Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:41:39 (2186360): wrapper (7.7.26015): starting
10:41:39 (2186360): wrapper: running run_atlas (--nthreads 3)
[2025-10-10 10:41:39] Arguments: --nthreads 3
[2025-10-10 10:41:39] Threads: 3
[2025-10-10 10:41:39] Checking for CVMFS
[2025-10-10 10:41:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 10:41:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 10:41:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 10:41:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 10:41:39] 2.9.2.0 2159162 91 49880 151539 0 57 27200242 36864000 0 130560 0 70987 99.997 2598 735 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-10 10:41:39] CVMFS is ok
[2025-10-10 10:41:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 10:41:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 10:41:39] Further information can be found at the LHC@home message board.
[2025-10-10 10:41:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 10:41:39] Checking for apptainer binary...
[2025-10-10 10:41:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 10:41:39] Running /usr/bin/apptainer --version
[2025-10-10 10:41:39] apptainer version 1.4.1-1.1
[2025-10-10 10:41:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 10:41:39] thA389a
[2025-10-10 10:41:39] apptainer works
[2025-10-10 10:41:39] Set ATHENA_PROC_NUMBER=3
[2025-10-10 10:41:39] Set ATHENA_CORE_NUMBER=3
[2025-10-10 10:41:39] Starting ATLAS job with PandaID=6837350381
[2025-10-10 10:41:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 12:16:03]  *** The last 200 lines of the pilot log: ***
[2025-10-10 12:16:03] 2025-10-10 10:15:22,666 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 12:16:03] 2025-10-10 10:15:22,666 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 12:16:03] 2025-10-10 10:15:22,666 | INFO     | job 6837350381 has completed (purged errors)
[2025-10-10 12:16:03] 2025-10-10 10:15:22,666 | INFO     | overall cleanup function is called
[2025-10-10 12:16:03] 2025-10-10 10:15:23,673 | INFO     | --- collectZombieJob: --- 10, [2196543]
[2025-10-10 12:16:03] 2025-10-10 10:15:23,673 | INFO     | zombie collector waiting for pid 2196543
[2025-10-10 12:16:03] 2025-10-10 10:15:23,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 12:16:03] 2025-10-10 10:15:23,673 | INFO     | collected zombie processes
[2025-10-10 12:16:03] 2025-10-10 10:15:23,674 | INFO     | will attempt to kill all subprocesses of pid=2196543
[2025-10-10 12:16:03] 2025-10-10 10:15:23,715 | INFO     | process IDs to be killed: [2196543] (in reverse order)
[2025-10-10 12:16:03] 2025-10-10 10:15:23,740 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 12:16:03] 2025-10-10 10:15:23,740 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 12:16:03] 2025-10-10 10:15:23,741 | INFO     | did not find any defunct processes belonging to 2196543
[2025-10-10 12:16:03] 2025-10-10 10:15:23,742 | INFO     | did not find any defunct processes belonging to 2196543
[2025-10-10 12:16:03] 2025-10-10 10:15:23,742 | INFO     | ready for new job
[2025-10-10 12:16:03] 2025-10-10 10:15:23,742 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 12:16:03] 2025-10-10 10:15:23,743 | INFO     | ***************************************
[2025-10-10 12:16:03] 2025-10-10 10:15:23,743 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 12:16:03] 2025-10-10 10:15:23,743 | INFO     | ***************************************
[2025-10-10 12:16:03] 2025-10-10 10:15:23,743 | INFO     | 
[2025-10-10 12:16:03] 2025-10-10 10:15:23,743 | INFO     | architecture information:
[2025-10-10 12:16:03] 2025-10-10 10:15:23,743 | INFO     | executing command: cat /etc/os-release
[2025-10-10 12:16:03] 2025-10-10 10:15:23,753 | INFO     | cat /etc/os-release:
[2025-10-10 12:16:03] NAME="CentOS Linux"
[2025-10-10 12:16:03] VERSION="7 (Core)"
[2025-10-10 12:16:03] ID="centos"
[2025-10-10 12:16:03] ID_LIKE="rhel fedora"
[2025-10-10 12:16:03] VERSION_ID="7"
[2025-10-10 12:16:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 12:16:03] ANSI_COLOR="0;31"
[2025-10-10 12:16:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 12:16:03] HOME_URL="https://www.centos.org/"
[2025-10-10 12:16:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 12:16:03] 
[2025-10-10 12:16:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 12:16:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 12:16:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 12:16:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 12:16:03] 
[2025-10-10 12:16:03] 2025-10-10 10:15:23,753 | INFO     | ***************************************
[2025-10-10 12:16:03] 2025-10-10 10:15:24,256 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-10 12:16:03] 2025-10-10 10:15:24,269 | INFO     | sufficient remaining disk space (232801697792 B)
[2025-10-10 12:16:03] 2025-10-10 10:15:24,269 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 12:16:03] 2025-10-10 10:15:24,269 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 12:16:03] 2025-10-10 10:15:24,269 | INFO     | update_server=False
[2025-10-10 12:16:03] 2025-10-10 10:15:24,269 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 12:16:03] 2025-10-10 10:15:24,269 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 12:16:03] 2025-10-10 10:15:24,431 | INFO     | all payload control threads have been joined
[2025-10-10 12:16:03] 2025-10-10 10:15:24,544 | INFO     | all data control threads have been joined
[2025-10-10 12:16:03] 2025-10-10 10:15:24,621 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:16:03] 2025-10-10 10:15:24,621 | INFO     | aborting loop
[2025-10-10 12:16:03] 2025-10-10 10:15:24,688 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 12:16:03] 2025-10-10 10:15:25,236 | INFO     | all job control threads have been joined
[2025-10-10 12:16:03] 2025-10-10 10:15:25,275 | INFO     | [job] retrieve thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:25,437 | INFO     | [payload] control thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:25,550 | INFO     | [data] control thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:25,627 | INFO     | [job] job monitor thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:26,031 | INFO     | [payload] validate_post thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:26,089 | INFO     | [data] copytool_in thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:26,242 | INFO     | [job] control thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:26,275 | INFO     | [data] copytool_out thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:26,446 | INFO     | [job] validate thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:26,513 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:26,602 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:26,657 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:26,836 | INFO     | [payload] failed_post thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:27,237 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:16:03] 2025-10-10 10:15:28,243 | INFO     | [job] queue monitor thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:28,695 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:35,278 | INFO     | job.realtimelogging is not enabled
[2025-10-10 12:16:03] 2025-10-10 10:15:36,279 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 12:16:03] 2025-10-10 10:15:54,917 | INFO     | PID=2190099 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 12:16:03] 2025-10-10 10:15:54,917 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 12:16:03] 2025-10-10 10:15:54,918 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 12:16:03] 2025-10-10 10:15:54,918 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 12:16:03] 2025-10-10 10:15:57,880 | INFO     | [monitor] cgroup control has ended
[2025-10-10 12:16:03] 2025-10-10 10:15:58,012 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140100386711360)>', '<ExcThread(monitor, started 140099601815296)>']
[2025-10-10 12:16:03] 2025-10-10 10:15:58,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 12:16:03] 2025-10-10 10:15:58,939 | INFO     | [monitor] control thread has ended
[2025-10-10 12:16:03] 2025-10-10 10:16:03,038 | INFO     | all workflow threads have been joined
[2025-10-10 12:16:03] 2025-10-10 10:16:03,039 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 12:16:03] 2025-10-10 10:16:03,039 | INFO     | traces error code: 0
[2025-10-10 12:16:03] 2025-10-10 10:16:03,040 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 12:16:03] 2025-10-10 10:16:03,087 [wrapper] ==== pilot stdout END ====
[2025-10-10 12:16:03] 2025-10-10 10:16:03,090 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 12:16:03] 2025-10-10 10:16:03,092 [wrapper] pilotpid: 2190099
[2025-10-10 12:16:03] 2025-10-10 10:16:03,095 [wrapper] Pilot exit status: 0
[2025-10-10 12:16:03] 2025-10-10 10:16:03,103 [wrapper] pandaids: 6837350381
[2025-10-10 12:16:03] 2025-10-10 10:16:03,121 [wrapper] cleanup supervisor_pilot 2208855 2190100
[2025-10-10 12:16:03] 2025-10-10 10:16:03,124 [wrapper] Test setup, not cleaning
[2025-10-10 12:16:03] 2025-10-10 10:16:03,126 [wrapper] apfmon messages muted
[2025-10-10 12:16:03] 2025-10-10 10:16:03,129 [wrapper] ==== wrapper stdout END ====
[2025-10-10 12:16:03] 2025-10-10 10:16:03,131 [wrapper] ==== wrapper stderr END ====
[2025-10-10 12:16:03]  *** Error codes and diagnostics ***
[2025-10-10 12:16:03]     "exeErrorCode": 0,
[2025-10-10 12:16:03]     "exeErrorDiag": "",
[2025-10-10 12:16:03]     "pilotErrorCode": 0,
[2025-10-10 12:16:03]     "pilotErrorDiag": "",
[2025-10-10 12:16:03]  *** Listing of results directory ***
[2025-10-10 12:16:03] total 408900
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc    557409 Oct  9 17:29 pilot3.tar.gz
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc      5112 Oct  9 17:45 queuedata.json
[2025-10-10 12:16:03] -rwx------ 1 boinc boinc     36292 Oct  9 17:46 runpilot2-wrapper.sh
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc       100 Oct 10 10:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 12:16:03] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 10:41 run_atlas
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc       105 Oct 10 10:41 job.xml
[2025-10-10 12:16:03] -rw-r--r-- 2 boinc boinc 219143961 Oct 10 10:41 EVNT.46676267._000613.pool.root.1
[2025-10-10 12:16:03] -rw-r--r-- 2 boinc boinc    569681 Oct 10 10:41 input.tar.gz
[2025-10-10 12:16:03] -rw-r--r-- 2 boinc boinc     15120 Oct 10 10:41 start_atlas.sh
[2025-10-10 12:16:03] drwxrwx--x 2 boinc boinc      4096 Oct 10 10:41 shared
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc         0 Oct 10 10:41 boinc_setup_complete
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc      6198 Oct 10 10:41 init_data.xml
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc         0 Oct 10 10:41 boinc_lockfile
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc      2548 Oct 10 10:41 pandaJob.out
[2025-10-10 12:16:03] -rw------- 1 boinc boinc    975462 Oct 10 10:41 agis_schedconf.cvmfs.json
[2025-10-10 12:16:03] -rw------- 1 boinc boinc   1560580 Oct 10 10:41 agis_ddmendpoints.agis.ALL.json
[2025-10-10 12:16:03] drwx------ 5 boinc boinc      4096 Oct 10 10:41 pilot3
[2025-10-10 12:16:03] -rw------- 1 boinc boinc 193500498 Oct 10 12:14 HITS.46676269._021748.pool.root.1
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc       529 Oct 10 12:15 boinc_task_state.xml
[2025-10-10 12:16:03] -rw------- 1 boinc boinc      1024 Oct 10 12:15 memory_monitor_summary.json
[2025-10-10 12:16:03] -rw------- 1 boinc boinc    272363 Oct 10 12:15 log.46676269._021748.job.log.tgz.1
[2025-10-10 12:16:03] -rw------- 1 boinc boinc        95 Oct 10 12:15 pilot_heartbeat.json
[2025-10-10 12:16:03] -rw------- 1 boinc boinc      7767 Oct 10 12:15 heartbeat.json
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc      8192 Oct 10 12:15 boinc_mmap_file
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc        27 Oct 10 12:15 wrapper_checkpoint.txt
[2025-10-10 12:16:03] -rw------- 1 boinc boinc      4824 Oct 10 12:16 pilotlog.txt
[2025-10-10 12:16:03] -rw------- 1 boinc boinc    818879 Oct 10 12:16 log.46676269._021748.job.log.1
[2025-10-10 12:16:03] -rw------- 1 boinc boinc       357 Oct 10 12:16 output.list
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc       620 Oct 10 12:16 runtime_log
[2025-10-10 12:16:03] -rw------- 1 boinc boinc   1105920 Oct 10 12:16 result.tar.gz
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc      8782 Oct 10 12:16 runtime_log.err
[2025-10-10 12:16:03] -rw------- 1 boinc boinc       659 Oct 10 12:16 6sFKDmu17Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTdaNDm3xrqym.diag
[2025-10-10 12:16:03] -rw-r--r-- 1 boinc boinc     11104 Oct 10 12:16 stderr.txt
[2025-10-10 12:16:03] HITS file was successfully produced:
[2025-10-10 12:16:03] -rw------- 1 boinc boinc 193500498 Oct 10 12:14 shared/HITS.pool.root.1
[2025-10-10 12:16:03]  *** Contents of shared directory: ***
[2025-10-10 12:16:03] total 404640
[2025-10-10 12:16:03] -rw-r--r-- 2 boinc boinc 219143961 Oct 10 10:41 ATLAS.root_0
[2025-10-10 12:16:03] -rw-r--r-- 2 boinc boinc    569681 Oct 10 10:41 input.tar.gz
[2025-10-10 12:16:03] -rw-r--r-- 2 boinc boinc     15120 Oct 10 10:41 start_atlas.sh
[2025-10-10 12:16:03] -rw------- 1 boinc boinc 193500498 Oct 10 12:14 HITS.pool.root.1
[2025-10-10 12:16:03] -rw------- 1 boinc boinc   1105920 Oct 10 12:16 result.tar.gz
12:16:04 (2186360): run_atlas exited; CPU time 16140.177689
12:16:04 (2186360): called boinc_finish(0)

</stderr_txt>
]]>

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