Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:16:07 (2213390): wrapper (7.7.26015): starting
12:16:07 (2213390): wrapper: running run_atlas (--nthreads 3)
[2025-10-10 12:16:07] Arguments: --nthreads 3
[2025-10-10 12:16:07] Threads: 3
[2025-10-10 12:16:07] Checking for CVMFS
[2025-10-10 12:16:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 12:16:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 12:16:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 12:16:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 12:16:07] 2.9.2.0 2159162 186 52284 151543 2 56 27218280 36864000 0 130560 0 142029 99.991 7912 1137 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-10 12:16:07] CVMFS is ok
[2025-10-10 12:16:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 12:16:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 12:16:07] Further information can be found at the LHC@home message board.
[2025-10-10 12:16:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 12:16:07] Checking for apptainer binary...
[2025-10-10 12:16:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 12:16:07] Running /usr/bin/apptainer --version
[2025-10-10 12:16:07] apptainer version 1.4.1-1.1
[2025-10-10 12:16:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 12:16:07] thA389a
[2025-10-10 12:16:07] apptainer works
[2025-10-10 12:16:07] Set ATHENA_PROC_NUMBER=3
[2025-10-10 12:16:07] Set ATHENA_CORE_NUMBER=3
[2025-10-10 12:16:07] Starting ATLAS job with PandaID=6837345101
[2025-10-10 12:16:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 13:46:31]  *** The last 200 lines of the pilot log: ***
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 13:46:31] 2025-10-10 11:45:53,235 | INFO     | job 6837345101 has completed (purged errors)
[2025-10-10 13:46:31] 2025-10-10 11:45:53,236 | INFO     | overall cleanup function is called
[2025-10-10 13:46:31] 2025-10-10 11:45:54,242 | INFO     | --- collectZombieJob: --- 10, [2223562]
[2025-10-10 13:46:31] 2025-10-10 11:45:54,242 | INFO     | zombie collector waiting for pid 2223562
[2025-10-10 13:46:31] 2025-10-10 11:45:54,242 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 13:46:31] 2025-10-10 11:45:54,243 | INFO     | collected zombie processes
[2025-10-10 13:46:31] 2025-10-10 11:45:54,243 | INFO     | will attempt to kill all subprocesses of pid=2223562
[2025-10-10 13:46:31] 2025-10-10 11:45:54,285 | INFO     | process IDs to be killed: [2223562] (in reverse order)
[2025-10-10 13:46:31] 2025-10-10 11:45:54,310 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 13:46:31] 2025-10-10 11:45:54,310 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 13:46:31] 2025-10-10 11:45:54,311 | INFO     | did not find any defunct processes belonging to 2223562
[2025-10-10 13:46:31] 2025-10-10 11:45:54,312 | INFO     | did not find any defunct processes belonging to 2223562
[2025-10-10 13:46:31] 2025-10-10 11:45:54,312 | INFO     | ready for new job
[2025-10-10 13:46:31] 2025-10-10 11:45:54,312 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 13:46:31] 2025-10-10 11:45:54,313 | INFO     | ***************************************
[2025-10-10 13:46:31] 2025-10-10 11:45:54,313 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 13:46:31] 2025-10-10 11:45:54,313 | INFO     | ***************************************
[2025-10-10 13:46:31] 2025-10-10 11:45:54,313 | INFO     | 
[2025-10-10 13:46:31] 2025-10-10 11:45:54,314 | INFO     | architecture information:
[2025-10-10 13:46:31] 2025-10-10 11:45:54,314 | INFO     | executing command: cat /etc/os-release
[2025-10-10 13:46:31] 2025-10-10 11:45:54,323 | INFO     | cat /etc/os-release:
[2025-10-10 13:46:31] NAME="CentOS Linux"
[2025-10-10 13:46:31] VERSION="7 (Core)"
[2025-10-10 13:46:31] ID="centos"
[2025-10-10 13:46:31] ID_LIKE="rhel fedora"
[2025-10-10 13:46:31] VERSION_ID="7"
[2025-10-10 13:46:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 13:46:31] ANSI_COLOR="0;31"
[2025-10-10 13:46:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 13:46:31] HOME_URL="https://www.centos.org/"
[2025-10-10 13:46:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 13:46:31] 
[2025-10-10 13:46:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 13:46:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 13:46:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 13:46:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 13:46:31] 
[2025-10-10 13:46:31] 2025-10-10 11:45:54,323 | INFO     | ***************************************
[2025-10-10 13:46:31] 2025-10-10 11:45:54,826 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-10 13:46:31] 2025-10-10 11:45:54,839 | INFO     | sufficient remaining disk space (232776531968 B)
[2025-10-10 13:46:31] 2025-10-10 11:45:54,840 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 13:46:31] 2025-10-10 11:45:54,840 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 13:46:31] 2025-10-10 11:45:54,840 | INFO     | update_server=False
[2025-10-10 13:46:31] 2025-10-10 11:45:54,840 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 13:46:31] 2025-10-10 11:45:54,840 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-10 13:46:31] 2025-10-10 11:45:54,840 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 13:46:31] 2025-10-10 11:45:54,840 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 13:46:31] 2025-10-10 11:45:54,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 13:46:31] 2025-10-10 11:45:54,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 13:46:31] 2025-10-10 11:45:54,881 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 13:46:31] 2025-10-10 11:45:54,904 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 13:46:31] 2025-10-10 11:45:55,270 | INFO     | all job control threads have been joined
[2025-10-10 13:46:31] 2025-10-10 11:45:55,463 | INFO     | all data control threads have been joined
[2025-10-10 13:46:31] 2025-10-10 11:45:55,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 13:46:31] 2025-10-10 11:45:55,711 | INFO     | aborting loop
[2025-10-10 13:46:31] 2025-10-10 11:45:55,845 | INFO     | [job] retrieve thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:55,846 | INFO     | [job] queue monitor thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:55,973 | INFO     | all payload control threads have been joined
[2025-10-10 13:46:31] 2025-10-10 11:45:56,276 | INFO     | [job] control thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:56,285 | INFO     | [payload] validate_post thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:56,469 | INFO     | [data] control thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:56,649 | INFO     | [data] copytool_in thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:56,684 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:56,685 | INFO     | [job] validate thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:56,711 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:56,714 | INFO     | [job] job monitor thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:56,879 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:56,887 | INFO     | [data] copytool_out thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:56,979 | INFO     | [payload] control thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:57,317 | INFO     | [payload] failed_post thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:45:58,909 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:46:04,923 | INFO     | job.realtimelogging is not enabled
[2025-10-10 13:46:31] 2025-10-10 11:46:05,928 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 13:46:31] 2025-10-10 11:46:17,835 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-10-10 13:46:31] 2025-10-10 11:46:25,705 | INFO     | [monitor] cgroup control has ended
[2025-10-10 13:46:31] 2025-10-10 11:46:26,418 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139885190760256)>', '<ExcThread(monitor, started 139884694054656)>']
[2025-10-10 13:46:31] 2025-10-10 11:46:27,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 13:46:31] 2025-10-10 11:46:27,004 | INFO     | [monitor] control thread has ended
[2025-10-10 13:46:31] 2025-10-10 11:46:31,444 | INFO     | all workflow threads have been joined
[2025-10-10 13:46:31] 2025-10-10 11:46:31,444 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 13:46:31] 2025-10-10 11:46:31,445 | INFO     | traces error code: 0
[2025-10-10 13:46:31] 2025-10-10 11:46:31,445 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 13:46:31] 2025-10-10 11:46:31,491 [wrapper] ==== pilot stdout END ====
[2025-10-10 13:46:31] 2025-10-10 11:46:31,494 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 13:46:31] 2025-10-10 11:46:31,497 [wrapper] pilotpid: 2217118
[2025-10-10 13:46:31] 2025-10-10 11:46:31,500 [wrapper] Pilot exit status: 0
[2025-10-10 13:46:31] 2025-10-10 11:46:31,507 [wrapper] pandaids: 6837345101
[2025-10-10 13:46:31] 2025-10-10 11:46:31,524 [wrapper] cleanup supervisor_pilot 2238348 2217119
[2025-10-10 13:46:31] 2025-10-10 11:46:31,526 [wrapper] Test setup, not cleaning
[2025-10-10 13:46:31] 2025-10-10 11:46:31,529 [wrapper] apfmon messages muted
[2025-10-10 13:46:31] 2025-10-10 11:46:31,531 [wrapper] ==== wrapper stdout END ====
[2025-10-10 13:46:31] 2025-10-10 11:46:31,533 [wrapper] ==== wrapper stderr END ====
[2025-10-10 13:46:31]  *** Error codes and diagnostics ***
[2025-10-10 13:46:31]     "exeErrorCode": 0,
[2025-10-10 13:46:31]     "exeErrorDiag": "",
[2025-10-10 13:46:31]     "pilotErrorCode": 0,
[2025-10-10 13:46:31]     "pilotErrorDiag": "",
[2025-10-10 13:46:31]  *** Listing of results directory ***
[2025-10-10 13:46:31] total 411848
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc    557409 Oct  9 15:56 pilot3.tar.gz
[2025-10-10 13:46:31] -rwx------ 1 boinc boinc     36292 Oct  9 16:04 runpilot2-wrapper.sh
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc      5112 Oct  9 16:04 queuedata.json
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc       100 Oct 10 12:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 13:46:31] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 12:16 run_atlas
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc       105 Oct 10 12:16 job.xml
[2025-10-10 13:46:31] -rw-r--r-- 2 boinc boinc 222365752 Oct 10 12:16 EVNT.46676267._000811.pool.root.1
[2025-10-10 13:46:31] -rw-r--r-- 2 boinc boinc    569679 Oct 10 12:16 input.tar.gz
[2025-10-10 13:46:31] -rw-r--r-- 2 boinc boinc     15120 Oct 10 12:16 start_atlas.sh
[2025-10-10 13:46:31] drwxrwx--x 2 boinc boinc      4096 Oct 10 12:16 shared
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc         0 Oct 10 12:16 boinc_setup_complete
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc      6198 Oct 10 12:16 init_data.xml
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc         0 Oct 10 12:16 boinc_lockfile
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc      2549 Oct 10 12:16 pandaJob.out
[2025-10-10 13:46:31] -rw------- 1 boinc boinc    975528 Oct 10 12:16 agis_schedconf.cvmfs.json
[2025-10-10 13:46:31] -rw------- 1 boinc boinc   1560580 Oct 10 12:16 agis_ddmendpoints.agis.ALL.json
[2025-10-10 13:46:31] drwx------ 5 boinc boinc      4096 Oct 10 12:16 pilot3
[2025-10-10 13:46:31] -rw------- 1 boinc boinc 193396304 Oct 10 13:45 HITS.46676269._019534.pool.root.1
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc       529 Oct 10 13:45 boinc_task_state.xml
[2025-10-10 13:46:31] -rw------- 1 boinc boinc      1023 Oct 10 13:45 memory_monitor_summary.json
[2025-10-10 13:46:31] -rw------- 1 boinc boinc    251132 Oct 10 13:45 log.46676269._019534.job.log.tgz.1
[2025-10-10 13:46:31] -rw------- 1 boinc boinc        95 Oct 10 13:45 pilot_heartbeat.json
[2025-10-10 13:46:31] -rw------- 1 boinc boinc      7760 Oct 10 13:45 heartbeat.json
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc      8192 Oct 10 13:46 boinc_mmap_file
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc        27 Oct 10 13:46 wrapper_checkpoint.txt
[2025-10-10 13:46:31] -rw------- 1 boinc boinc      4628 Oct 10 13:46 pilotlog.txt
[2025-10-10 13:46:31] -rw------- 1 boinc boinc    784794 Oct 10 13:46 log.46676269._019534.job.log.1
[2025-10-10 13:46:31] -rw------- 1 boinc boinc       357 Oct 10 13:46 output.list
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc       620 Oct 10 13:46 runtime_log
[2025-10-10 13:46:31] -rw------- 1 boinc boinc   1054720 Oct 10 13:46 result.tar.gz
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc      8782 Oct 10 13:46 runtime_log.err
[2025-10-10 13:46:31] -rw------- 1 boinc boinc       659 Oct 10 13:46 4cCMDmpQ6Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmm3NMDmaHqWPm.diag
[2025-10-10 13:46:31] -rw-r--r-- 1 boinc boinc     12462 Oct 10 13:46 stderr.txt
[2025-10-10 13:46:31] HITS file was successfully produced:
[2025-10-10 13:46:31] -rw------- 1 boinc boinc 193396304 Oct 10 13:45 shared/HITS.pool.root.1
[2025-10-10 13:46:31]  *** Contents of shared directory: ***
[2025-10-10 13:46:31] total 407636
[2025-10-10 13:46:31] -rw-r--r-- 2 boinc boinc 222365752 Oct 10 12:16 ATLAS.root_0
[2025-10-10 13:46:31] -rw-r--r-- 2 boinc boinc    569679 Oct 10 12:16 input.tar.gz
[2025-10-10 13:46:31] -rw-r--r-- 2 boinc boinc     15120 Oct 10 12:16 start_atlas.sh
[2025-10-10 13:46:31] -rw------- 1 boinc boinc 193396304 Oct 10 13:45 HITS.pool.root.1
[2025-10-10 13:46:31] -rw------- 1 boinc boinc   1054720 Oct 10 13:46 result.tar.gz
13:46:32 (2213390): run_atlas exited; CPU time 15346.119985
13:46:32 (2213390): called boinc_finish(0)

</stderr_txt>
]]>

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