Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:41:22 (1720157): wrapper (7.7.26015): starting
03:41:22 (1720157): wrapper: running run_atlas (--nthreads 3)
[2025-10-10 03:41:22] Arguments: --nthreads 3
[2025-10-10 03:41:22] Threads: 3
[2025-10-10 03:41:22] Checking for CVMFS
[2025-10-10 03:41:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 03:41:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 03:41:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 03:41:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 03:41:23] 2.9.2.0 1520902 673 69276 151529 3 57 22574226 36864000 0 130560 0 525406 99.989 22702 843 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-10 03:41:23] CVMFS is ok
[2025-10-10 03:41:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 03:41:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 03:41:23] Further information can be found at the LHC@home message board.
[2025-10-10 03:41:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 03:41:23] Checking for apptainer binary...
[2025-10-10 03:41:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 03:41:23] Running /usr/bin/apptainer --version
[2025-10-10 03:41:23] apptainer version 1.4.1-1.1
[2025-10-10 03:41:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 03:41:23] magicA250a
[2025-10-10 03:41:23] apptainer works
[2025-10-10 03:41:23] Set ATHENA_PROC_NUMBER=3
[2025-10-10 03:41:23] Set ATHENA_CORE_NUMBER=3
[2025-10-10 03:41:23] Starting ATLAS job with PandaID=6832200294
[2025-10-10 03:41:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 04:56:01]  *** The last 200 lines of the pilot log: ***
[2025-10-10 04:56:01] 2025-10-10 02:55:29,127 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 04:56:01] 2025-10-10 02:55:29,127 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 04:56:01] 2025-10-10 02:55:29,127 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 04:56:01] 2025-10-10 02:55:29,127 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 04:56:01] 2025-10-10 02:55:29,127 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 04:56:01] 2025-10-10 02:55:29,128 | INFO     | job 6832200294 has completed (purged errors)
[2025-10-10 04:56:01] 2025-10-10 02:55:29,128 | INFO     | overall cleanup function is called
[2025-10-10 04:56:01] 2025-10-10 02:55:30,134 | INFO     | --- collectZombieJob: --- 10, [1730297]
[2025-10-10 04:56:01] 2025-10-10 02:55:30,134 | INFO     | zombie collector waiting for pid 1730297
[2025-10-10 04:56:01] 2025-10-10 02:55:30,134 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 04:56:01] 2025-10-10 02:55:30,134 | INFO     | collected zombie processes
[2025-10-10 04:56:01] 2025-10-10 02:55:30,134 | INFO     | will attempt to kill all subprocesses of pid=1730297
[2025-10-10 04:56:01] 2025-10-10 02:55:30,177 | INFO     | process IDs to be killed: [1730297] (in reverse order)
[2025-10-10 04:56:01] 2025-10-10 02:55:30,200 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 04:56:01] 2025-10-10 02:55:30,201 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 04:56:01] 2025-10-10 02:55:30,202 | INFO     | did not find any defunct processes belonging to 1730297
[2025-10-10 04:56:01] 2025-10-10 02:55:30,203 | INFO     | did not find any defunct processes belonging to 1730297
[2025-10-10 04:56:01] 2025-10-10 02:55:30,203 | INFO     | ready for new job
[2025-10-10 04:56:01] 2025-10-10 02:55:30,203 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 04:56:01] 2025-10-10 02:55:30,204 | INFO     | ***************************************
[2025-10-10 04:56:01] 2025-10-10 02:55:30,204 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-10 04:56:01] 2025-10-10 02:55:30,204 | INFO     | ***************************************
[2025-10-10 04:56:01] 2025-10-10 02:55:30,204 | INFO     | 
[2025-10-10 04:56:01] 2025-10-10 02:55:30,204 | INFO     | architecture information:
[2025-10-10 04:56:01] 2025-10-10 02:55:30,204 | INFO     | executing command: cat /etc/os-release
[2025-10-10 04:56:01] 2025-10-10 02:55:30,212 | INFO     | cat /etc/os-release:
[2025-10-10 04:56:01] NAME="CentOS Linux"
[2025-10-10 04:56:01] VERSION="7 (Core)"
[2025-10-10 04:56:01] ID="centos"
[2025-10-10 04:56:01] ID_LIKE="rhel fedora"
[2025-10-10 04:56:01] VERSION_ID="7"
[2025-10-10 04:56:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 04:56:01] ANSI_COLOR="0;31"
[2025-10-10 04:56:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 04:56:01] HOME_URL="https://www.centos.org/"
[2025-10-10 04:56:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 04:56:01] 
[2025-10-10 04:56:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 04:56:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 04:56:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 04:56:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 04:56:01] 
[2025-10-10 04:56:01] 2025-10-10 02:55:30,213 | INFO     | ***************************************
[2025-10-10 04:56:01] 2025-10-10 02:55:30,716 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-10 04:56:01] 2025-10-10 02:55:30,727 | INFO     | sufficient remaining disk space (337434902528 B)
[2025-10-10 04:56:01] 2025-10-10 02:55:30,727 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 04:56:01] 2025-10-10 02:55:30,727 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 04:56:01] 2025-10-10 02:55:30,727 | INFO     | update_server=False
[2025-10-10 04:56:01] 2025-10-10 02:55:30,727 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 04:56:01] 2025-10-10 02:55:30,728 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 04:56:01] 2025-10-10 02:55:30,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 04:56:01] 2025-10-10 02:55:30,728 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 04:56:01] 2025-10-10 02:55:30,728 | INFO     | aborting loop
[2025-10-10 04:56:01] 2025-10-10 02:55:31,141 | INFO     | all payload control threads have been joined
[2025-10-10 04:56:01] 2025-10-10 02:55:31,733 | INFO     | [job] retrieve thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:31,733 | INFO     | [job] job monitor thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:31,733 | INFO     | [job] queue monitor thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:31,767 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:31,810 | INFO     | all data control threads have been joined
[2025-10-10 04:56:01] 2025-10-10 02:55:31,987 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:32,147 | INFO     | [payload] control thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:32,154 | INFO     | all job control threads have been joined
[2025-10-10 04:56:01] 2025-10-10 02:55:32,158 | INFO     | [data] copytool_in thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:32,396 | INFO     | [payload] validate_post thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:32,610 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 04:56:01] 2025-10-10 02:55:32,733 | INFO     | [payload] failed_post thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:32,733 | INFO     | [data] copytool_out thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:32,812 | INFO     | [data] control thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:32,815 | INFO     | [job] validate thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:32,832 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:32,897 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:33,160 | INFO     | [job] control thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:33,436 | INFO     | [monitor] cgroup control has ended
[2025-10-10 04:56:01] 2025-10-10 02:55:36,617 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 04:56:01] 2025-10-10 02:55:37,059 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140299085379392)>', '<ExcThread(monitor, started 140298445379328)>']
[2025-10-10 04:56:01] 2025-10-10 02:55:42,068 | INFO     | all workflow threads have been joined
[2025-10-10 04:56:01] 2025-10-10 02:55:42,069 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 04:56:01] 2025-10-10 02:55:42,069 | INFO     | traces error code: 0
[2025-10-10 04:56:01] 2025-10-10 02:55:42,069 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 04:56:01] 2025-10-10 02:56:01,796 | INFO     | PID=1723869 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 04:56:01] 2025-10-10 02:56:01,797 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 04:56:01] 2025-10-10 02:56:01,797 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 04:56:01] 2025-10-10 02:56:01,797 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 04:56:01] 2025-10-10 02:56:01,797 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 04:56:01] 2025-10-10 02:56:01,797 | INFO     | [monitor] control thread has ended
[2025-10-10 04:56:01] 2025-10-10 02:56:01,843 [wrapper] ==== pilot stdout END ====
[2025-10-10 04:56:01] 2025-10-10 02:56:01,845 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 04:56:01] 2025-10-10 02:56:01,847 [wrapper] pilotpid: 1723869
[2025-10-10 04:56:01] 2025-10-10 02:56:01,850 [wrapper] Pilot exit status: 0
[2025-10-10 04:56:01] 2025-10-10 02:56:01,857 [wrapper] pandaids: 6832200294
[2025-10-10 04:56:01] 2025-10-10 02:56:01,872 [wrapper] cleanup supervisor_pilot 1739640 1723870
[2025-10-10 04:56:01] 2025-10-10 02:56:01,875 [wrapper] Test setup, not cleaning
[2025-10-10 04:56:01] 2025-10-10 02:56:01,877 [wrapper] apfmon messages muted
[2025-10-10 04:56:01] 2025-10-10 02:56:01,879 [wrapper] ==== wrapper stdout END ====
[2025-10-10 04:56:01] 2025-10-10 02:56:01,881 [wrapper] ==== wrapper stderr END ====
[2025-10-10 04:56:01]  *** Error codes and diagnostics ***
[2025-10-10 04:56:01]     "exeErrorCode": 0,
[2025-10-10 04:56:01]     "exeErrorDiag": "",
[2025-10-10 04:56:01]     "pilotErrorCode": 0,
[2025-10-10 04:56:01]     "pilotErrorDiag": "",
[2025-10-10 04:56:01]  *** Listing of results directory ***
[2025-10-10 04:56:01] total 390540
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc    552446 Oct  6 02:57 pilot3.tar.gz
[2025-10-10 04:56:01] -rwx------ 1 boinc boinc     36292 Oct  6 03:05 runpilot2-wrapper.sh
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc      5112 Oct  6 03:05 queuedata.json
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc       100 Oct 10 03:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 04:56:01] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 03:41 run_atlas
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc       105 Oct 10 03:41 job.xml
[2025-10-10 04:56:01] -rw-r--r-- 2 boinc boinc 217419605 Oct 10 03:41 EVNT.46376901._003755.pool.root.1
[2025-10-10 04:56:01] -rw-r--r-- 2 boinc boinc    565597 Oct 10 03:41 input.tar.gz
[2025-10-10 04:56:01] -rw-r--r-- 2 boinc boinc     15120 Oct 10 03:41 start_atlas.sh
[2025-10-10 04:56:01] drwxrwx--x 2 boinc boinc      4096 Oct 10 03:41 shared
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc         0 Oct 10 03:41 boinc_setup_complete
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc      6442 Oct 10 03:41 init_data.xml
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc         0 Oct 10 03:41 boinc_lockfile
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc      2518 Oct 10 03:41 pandaJob.out
[2025-10-10 04:56:01] -rw------- 1 boinc boinc    975454 Oct 10 03:41 agis_schedconf.cvmfs.json
[2025-10-10 04:56:01] -rw------- 1 boinc boinc   1560580 Oct 10 03:41 agis_ddmendpoints.agis.ALL.json
[2025-10-10 04:56:01] drwx------ 4 boinc boinc      4096 Oct 10 03:41 pilot3
[2025-10-10 04:56:01] -rw------- 1 boinc boinc 176816240 Oct 10 04:55 HITS.46376905._101569.pool.root.1
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc       529 Oct 10 04:55 boinc_task_state.xml
[2025-10-10 04:56:01] -rw------- 1 boinc boinc      1023 Oct 10 04:55 memory_monitor_summary.json
[2025-10-10 04:56:01] -rw------- 1 boinc boinc    245163 Oct 10 04:55 log.46376905._101569.job.log.tgz.1
[2025-10-10 04:56:01] -rw------- 1 boinc boinc      7775 Oct 10 04:55 heartbeat.json
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc        27 Oct 10 04:56 wrapper_checkpoint.txt
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc      8192 Oct 10 04:56 boinc_mmap_file
[2025-10-10 04:56:01] -rw------- 1 boinc boinc       747 Oct 10 04:56 pilotlog.txt
[2025-10-10 04:56:01] -rw------- 1 boinc boinc        95 Oct 10 04:56 pilot_heartbeat.json
[2025-10-10 04:56:01] -rw------- 1 boinc boinc    654872 Oct 10 04:56 log.46376905._101569.job.log.1
[2025-10-10 04:56:01] -rw------- 1 boinc boinc       357 Oct 10 04:56 output.list
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc       620 Oct 10 04:56 runtime_log
[2025-10-10 04:56:01] -rw------- 1 boinc boinc    921600 Oct 10 04:56 result.tar.gz
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc      8797 Oct 10 04:56 runtime_log.err
[2025-10-10 04:56:01] -rw------- 1 boinc boinc       662 Oct 10 04:56 27lMDmEqoP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmy4HMDmoQcbzn.diag
[2025-10-10 04:56:01] -rw-r--r-- 1 boinc boinc     11316 Oct 10 04:56 stderr.txt
[2025-10-10 04:56:01] HITS file was successfully produced:
[2025-10-10 04:56:01] -rw------- 1 boinc boinc 176816240 Oct 10 04:55 shared/HITS.pool.root.1
[2025-10-10 04:56:01]  *** Contents of shared directory: ***
[2025-10-10 04:56:01] total 386480
[2025-10-10 04:56:01] -rw-r--r-- 2 boinc boinc 217419605 Oct 10 03:41 ATLAS.root_0
[2025-10-10 04:56:01] -rw-r--r-- 2 boinc boinc    565597 Oct 10 03:41 input.tar.gz
[2025-10-10 04:56:01] -rw-r--r-- 2 boinc boinc     15120 Oct 10 03:41 start_atlas.sh
[2025-10-10 04:56:01] -rw------- 1 boinc boinc 176816240 Oct 10 04:55 HITS.pool.root.1
[2025-10-10 04:56:01] -rw------- 1 boinc boinc    921600 Oct 10 04:56 result.tar.gz
04:56:03 (1720157): run_atlas exited; CPU time 12679.134526
04:56:03 (1720157): called boinc_finish(0)

</stderr_txt>
]]>

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