completed (purged errors)
[2025-10-09 23:57:44] 2025-10-10 04:56:52,081 | INFO     | overall cleanup function is called
[2025-10-09 23:57:44] 2025-10-10 04:56:53,090 | INFO     | --- collectZombieJob: --- 10, [1941185]
[2025-10-09 23:57:44] 2025-10-10 04:56:53,090 | INFO     | zombie collector waiting for pid 1941185
[2025-10-09 23:57:44] 2025-10-10 04:56:53,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 23:57:44] 2025-10-10 04:56:53,090 | INFO     | collected zombie processes
[2025-10-09 23:57:44] 2025-10-10 04:56:53,091 | INFO     | will attempt to kill all subprocesses of pid=1941185
[2025-10-09 23:57:44] 2025-10-10 04:56:53,512 | INFO     | process IDs to be killed: [1941185] (in reverse order)
[2025-10-09 23:57:44] 2025-10-10 04:56:53,645 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 23:57:44] 2025-10-10 04:56:53,645 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 23:57:44] 2025-10-10 04:56:53,656 | INFO     | did not find any defunct processes belonging to 1941185
[2025-10-09 23:57:44] 2025-10-10 04:56:53,664 | INFO     | did not find any defunct processes belonging to 1941185
[2025-10-09 23:57:44] 2025-10-10 04:56:53,664 | INFO     | ready for new job
[2025-10-09 23:57:44] 2025-10-10 04:56:53,664 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 23:57:44] 2025-10-10 04:56:53,666 | INFO     | ***************************************
[2025-10-09 23:57:44] 2025-10-10 04:56:53,666 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 23:57:44] 2025-10-10 04:56:53,666 | INFO     | ***************************************
[2025-10-09 23:57:44] 2025-10-10 04:56:53,666 | INFO     | 
[2025-10-09 23:57:44] 2025-10-10 04:56:53,671 | INFO     | architecture information:
[2025-10-09 23:57:44] 2025-10-10 04:56:53,671 | INFO     | executing command: cat /etc/os-release
[2025-10-09 23:57:44] 2025-10-10 04:56:53,686 | INFO     | cat /etc/os-release:
[2025-10-09 23:57:44] NAME="CentOS Linux"
[2025-10-09 23:57:44] VERSION="7 (Core)"
[2025-10-09 23:57:44] ID="centos"
[2025-10-09 23:57:44] ID_LIKE="rhel fedora"
[2025-10-09 23:57:44] VERSION_ID="7"
[2025-10-09 23:57:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 23:57:44] ANSI_COLOR="0;31"
[2025-10-09 23:57:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 23:57:44] HOME_URL="https://www.centos.org/"
[2025-10-09 23:57:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 23:57:44] 
[2025-10-09 23:57:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 23:57:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 23:57:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 23:57:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 23:57:44] 
[2025-10-09 23:57:44] 2025-10-10 04:56:53,686 | INFO     | ***************************************
[2025-10-09 23:57:44] 2025-10-10 04:56:54,189 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2025-10-09 23:57:44] 2025-10-10 04:56:54,205 | INFO     | sufficient remaining disk space (1817292308480 B)
[2025-10-09 23:57:44] 2025-10-10 04:56:54,206 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 23:57:44] 2025-10-10 04:56:54,206 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 23:57:44] 2025-10-10 04:56:54,206 | INFO     | update_server=False
[2025-10-09 23:57:44] 2025-10-10 04:56:54,206 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 23:57:44] 2025-10-10 04:56:54,207 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 23:57:44] 2025-10-10 04:56:54,632 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 23:57:44] 2025-10-10 04:56:54,632 | INFO     | aborting loop
[2025-10-09 23:57:44] 2025-10-10 04:56:54,671 | INFO     | all payload control threads have been joined
[2025-10-09 23:57:44] 2025-10-10 04:56:54,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 23:57:44] 2025-10-10 04:56:55,173 | INFO     | all data control threads have been joined
[2025-10-09 23:57:44] 2025-10-10 04:56:55,212 | INFO     | [job] retrieve thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:55,222 | INFO     | [data] copytool_in thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:55,498 | INFO     | [payload] validate_post thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:55,638 | INFO     | [job] job monitor thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:55,676 | INFO     | [payload] control thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:55,821 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:55,826 | INFO     | [job] validate thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:55,885 | INFO     | all job control threads have been joined
[2025-10-09 23:57:44] 2025-10-10 04:56:55,927 | INFO     | [payload] failed_post thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:56,036 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:56,178 | INFO     | [data] control thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:56,212 | INFO     | [data] copytool_out thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:56,370 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:56,890 | INFO     | [job] control thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:57,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 23:57:44] 2025-10-10 04:56:58,067 | INFO     | [job] queue monitor thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:56:58,807 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:57:04,620 | INFO     | job.realtimelogging is not enabled
[2025-10-09 23:57:44] 2025-10-10 04:57:05,621 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 23:57:44] 2025-10-10 04:57:24,173 | INFO     | PID=1934150 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 23:57:44] 2025-10-10 04:57:24,174 | INFO     | .. there are 5 such processes running
[2025-10-09 23:57:44] 2025-10-10 04:57:24,174 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 23:57:44] 2025-10-10 04:57:24,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 23:57:44] 2025-10-10 04:57:24,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 23:57:44] 2025-10-10 04:57:38,485 | INFO     | [monitor] cgroup control has ended
[2025-10-09 23:57:44] 2025-10-10 04:57:39,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140715290453824)>', '<ExcThread(monitor, started 140714402903808)>']
[2025-10-09 23:57:44] 2025-10-10 04:57:40,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 23:57:44] 2025-10-10 04:57:40,249 | INFO     | [monitor] control thread has ended
[2025-10-09 23:57:44] 2025-10-10 04:57:44,621 | INFO     | all workflow threads have been joined
[2025-10-09 23:57:44] 2025-10-10 04:57:44,621 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 23:57:44] 2025-10-10 04:57:44,621 | INFO     | traces error code: 0
[2025-10-09 23:57:44] 2025-10-10 04:57:44,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 23:57:44] 2025-10-10 04:57:44,734 [wrapper] ==== pilot stdout END ====
[2025-10-09 23:57:44] 2025-10-10 04:57:44,738 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 23:57:44] 2025-10-10 04:57:44,741 [wrapper] pilotpid: 1934150
[2025-10-09 23:57:44] 2025-10-10 04:57:44,743 [wrapper] Pilot exit status: 0
[2025-10-09 23:57:44] 2025-10-10 04:57:44,754 [wrapper] pandaids: 6837345779
[2025-10-09 23:57:44] 2025-10-10 04:57:44,828 [wrapper] cleanup supervisor_pilot 2046128 1934151
[2025-10-09 23:57:44] 2025-10-10 04:57:44,832 [wrapper] Test setup, not cleaning
[2025-10-09 23:57:44] 2025-10-10 04:57:44,835 [wrapper] apfmon messages muted
[2025-10-09 23:57:44] 2025-10-10 04:57:44,838 [wrapper] ==== wrapper stdout END ====
[2025-10-09 23:57:44] 2025-10-10 04:57:44,841 [wrapper] ==== wrapper stderr END ====
[2025-10-09 23:57:44]  *** Error codes and diagnostics ***
[2025-10-09 23:57:44]     "exeErrorCode": 0,
[2025-10-09 23:57:44]     "exeErrorDiag": "",
[2025-10-09 23:57:44]     "pilotErrorCode": 0,
[2025-10-09 23:57:44]     "pilotErrorDiag": "",
[2025-10-09 23:57:44]  *** Listing of results directory ***
[2025-10-09 23:57:44] total 406868
[2025-10-09 23:57:44] -rw-r--r-- 1 mark mark    557409 Oct  9 09:08 pilot3.tar.gz
[2025-10-09 23:57:44] -rwx------ 1 mark mark     36292 Oct  9 09:13 runpilot2-wrapper.sh
[2025-10-09 23:57:44] -rw-r--r-- 1 mark mark      5112 Oct  9 09:13 queuedata.json
[2025-10-09 23:57:44] -rw-rw-r-- 1 mark mark       100 Oct  9 23:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 23:57:44] -rwxr-xr-x 1 mark mark      7986 Oct  9 23:03 run_atlas
[2025-10-09 23:57:44] -rw-rw-r-- 1 mark mark       105 Oct  9 23:03 job.xml
[2025-10-09 23:57:44] -rw-r--r-- 2 mark mark 219796628 Oct  9 23:03 EVNT.46676267._000825.pool.root.1
[2025-10-09 23:57:44] -rw-r--r-- 2 mark mark     15120 Oct  9 23:03 start_atlas.sh
[2025-10-09 23:57:44] drwxrwx--x 2 mark mark      4096 Oct  9 23:03 shared
[2025-10-09 23:57:44] -rw-r--r-- 2 mark mark    569676 Oct  9 23:03 input.tar.gz
[2025-10-09 23:57:44] -rw-rw-r-- 1 mark mark      9229 Oct  9 23:03 init_data.xml
[2025-10-09 23:57:44] -rw-rw-r-- 1 mark mark         0 Oct  9 23:03 boinc_setup_complete
[2025-10-09 23:57:44] -rw-rw-r-- 1 mark mark         0 Oct  9 23:03 boinc_lockfile
[2025-10-09 23:57:44] -rw-rw-r-- 1 mark mark      2549 Oct  9 23:03 pandaJob.out
[2025-10-09 23:57:44] -rw------- 1 mark mark    975454 Oct  9 23:03 agis_schedconf.cvmfs.json
[2025-10-09 23:57:44] -rw------- 1 mark mark   1560580 Oct  9 23:03 agis_ddmendpoints.agis.ALL.json
[2025-10-09 23:57:44] drwx------ 5 mark mark      4096 Oct  9 23:03 pilot3
[2025-10-09 23:57:44] -rw------- 1 mark mark 191198270 Oct  9 23:55 HITS.46676269._019853.pool.root.1
[2025-10-09 23:57:44] -rw-rw-r-- 1 mark mark       529 Oct  9 23:56 boinc_task_state.xml
[2025-10-09 23:57:44] -rw------- 1 mark mark        95 Oct  9 23:56 pilot_heartbeat.json
[2025-10-09 23:57:44] -rw------- 1 mark mark      1045 Oct  9 23:56 memory_monitor_summary.json
[2025-10-09 23:57:44] -rw------- 1 mark mark    380628 Oct  9 23:56 log.46676269._019853.job.log.tgz.1
[2025-10-09 23:57:44] -rw------- 1 mark mark      7786 Oct  9 23:56 heartbeat.json
[2025-10-09 23:57:44] -rw-rw-r-- 1 mark mark      8192 Oct  9 23:57 boinc_mmap_file
[2025-10-09 23:57:44] -rw-rw-r-- 1 mark mark        27 Oct  9 23:57 wrapper_checkpoint.txt
[2025-10-09 23:57:44] -rw------- 1 mark mark      4904 Oct  9 23:57 pilotlog.txt
[2025-10-09 23:57:44] -rw------- 1 mark mark    485321 Oct  9 23:57 log.46676269._019853.job.log.1
[2025-10-09 23:57:44] -rw------- 1 mark mark       357 Oct  9 23:57 output.list
[2025-10-09 23:57:44] -rw-rw-r-- 1 mark mark       620 Oct  9 23:57 runtime_log
[2025-10-09 23:57:44] -rw------- 1 mark mark    880640 Oct  9 23:57 result.tar.gz
[2025-10-09 23:57:44] -rw-rw-r-- 1 mark mark      8759 Oct  9 23:57 runtime_log.err
[2025-10-09 23:57:44] -rw------- 1 mark mark       644 Oct  9 23:57 4c3NDmmZ6Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7JaNDmjHFHMm.diag
[2025-10-09 23:57:44] -rw-rw-r-- 1 mark mark     22544 Oct  9 23:57 stderr.txt
[2025-10-09 23:57:44] HITS file was successfully produced:
[2025-10-09 23:57:44] -rw------- 1 mark mark 191198270 Oct  9 23:55 shared/HITS.pool.root.1
[2025-10-09 23:57:44]  *** Contents of shared directory: ***
[2025-10-09 23:57:44] total 402812
[2025-10-09 23:57:44] -rw-r--r-- 2 mark mark 219796628 Oct  9 23:03 ATLAS.root_0
[2025-10-09 23:57:44] -rw-r--r-- 2 mark mark     15120 Oct  9 23:03 start_atlas.sh
[2025-10-09 23:57:44] -rw-r--r-- 2 mark mark    569676 Oct  9 23:03 input.tar.gz
[2025-10-09 23:57:44] -rw------- 1 mark mark 191198270 Oct  9 23:55 HITS.pool.root.1
[2025-10-09 23:57:44] -rw------- 1 mark mark    880640 Oct  9 23:57 result.tar.gz
23:57:46 (1930091): run_atlas exited; CPU time 32068.362899
23:57:46 (1930091): called boinc_finish(0)

</stderr_txt>
]]>

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