Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:53:50 (3338368): wrapper (7.7.26015): starting
16:53:50 (3338368): wrapper: running run_atlas (--nthreads 9)
[2025-10-09 16:53:50] Arguments: --nthreads 9
[2025-10-09 16:53:50] Threads: 9
[2025-10-09 16:53:50] Checking for CVMFS
[2025-10-09 16:53:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 16:53:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 16:53:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 16:53:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 16:53:52] 2.13.2.0 3269412 31912 346160 151522 3 674 31082537 40960001 41567 16776704 0 390881266 99.830 172828371 37068 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 16:53:52] CVMFS is ok
[2025-10-09 16:53:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 16:53:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 16:53:52] Further information can be found at the LHC@home message board.
[2025-10-09 16:53:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 16:53:52] Checking for apptainer binary...
[2025-10-09 16:53:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 16:53:52] Running /usr/bin/apptainer --version
[2025-10-09 16:53:52] apptainer version 1.4.3-1.el9
[2025-10-09 16:53:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 16:53:53] c8-16-2.aglt2.org
[2025-10-09 16:53:53] apptainer works
[2025-10-09 16:53:53] Set ATHENA_PROC_NUMBER=9
[2025-10-09 16:53:53] Set ATHENA_CORE_NUMBER=9
[2025-10-09 16:53:53] Starting ATLAS job with PandaID=6837344320
[2025-10-09 16:53:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 17:53:54]  *** The last 200 lines of the pilot log: ***
[2025-10-09 17:53:54] 2025-10-09 21:53:03,032 | INFO     |  -- lfn=log.46676269._019046.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 17:53:54] 2025-10-09 21:53:03,032 | INFO     | stage-out finished correctly
[2025-10-09 17:53:54] 2025-10-09 21:53:04,297 | INFO     | time since job start (3512s) is within the limit (172800.0s)
[2025-10-09 17:53:54] 2025-10-09 21:53:06,305 | INFO     | time since job start (3514s) is within the limit (172800.0s)
[2025-10-09 17:53:54] 2025-10-09 21:53:06,576 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 17:53:54] 2025-10-09 21:53:07,543 | WARNING  | process 3375465 can no longer be monitored (due to stat problems) - aborting
[2025-10-09 17:53:54] 2025-10-09 21:53:07,543 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837344320/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 17:53:54] 2025-10-09 21:53:08,321 | INFO     | number of running child processes to parent process 3375465: 1
[2025-10-09 17:53:54] 2025-10-09 21:53:08,321 | INFO     | maximum number of monitored processes: 6
[2025-10-09 17:53:54] 2025-10-09 21:53:08,321 | INFO     | time since job start (3516s) is within the limit (172800.0s)
[2025-10-09 17:53:54] 2025-10-09 21:53:09,291 | INFO     | job 6837344320 has state=finished
[2025-10-09 17:53:54] 2025-10-09 21:53:09,291 | INFO     | preparing for final server update for job 6837344320 in state='finished'
[2025-10-09 17:53:54] 2025-10-09 21:53:09,291 | INFO     | this job has now completed (state=finished)
[2025-10-09 17:53:54] 2025-10-09 21:53:09,292 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 17:53:54] 2025-10-09 21:53:09,292 | INFO     | log transfer has been attempted: DONE
[2025-10-09 17:53:54] 2025-10-09 21:53:09,292 | INFO     | job 6837344320 has finished - writing final server update
[2025-10-09 17:53:54] 2025-10-09 21:53:09,292 | INFO     | total number of processed events: 400 (read)
[2025-10-09 17:53:54] 2025-10-09 21:53:09,292 | INFO     | executing command: lscpu
[2025-10-09 17:53:54] 2025-10-09 21:53:09,399 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 17:53:54] 2025-10-09 21:53:10,328 | INFO     | time since job start (3518s) is within the limit (172800.0s)
[2025-10-09 17:53:54] 2025-10-09 21:53:10,825 | INFO     | monitor loop #226: job 0:6837344320 is in state 'finished'
[2025-10-09 17:53:54] 2025-10-09 21:53:10,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:53:54] 2025-10-09 21:53:12,334 | INFO     | time since job start (3520s) is within the limit (172800.0s)
[2025-10-09 17:53:54] 2025-10-09 21:53:13,334 | INFO     | monitor loop #227: job 0:6837344320 is in state 'finished'
[2025-10-09 17:53:54] 2025-10-09 21:53:13,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:53:54] 2025-10-09 21:53:14,341 | INFO     | time since job start (3522s) is within the limit (172800.0s)
[2025-10-09 17:53:54] 2025-10-09 21:53:15,841 | INFO     | monitor loop #228: job 0:6837344320 is in state 'finished'
[2025-10-09 17:53:54] 2025-10-09 21:53:15,841 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:53:54] 2025-10-09 21:53:16,346 | INFO     | time since job start (3524s) is within the limit (172800.0s)
[2025-10-09 17:53:54] 2025-10-09 21:53:18,307 | INFO     | PID=3349296 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-09 17:53:54] 2025-10-09 21:53:18,307 | INFO     | .. there are 71 such processes running
[2025-10-09 17:53:54] 2025-10-09 21:53:18,355 | INFO     | monitor loop #229: job 0:6837344320 is in state 'finished'
[2025-10-09 17:53:54] 2025-10-09 21:53:18,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:53:54] 2025-10-09 21:53:19,309 | INFO     | time since job start (3527s) is within the limit (172800.0s)
[2025-10-09 17:53:54] 2025-10-09 21:53:20,039 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-09 17:53:54] 2025-10-09 21:53:20,044 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.6913749999967
[2025-10-09 17:53:54] 2025-10-09 21:53:20,057 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837344320/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 17:53:54] 2025-10-09 21:53:20,057 | INFO     | extracted standard info from prmon json
[2025-10-09 17:53:54] 2025-10-09 21:53:20,057 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 17:53:54] 2025-10-09 21:53:20,058 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 17:53:54] 2025-10-09 21:53:20,058 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 17:53:54] 2025-10-09 21:53:20,058 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 17:53:54] 2025-10-09 21:53:20,059 | INFO     | fitting pss+swap vs Time
[2025-10-09 17:53:54] 2025-10-09 21:53:20,059 | INFO     | sum of square deviations: 38744912.5
[2025-10-09 17:53:54] 2025-10-09 21:53:20,059 | INFO     | sum of deviations: -241430497.0
[2025-10-09 17:53:54] 2025-10-09 21:53:20,059 | INFO     | mean x: 1760045141.5
[2025-10-09 17:53:54] 2025-10-09 21:53:20,059 | INFO     | mean y: 2191552.44
[2025-10-09 17:53:54] 2025-10-09 21:53:20,059 | INFO     | -- intersect: 10969530122.498207
[2025-10-09 17:53:54] 2025-10-09 21:53:20,059 | INFO     | intersect: 10969530122.498207
[2025-10-09 17:53:54] 2025-10-09 21:53:20,059 | INFO     | chi2: 0.01702514091971344
[2025-10-09 17:53:54] 2025-10-09 21:53:20,059 | INFO     | -- intersect: 10969530122.498207
[2025-10-09 17:53:54] 2025-10-09 21:53:20,059 | INFO     | current memory leak: -6.23 B/s (using 50 data points, chi2=0.02)
[2025-10-09 17:53:54] 2025-10-09 21:53:20,059 | INFO     | could have reported an average CPU frequency of 3798 MHz (5 samples)
[2025-10-09 17:53:54] 2025-10-09 21:53:20,060 | INFO     | ..............................
[2025-10-09 17:53:54] 2025-10-09 21:53:20,060 | INFO     | . Timing measurements:
[2025-10-09 17:53:54] 2025-10-09 21:53:20,060 | INFO     | . get job = 0 s
[2025-10-09 17:53:54] 2025-10-09 21:53:20,060 | INFO     | . initial setup = 3 s
[2025-10-09 17:53:54] 2025-10-09 21:53:20,060 | INFO     | . payload setup = 17 s
[2025-10-09 17:53:54] 2025-10-09 21:53:20,060 | INFO     | . stage-in = 0 s
[2025-10-09 17:53:54] 2025-10-09 21:53:20,060 | INFO     | . payload execution = 3452 s
[2025-10-09 17:53:54] 2025-10-09 21:53:20,060 | INFO     | . stage-out = 0 s
[2025-10-09 17:53:54] 2025-10-09 21:53:20,060 | INFO     | . log creation = 0 s
[2025-10-09 17:53:54] 2025-10-09 21:53:20,060 | INFO     | ..............................
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | 
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | job summary report
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | --------------------------------------------------
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | PanDA job id: 6837344320
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | task id: 46676269
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | errors: (none)
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | pilot state: finished 
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | transexitcode: 0
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | exeerrorcode: 0
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | exeerrordiag: 
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | exitcode: 0
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | exitmsg: OK
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | cpuconsumptiontime: 22296 s
[2025-10-09 17:53:54] 2025-10-09 21:53:20,114 | INFO     | nevents: 400
[2025-10-09 17:53:54] 2025-10-09 21:53:20,115 | INFO     | neventsw: 0
[2025-10-09 17:53:54] 2025-10-09 21:53:20,115 | INFO     | pid: 3375465
[2025-10-09 17:53:54] 2025-10-09 21:53:20,115 | INFO     | pgrp: 3375465
[2025-10-09 17:53:54] 2025-10-09 21:53:20,115 | INFO     | corecount: 9
[2025-10-09 17:53:54] 2025-10-09 21:53:20,115 | INFO     | event service: False
[2025-10-09 17:53:54] 2025-10-09 21:53:20,115 | INFO     | sizes: {0: 2348855, 1: 2348855, 11: 2348883, 19: 2349173, 22: 2349201, 3474: 2374974, 3476: 2383972, 3480: 2384028, 3493: 2384254}
[2025-10-09 17:53:54] 2025-10-09 21:53:20,115 | INFO     | --------------------------------------------------
[2025-10-09 17:53:54] 2025-10-09 21:53:20,115 | INFO     | 
[2025-10-09 17:53:54] 2025-10-09 21:53:20,115 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-09 17:53:54] 2025-10-09 21:53:20,136 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,136 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,137 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,137 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,137 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,137 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,137 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,137 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | job 6837344320 has completed (purged errors)
[2025-10-09 17:53:54] 2025-10-09 21:53:20,138 | INFO     | overall cleanup function is called
[2025-10-09 17:53:54] 2025-10-09 21:53:21,147 | INFO     | --- collectZombieJob: --- 10, [3375465]
[2025-10-09 17:53:54] 2025-10-09 21:53:21,147 | INFO     | zombie collector waiting for pid 3375465
[2025-10-09 17:53:54] 2025-10-09 21:53:21,148 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 17:53:54] 2025-10-09 21:53:21,148 | INFO     | collected zombie processes
[2025-10-09 17:53:54] 2025-10-09 21:53:21,148 | INFO     | will attempt to kill all subprocesses of pid=3375465
[2025-10-09 17:53:54] 2025-10-09 21:53:21,977 | INFO     | process IDs to be killed: [3375465] (in reverse order)
[2025-10-09 17:53:54] 2025-10-09 21:53:22,280 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 17:53:54] 2025-10-09 21:53:22,282 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 17:53:54] 2025-10-09 21:53:22,327 | INFO     | did not find any defunct processes belonging to 3375465
[2025-10-09 17:53:54] 2025-10-09 21:53:22,360 | INFO     | did not find any defunct processes belonging to 3375465
[2025-10-09 17:53:54] 2025-10-09 21:53:22,360 | INFO     | ready for new job
[2025-10-09 17:53:54] 2025-10-09 21:53:22,360 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 17:53:54] 2025-10-09 21:53:22,362 | INFO     | ***************************************
[2025-10-09 17:53:54] 2025-10-09 21:53:22,362 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 17:53:54] 2025-10-09 21:53:22,362 | INFO     | ***************************************
[2025-10-09 17:53:54] 2025-10-09 21:53:22,362 | INFO     | 
[2025-10-09 17:53:54] 2025-10-09 21:53:22,368 | INFO     | architecture information:
[2025-10-09 17:53:54] 2025-10-09 21:53:22,368 | INFO     | executing command: cat /etc/os-release
[2025-10-09 17:53:54] 2025-10-09 21:53:22,392 | INFO     | cat /etc/os-release:
[2025-10-09 17:53:54] NAME="CentOS Linux"
[2025-10-09 17:53:54] VERSION="7 (Core)"
[2025-10-09 17:53:54] ID="centos"
[2025-10-09 17:53:54] ID_LIKE="rhel fedora"
[2025-10-09 17:53:54] VERSION_ID="7"
[2025-10-09 17:53:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 17:53:54] ANSI_COLOR="0;31"
[2025-10-09 17:53:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 17:53:54] HOME_URL="https://www.centos.org/"
[2025-10-09 17:53:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 17:53:54] 
[2025-10-09 17:53:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 17:53:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 17:53:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 17:53:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 17:53:54] 
[2025-10-09 17:53:54] 2025-10-09 21:53:22,392 | INFO     | ***************************************
[2025-10-09 17:53:54] 2025-10-09 21:53:22,897 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-09 17:53:54] 2025-10-09 21:53:23,030 | INFO     | sufficient remaining disk space (166638649344 B)
[2025-10-09 17:53:54] 2025-10-09 21:53:23,030 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 17:53:54] 2025-10-09 21:53:23,031 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 17:53:54] 2025-10-09 21:53:23,031 | INFO     | update_server=False
[2025-10-09 17:53:54] 2025-10-09 21:53:23,031 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 17:53:54] 2025-10-09 21:53:23,375 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-09 17:53:54] 2025-10-09 21:53:23,376 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-09 17:53:54] 2025-10-09 21:53:23,376 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 17:53:54] 2025-10-09 21:53:23,376 | INFO     | will abort loop
[2025-10-09 17:53:54] 2025-10-09 21:53:23,514 | INFO     | all data control threads have been joined
[2025-10-09 17:53:54] 2025-10-09 21:53:23,622 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 17:53:54] 2025-10-09 21:53:24,036 | INFO     | [job] retrieve thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:24,164 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:24,166 | INFO     | all job control threads have been joined
[2025-10-09 17:53:54] 2025-10-09 21:53:24,248 | INFO     | [data] copytool_in thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:24,328 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:24,381 | INFO     | [job] job monitor thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:24,470 | INFO     | all payload control threads have been joined
[2025-10-09 17:53:54] 2025-10-09 21:53:24,479 | INFO     | [job] validate thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:24,520 | INFO     | [data] control thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:24,526 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:24,552 | INFO     | [payload] validate_post thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:24,947 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:25,128 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 17:53:54] 2025-10-09 21:53:25,138 | INFO     | [payload] failed_post thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:25,171 | INFO     | [job] control thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:25,476 | INFO     | [payload] control thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:25,628 | INFO     | [data] copytool_out thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:26,133 | INFO     | [job] queue monitor thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:26,183 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 17:53:54] 2025-10-09 21:53:30,193 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 17:53:54] 2025-10-09 21:53:38,242 | INFO     | [monitor] cgroup control has ended
[2025-10-09 17:53:54] 2025-10-09 21:53:39,866 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140032249386816)>', '<ExcThread(monitor, started 140031737968384)>']
[2025-10-09 17:53:54] 2025-10-09 21:53:44,892 | INFO     | all workflow threads have been joined
[2025-10-09 17:53:54] 2025-10-09 21:53:44,892 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 17:53:54] 2025-10-09 21:53:44,892 | INFO     | traces error code: 0
[2025-10-09 17:53:54] 2025-10-09 21:53:44,892 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 17:53:54] 2025-10-09 21:53:53,415 | INFO     | PID=3349296 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 17:53:54] 2025-10-09 21:53:53,415 | INFO     | .. there are 71 such processes running
[2025-10-09 17:53:54] 2025-10-09 21:53:53,418 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 17:53:54] 2025-10-09 21:53:53,419 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 17:53:54] 2025-10-09 21:53:53,419 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 17:53:54] 2025-10-09 21:53:53,419 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 17:53:54] 2025-10-09 21:53:53,419 | INFO     | [monitor] control thread has ended
[2025-10-09 17:53:54] 2025-10-09 21:53:53,619 [wrapper] ==== pilot stdout END ====
[2025-10-09 17:53:54] 2025-10-09 21:53:53,632 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 17:53:54] 2025-10-09 21:53:53,634 [wrapper] pilotpid: 3349296
[2025-10-09 17:53:54] 2025-10-09 21:53:53,650 [wrapper] Pilot exit status: 0
[2025-10-09 17:53:54] 2025-10-09 21:53:53,667 [wrapper] pandaids: 6837344320
[2025-10-09 17:53:54] 2025-10-09 21:53:53,896 [wrapper] cleanup supervisor_pilot 4116221 3349297
[2025-10-09 17:53:54] 2025-10-09 21:53:53,900 [wrapper] Test setup, not cleaning
[2025-10-09 17:53:54] 2025-10-09 21:53:53,928 [wrapper] apfmon messages muted
[2025-10-09 17:53:54] 2025-10-09 21:53:53,948 [wrapper] ==== wrapper stdout END ====
[2025-10-09 17:53:54] 2025-10-09 21:53:53,985 [wrapper] ==== wrapper stderr END ====
[2025-10-09 17:53:54]  *** Error codes and diagnostics ***
[2025-10-09 17:53:54]     "exeErrorCode": 0,
[2025-10-09 17:53:54]     "exeErrorDiag": "",
[2025-10-09 17:53:54]     "pilotErrorCode": 0,
[2025-10-09 17:53:54]     "pilotErrorDiag": "",
[2025-10-09 17:53:54]  *** Listing of results directory ***
[2025-10-09 17:53:54] total 406544
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 09:37 pilot3.tar.gz
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 09:39 queuedata.json
[2025-10-09 17:53:54] -rwx------. 1 boincer umatlas     36292 Oct  9 09:40 runpilot2-wrapper.sh
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas       100 Oct  9 16:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 17:53:54] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 16:53 run_atlas
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas       105 Oct  9 16:53 job.xml
[2025-10-09 17:53:54] -rw-r--r--. 2 boincer umatlas 221242175 Oct  9 16:53 EVNT.46676267._000789.pool.root.1
[2025-10-09 17:53:54] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 16:53 shared
[2025-10-09 17:53:54] -rw-r--r--. 2 boincer umatlas    569675 Oct  9 16:53 input.tar.gz
[2025-10-09 17:53:54] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 16:53 start_atlas.sh
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas         0 Oct  9 16:53 boinc_lockfile
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas      2549 Oct  9 16:53 pandaJob.out
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas    975454 Oct  9 16:54 agis_schedconf.cvmfs.json
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas   1560401 Oct  9 16:54 agis_ddmendpoints.agis.ALL.json
[2025-10-09 17:53:54] drwx------. 5 boincer umatlas      4096 Oct  9 16:54 pilot3
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas      7161 Oct  9 17:48 init_data.xml
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas 189526836 Oct  9 17:52 HITS.46676269._019046.pool.root.1
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas       529 Oct  9 17:52 boinc_task_state.xml
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas      1036 Oct  9 17:52 memory_monitor_summary.json
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas    327437 Oct  9 17:53 log.46676269._019046.job.log.tgz.1
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas      7782 Oct  9 17:53 heartbeat.json
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 17:53 boinc_mmap_file
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas        27 Oct  9 17:53 wrapper_checkpoint.txt
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas        95 Oct  9 17:53 pilot_heartbeat.json
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas       823 Oct  9 17:53 pilotlog.txt
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas    491078 Oct  9 17:53 log.46676269._019046.job.log.1
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas       357 Oct  9 17:53 output.list
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas       620 Oct  9 17:53 runtime_log
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas    839680 Oct  9 17:53 result.tar.gz
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas       651 Oct  9 17:53 UEpLDmo35Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmZ1NMDm74IoUm.diag
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas      8698 Oct  9 17:53 runtime_log.err
[2025-10-09 17:53:54] -rw-r--r--. 1 boincer umatlas     22246 Oct  9 17:53 stderr.txt
[2025-10-09 17:53:54] HITS file was successfully produced:
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas 189526836 Oct  9 17:52 shared/HITS.pool.root.1
[2025-10-09 17:53:54]  *** Contents of shared directory: ***
[2025-10-09 17:53:54] total 402548
[2025-10-09 17:53:54] -rw-r--r--. 2 boincer umatlas 221242175 Oct  9 16:53 ATLAS.root_0
[2025-10-09 17:53:54] -rw-r--r--. 2 boincer umatlas    569675 Oct  9 16:53 input.tar.gz
[2025-10-09 17:53:54] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 16:53 start_atlas.sh
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas 189526836 Oct  9 17:52 HITS.pool.root.1
[2025-10-09 17:53:54] -rw-------. 1 boincer umatlas    839680 Oct  9 17:53 result.tar.gz
17:53:55 (3338368): run_atlas exited; CPU time 22420.206697
17:53:55 (3338368): called boinc_finish(0)

</stderr_txt>
]]>

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