Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:59:07 (4079818): wrapper (7.7.26015): starting
13:59:07 (4079818): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 13:59:07] Arguments: --nthreads 12
[2025-10-10 13:59:07] Threads: 12
[2025-10-10 13:59:07] Checking for CVMFS
[2025-10-10 13:59:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 13:59:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 13:59:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 13:59:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 13:59:07] 2.13.1.0 2584362 8981 81184 151545 0 57 2237140 4097025 0 130560 0 16327458 99.996 307257 3379 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-10 13:59:07] CVMFS is ok
[2025-10-10 13:59:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 13:59:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 13:59:07] Further information can be found at the LHC@home message board.
[2025-10-10 13:59:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 13:59:07] Checking for apptainer binary...
[2025-10-10 13:59:07] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-10 13:59:07] apptainer is not installed, using version from CVMFS
[2025-10-10 13:59:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 13:59:07] pckelar1.cern.ch
[2025-10-10 13:59:07] apptainer works
[2025-10-10 13:59:07] Set ATHENA_PROC_NUMBER=12
[2025-10-10 13:59:07] Set ATHENA_CORE_NUMBER=12
[2025-10-10 13:59:07] Starting ATLAS job with PandaID=6837337860
[2025-10-10 13:59:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 14:43:24]  *** The last 200 lines of the pilot log: ***
[2025-10-10 14:43:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-10 14:43:24]  replicas=None
[2025-10-10 14:43:24]  scope=mc23_13p6TeV
[2025-10-10 14:43:24]  status=None
[2025-10-10 14:43:24]  status_code=0
[2025-10-10 14:43:24]  storage_token=
[2025-10-10 14:43:24]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6837337860/log.46676269._017382.job.log.tgz.1
[2025-10-10 14:43:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1a/99/log.46676269._017382.job.log.tgz.1
[2025-10-10 14:43:24]  workdir=None
[2025-10-10 14:43:24] ]
[2025-10-10 14:43:24] 2025-10-10 12:42:21,547 | INFO     | transferring file log.46676269._017382.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6837337860/log.46676269._017382.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-10 14:43:24] 2025-10-10 12:42:21,547 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6837337860/log.46676269._017382.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._017382.job
[2025-10-10 14:43:24] 2025-10-10 12:42:21,559 | INFO     | adding to output.list: log.46676269._017382.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1a/99/log.46676269._017382.job.log.tg
[2025-10-10 14:43:24] 2025-10-10 12:42:21,560 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 14:43:24] 2025-10-10 12:42:21,560 | INFO     | summary of transferred files:
[2025-10-10 14:43:24] 2025-10-10 12:42:21,560 | INFO     |  -- lfn=log.46676269._017382.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 14:43:24] 2025-10-10 12:42:21,560 | INFO     | stage-out finished correctly
[2025-10-10 14:43:24] 2025-10-10 12:42:21,604 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 14:43:24] 2025-10-10 12:42:22,369 | INFO     | monitor loop #201: job 0:6837337860 is in state 'finished'
[2025-10-10 14:43:24] 2025-10-10 12:42:22,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 14:43:24] 2025-10-10 12:42:22,898 | INFO     | time since job start (2587s) is within the limit (172800.0s)
[2025-10-10 14:43:24] 2025-10-10 12:42:24,407 | INFO     | job 6837337860 has state=finished
[2025-10-10 14:43:24] 2025-10-10 12:42:24,407 | INFO     | preparing for final server update for job 6837337860 in state='finished'
[2025-10-10 14:43:24] 2025-10-10 12:42:24,407 | INFO     | this job has now completed (state=finished)
[2025-10-10 14:43:24] 2025-10-10 12:42:24,408 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 14:43:24] 2025-10-10 12:42:24,408 | INFO     | log transfer has been attempted: DONE
[2025-10-10 14:43:24] 2025-10-10 12:42:24,408 | INFO     | job 6837337860 has finished - writing final server update
[2025-10-10 14:43:24] 2025-10-10 12:42:24,408 | INFO     | total number of processed events: 400 (read)
[2025-10-10 14:43:24] 2025-10-10 12:42:24,409 | INFO     | executing command: lscpu
[2025-10-10 14:43:24] 2025-10-10 12:42:24,432 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 14:43:24] 2025-10-10 12:42:24,871 | INFO     | monitor loop #202: job 0:6837337860 is in state 'finished'
[2025-10-10 14:43:24] 2025-10-10 12:42:24,872 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 14:43:24] 2025-10-10 12:42:24,902 | INFO     | time since job start (2589s) is within the limit (172800.0s)
[2025-10-10 14:43:24] 2025-10-10 12:42:26,001 | INFO     | PID=4083644 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 14:43:24] 2025-10-10 12:42:27,001 | INFO     | time since job start (2592s) is within the limit (172800.0s)
[2025-10-10 14:43:24] 2025-10-10 12:42:27,374 | INFO     | monitor loop #203: job 0:6837337860 is in state 'finished'
[2025-10-10 14:43:24] 2025-10-10 12:42:27,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 14:43:24] 2025-10-10 12:42:28,921 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 14:43:24] 2025-10-10 12:42:28,923 | INFO     | found 20 cores (10 cores per socket, 2 sockets) , CPU MHz: 2275.6866
[2025-10-10 14:43:24] 2025-10-10 12:42:28,926 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6837337860/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 14:43:24] 2025-10-10 12:42:28,926 | INFO     | extracted standard info from prmon json
[2025-10-10 14:43:24] 2025-10-10 12:42:28,926 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 14:43:24] 2025-10-10 12:42:28,926 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 14:43:24] 2025-10-10 12:42:28,926 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 14:43:24] 2025-10-10 12:42:28,926 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 14:43:24] 2025-10-10 12:42:28,927 | INFO     | fitting pss+swap vs Time
[2025-10-10 14:43:24] 2025-10-10 12:42:28,927 | INFO     | sum of square deviations: 13283970.0
[2025-10-10 14:43:24] 2025-10-10 12:42:28,928 | INFO     | sum of deviations: -3216942604.0000005
[2025-10-10 14:43:24] 2025-10-10 12:42:28,928 | INFO     | mean x: 1760098921.0
[2025-10-10 14:43:24] 2025-10-10 12:42:28,928 | INFO     | mean y: 2890599.1142857145
[2025-10-10 14:43:24] 2025-10-10 12:42:28,928 | INFO     | -- intersect: 426241221927.72546
[2025-10-10 14:43:24] 2025-10-10 12:42:28,928 | INFO     | intersect: 426241221927.72546
[2025-10-10 14:43:24] 2025-10-10 12:42:28,928 | INFO     | chi2: 0.05387138683008336
[2025-10-10 14:43:24] 2025-10-10 12:42:28,928 | INFO     | -- intersect: 426241221927.72546
[2025-10-10 14:43:24] 2025-10-10 12:42:28,928 | INFO     | current memory leak: -242.17 B/s (using 35 data points, chi2=0.05)
[2025-10-10 14:43:24] 2025-10-10 12:42:28,928 | INFO     | could have reported an average CPU frequency of 2477 MHz (5 samples)
[2025-10-10 14:43:24] 2025-10-10 12:42:28,929 | INFO     | ..............................
[2025-10-10 14:43:24] 2025-10-10 12:42:28,929 | INFO     | . Timing measurements:
[2025-10-10 14:43:24] 2025-10-10 12:42:28,929 | INFO     | . get job = 0 s
[2025-10-10 14:43:24] 2025-10-10 12:42:28,929 | INFO     | . initial setup = 1 s
[2025-10-10 14:43:24] 2025-10-10 12:42:28,929 | INFO     | . payload setup = 6 s
[2025-10-10 14:43:24] 2025-10-10 12:42:28,929 | INFO     | . stage-in = 0 s
[2025-10-10 14:43:24] 2025-10-10 12:42:28,929 | INFO     | . payload execution = 2561 s
[2025-10-10 14:43:24] 2025-10-10 12:42:28,929 | INFO     | . stage-out = 0 s
[2025-10-10 14:43:24] 2025-10-10 12:42:28,929 | INFO     | . log creation = 0 s
[2025-10-10 14:43:24] 2025-10-10 12:42:28,929 | INFO     | ..............................
[2025-10-10 14:43:24] 2025-10-10 12:42:28,977 | INFO     | 
[2025-10-10 14:43:24] 2025-10-10 12:42:28,977 | INFO     | job summary report
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | --------------------------------------------------
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | PanDA job id: 6837337860
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | task id: 46676269
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | errors: (none)
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | pilot state: finished 
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | transexitcode: 0
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | exeerrorcode: 0
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | exeerrordiag: 
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | exitcode: 0
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | exitmsg: OK
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | cpuconsumptiontime: 28110 s
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | nevents: 400
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | neventsw: 0
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | pid: 4091093
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | pgrp: 4091093
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | corecount: 12
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | event service: False
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | sizes: {0: 2348855, 4: 2349117, 11: 2349145, 2571: 2374397, 2572: 2383451, 2580: 2383621}
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | --------------------------------------------------
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | 
[2025-10-10 14:43:24] 2025-10-10 12:42:28,978 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-10 14:43:24] 2025-10-10 12:42:28,993 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,993 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,993 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,993 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,993 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,993 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | job 6837337860 has completed (purged errors)
[2025-10-10 14:43:24] 2025-10-10 12:42:28,994 | INFO     | overall cleanup function is called
[2025-10-10 14:43:24] 2025-10-10 12:42:30,001 | INFO     | --- collectZombieJob: --- 10, [4091093]
[2025-10-10 14:43:24] 2025-10-10 12:42:30,001 | INFO     | zombie collector waiting for pid 4091093
[2025-10-10 14:43:24] 2025-10-10 12:42:30,001 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 14:43:24] 2025-10-10 12:42:30,001 | INFO     | collected zombie processes
[2025-10-10 14:43:24] 2025-10-10 12:42:30,001 | INFO     | will attempt to kill all subprocesses of pid=4091093
[2025-10-10 14:43:24] 2025-10-10 12:42:30,083 | INFO     | process IDs to be killed: [4091093] (in reverse order)
[2025-10-10 14:43:24] 2025-10-10 12:42:30,114 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 14:43:24] 2025-10-10 12:42:30,114 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 14:43:24] 2025-10-10 12:42:30,116 | INFO     | did not find any defunct processes belonging to 4091093
[2025-10-10 14:43:24] 2025-10-10 12:42:30,118 | INFO     | did not find any defunct processes belonging to 4091093
[2025-10-10 14:43:24] 2025-10-10 12:42:30,118 | INFO     | ready for new job
[2025-10-10 14:43:24] 2025-10-10 12:42:30,118 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 14:43:24] 2025-10-10 12:42:30,119 | INFO     | ***************************************
[2025-10-10 14:43:24] 2025-10-10 12:42:30,119 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 14:43:24] 2025-10-10 12:42:30,119 | INFO     | ***************************************
[2025-10-10 14:43:24] 2025-10-10 12:42:30,119 | INFO     | 
[2025-10-10 14:43:24] 2025-10-10 12:42:30,120 | INFO     | architecture information:
[2025-10-10 14:43:24] 2025-10-10 12:42:30,120 | INFO     | executing command: cat /etc/os-release
[2025-10-10 14:43:24] 2025-10-10 12:42:30,129 | INFO     | cat /etc/os-release:
[2025-10-10 14:43:24] NAME="CentOS Linux"
[2025-10-10 14:43:24] VERSION="7 (Core)"
[2025-10-10 14:43:24] ID="centos"
[2025-10-10 14:43:24] ID_LIKE="rhel fedora"
[2025-10-10 14:43:24] VERSION_ID="7"
[2025-10-10 14:43:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 14:43:24] ANSI_COLOR="0;31"
[2025-10-10 14:43:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 14:43:24] HOME_URL="https://www.centos.org/"
[2025-10-10 14:43:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 14:43:24] 
[2025-10-10 14:43:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 14:43:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 14:43:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 14:43:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 14:43:24] 
[2025-10-10 14:43:24] 2025-10-10 12:42:30,129 | INFO     | ***************************************
[2025-10-10 14:43:24] 2025-10-10 12:42:30,632 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-10 14:43:24] 2025-10-10 12:42:30,644 | INFO     | sufficient remaining disk space (825741017088 B)
[2025-10-10 14:43:24] 2025-10-10 12:42:30,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 14:43:24] 2025-10-10 12:42:30,645 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 14:43:24] 2025-10-10 12:42:30,645 | INFO     | update_server=False
[2025-10-10 14:43:24] 2025-10-10 12:42:30,645 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 14:43:24] 2025-10-10 12:42:30,645 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 14:43:24] 2025-10-10 12:42:30,685 | INFO     | all job control threads have been joined
[2025-10-10 14:43:24] 2025-10-10 12:42:30,882 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 14:43:24] 2025-10-10 12:42:30,883 | INFO     | aborting loop
[2025-10-10 14:43:24] 2025-10-10 12:42:30,928 | INFO     | all data control threads have been joined
[2025-10-10 14:43:24] 2025-10-10 12:42:31,647 | INFO     | all payload control threads have been joined
[2025-10-10 14:43:24] 2025-10-10 12:42:31,650 | INFO     | [job] retrieve thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:31,651 | INFO     | [job] queue monitor thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:31,690 | INFO     | [job] control thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:31,854 | INFO     | [data] copytool_in thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:31,888 | INFO     | [job] job monitor thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:31,934 | INFO     | [data] control thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:32,118 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 14:43:24] 2025-10-10 12:42:32,156 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 14:43:24] 2025-10-10 12:42:32,269 | INFO     | [payload] failed_post thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:32,605 | INFO     | [job] validate thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:32,616 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:32,653 | INFO     | [payload] control thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:32,703 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:32,860 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:32,872 | INFO     | [payload] validate_post thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:33,087 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:34,123 | INFO     | [data] copytool_out thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:42:36,162 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 14:43:24] 2025-10-10 12:43:00,177 | INFO     | PID=4083644 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 14:43:24] 2025-10-10 12:43:00,178 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 14:43:24] 2025-10-10 12:43:00,178 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 14:43:24] 2025-10-10 12:43:00,178 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 14:43:24] 2025-10-10 12:43:18,416 | INFO     | [monitor] cgroup control has ended
[2025-10-10 14:43:24] 2025-10-10 12:43:19,433 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139913263515456)>', '<ExcThread(monitor, started 139912569411328)>']
[2025-10-10 14:43:24] 2025-10-10 12:43:20,276 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 14:43:24] 2025-10-10 12:43:20,277 | INFO     | [monitor] control thread has ended
[2025-10-10 14:43:24] 2025-10-10 12:43:24,458 | INFO     | all workflow threads have been joined
[2025-10-10 14:43:24] 2025-10-10 12:43:24,458 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 14:43:24] 2025-10-10 12:43:24,458 | INFO     | traces error code: 0
[2025-10-10 14:43:24] 2025-10-10 12:43:24,458 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 14:43:24] 2025-10-10 12:43:24,543 [wrapper] ==== pilot stdout END ====
[2025-10-10 14:43:24] 2025-10-10 12:43:24,546 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 14:43:24] 2025-10-10 12:43:24,548 [wrapper] pilotpid: 4083644
[2025-10-10 14:43:24] 2025-10-10 12:43:24,550 [wrapper] Pilot exit status: 0
[2025-10-10 14:43:24] 2025-10-10 12:43:24,558 [wrapper] pandaids: 6837337860
[2025-10-10 14:43:24] 2025-10-10 12:43:24,582 [wrapper] cleanup supervisor_pilot 4100432 4083645
[2025-10-10 14:43:24] 2025-10-10 12:43:24,584 [wrapper] Test setup, not cleaning
[2025-10-10 14:43:24] 2025-10-10 12:43:24,586 [wrapper] apfmon messages muted
[2025-10-10 14:43:24] 2025-10-10 12:43:24,588 [wrapper] ==== wrapper stdout END ====
[2025-10-10 14:43:24] 2025-10-10 12:43:24,590 [wrapper] ==== wrapper stderr END ====
[2025-10-10 14:43:24]  *** Error codes and diagnostics ***
[2025-10-10 14:43:24]     "exeErrorCode": 0,
[2025-10-10 14:43:24]     "exeErrorDiag": "",
[2025-10-10 14:43:24]     "pilotErrorCode": 0,
[2025-10-10 14:43:24]     "pilotErrorDiag": "",
[2025-10-10 14:43:24]  *** Listing of results directory ***
[2025-10-10 14:43:24] total 417976
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc    557409 Oct  9 14:21 pilot3.tar.gz
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc      5112 Oct  9 14:29 queuedata.json
[2025-10-10 14:43:24] -rwx------ 1 boinc boinc     36292 Oct  9 14:29 runpilot2-wrapper.sh
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc       100 Oct 10 13:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 14:43:24] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 13:59 run_atlas
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc       105 Oct 10 13:59 job.xml
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc      6532 Oct 10 13:59 init_data.xml
[2025-10-10 14:43:24] -rw-r--r-- 2 boinc boinc 221456609 Oct 10 13:59 EVNT.46676267._000720.pool.root.1
[2025-10-10 14:43:24] -rw-r--r-- 2 boinc boinc     15120 Oct 10 13:59 start_atlas.sh
[2025-10-10 14:43:24] drwxrwx--x 2 boinc boinc        68 Oct 10 13:59 shared
[2025-10-10 14:43:24] -rw-r--r-- 2 boinc boinc    569679 Oct 10 13:59 input.tar.gz
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc         0 Oct 10 13:59 boinc_lockfile
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc      2549 Oct 10 13:59 pandaJob.out
[2025-10-10 14:43:24] -rw------- 1 boinc boinc    975517 Oct 10 13:59 agis_schedconf.cvmfs.json
[2025-10-10 14:43:24] -rw------- 1 boinc boinc   1560580 Oct 10 13:59 agis_ddmendpoints.agis.ALL.json
[2025-10-10 14:43:24] drwx------ 5 boinc boinc      4096 Oct 10 13:59 pilot3
[2025-10-10 14:43:24] -rw------- 1 boinc boinc 201161259 Oct 10 14:41 HITS.46676269._017382.pool.root.1
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc       529 Oct 10 14:42 boinc_task_state.xml
[2025-10-10 14:43:24] -rw------- 1 boinc boinc      1019 Oct 10 14:42 memory_monitor_summary.json
[2025-10-10 14:43:24] -rw------- 1 boinc boinc    345654 Oct 10 14:42 log.46676269._017382.job.log.tgz.1
[2025-10-10 14:43:24] -rw------- 1 boinc boinc      7801 Oct 10 14:42 heartbeat.json
[2025-10-10 14:43:24] -rw------- 1 boinc boinc        95 Oct 10 14:43 pilot_heartbeat.json
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc      8192 Oct 10 14:43 boinc_mmap_file
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc        27 Oct 10 14:43 wrapper_checkpoint.txt
[2025-10-10 14:43:24] -rw------- 1 boinc boinc      4749 Oct 10 14:43 pilotlog.txt
[2025-10-10 14:43:24] -rw------- 1 boinc boinc    402811 Oct 10 14:43 log.46676269._017382.job.log.1
[2025-10-10 14:43:24] -rw------- 1 boinc boinc       357 Oct 10 14:43 output.list
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc       620 Oct 10 14:43 runtime_log
[2025-10-10 14:43:24] -rw------- 1 boinc boinc    768000 Oct 10 14:43 result.tar.gz
[2025-10-10 14:43:24] -rw------- 1 boinc boinc       653 Oct 10 14:43 zLvLDmRx4Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFrZNDmW8b4Nm.diag
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc      8727 Oct 10 14:43 runtime_log.err
[2025-10-10 14:43:24] -rw-r--r-- 1 boinc boinc     22084 Oct 10 14:43 stderr.txt
[2025-10-10 14:43:24] HITS file was successfully produced:
[2025-10-10 14:43:24] -rw------- 1 boinc boinc 201161259 Oct 10 14:41 shared/HITS.pool.root.1
[2025-10-10 14:43:24]  *** Contents of shared directory: ***
[2025-10-10 14:43:24] total 414044
[2025-10-10 14:43:24] -rw-r--r-- 2 boinc boinc 221456609 Oct 10 13:59 ATLAS.root_0
[2025-10-10 14:43:24] -rw-r--r-- 2 boinc boinc     15120 Oct 10 13:59 start_atlas.sh
[2025-10-10 14:43:24] -rw-r--r-- 2 boinc boinc    569679 Oct 10 13:59 input.tar.gz
[2025-10-10 14:43:24] -rw------- 1 boinc boinc 201161259 Oct 10 14:41 HITS.pool.root.1
[2025-10-10 14:43:24] -rw------- 1 boinc boinc    768000 Oct 10 14:43 result.tar.gz
14:43:26 (4079818): run_atlas exited; CPU time 28117.837139
14:43:26 (4079818): called boinc_finish(0)

</stderr_txt>
]]>

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