Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:05:46 (125232): wrapper (7.7.26015): starting
10:05:46 (125232): wrapper: running run_atlas (--nthreads 6)
[2025-10-10 10:05:46] Arguments: --nthreads 6
[2025-10-10 10:05:46] Threads: 6
[2025-10-10 10:05:46] Checking for CVMFS
[2025-10-10 10:05:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 10:05:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 10:05:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 10:05:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 10:05:47] 2.11.5.0 3651556 736 63992 151528 3 188 38118952 52428801 1858 130560 0 2101811 99.997 22746 13 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-10 10:05:47] CVMFS is ok
[2025-10-10 10:05:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 10:05:47] Checking for apptainer binary...
[2025-10-10 10:05:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 10:05:47] Running /usr/bin/apptainer --version
[2025-10-10 10:05:47] apptainer version 1.3.5-1.el9
[2025-10-10 10:05:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 10:05:47] testio008
[2025-10-10 10:05:47] apptainer works
[2025-10-10 10:05:47] Set ATHENA_PROC_NUMBER=6
[2025-10-10 10:05:47] Set ATHENA_CORE_NUMBER=6
[2025-10-10 10:05:47] Starting ATLAS job with PandaID=6837344764
[2025-10-10 10:05:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 11:17:08]  *** The last 200 lines of the pilot log: ***
[2025-10-10 11:17:08] 2025-10-10 02:16:08,130 | INFO     | monitor loop #334: job 0:6837344764 is in state 'finished'
[2025-10-10 11:17:08] 2025-10-10 02:16:08,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 11:17:08] 2025-10-10 02:16:08,543 | INFO     | time since job start (4211s) is within the limit (172800.0s)
[2025-10-10 11:17:08] 2025-10-10 02:16:10,548 | INFO     | time since job start (4213s) is within the limit (172800.0s)
[2025-10-10 11:17:08] 2025-10-10 02:16:10,633 | INFO     | monitor loop #335: job 0:6837344764 is in state 'finished'
[2025-10-10 11:17:08] 2025-10-10 02:16:10,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 11:17:08] 2025-10-10 02:16:11,601 | INFO     | PID=129010 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 11:17:08] 2025-10-10 02:16:11,601 | INFO     | .. there are 3 such processes running
[2025-10-10 11:17:08] 2025-10-10 02:16:12,602 | INFO     | time since job start (4215s) is within the limit (172800.0s)
[2025-10-10 11:17:08] 2025-10-10 02:16:13,136 | INFO     | monitor loop #336: job 0:6837344764 is in state 'finished'
[2025-10-10 11:17:08] 2025-10-10 02:16:13,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 11:17:08] 2025-10-10 02:16:14,607 | INFO     | time since job start (4217s) is within the limit (172800.0s)
[2025-10-10 11:17:08] 2025-10-10 02:16:15,639 | INFO     | monitor loop #337: job 0:6837344764 is in state 'finished'
[2025-10-10 11:17:08] 2025-10-10 02:16:15,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 11:17:08] 2025-10-10 02:16:16,612 | INFO     | time since job start (4219s) is within the limit (172800.0s)
[2025-10-10 11:17:08] 2025-10-10 02:16:18,141 | INFO     | monitor loop #338: job 0:6837344764 is in state 'finished'
[2025-10-10 11:17:08] 2025-10-10 02:16:18,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 11:17:08] 2025-10-10 02:16:18,617 | INFO     | time since job start (4221s) is within the limit (172800.0s)
[2025-10-10 11:17:08] 2025-10-10 02:16:20,622 | INFO     | time since job start (4223s) is within the limit (172800.0s)
[2025-10-10 11:17:08] 2025-10-10 02:16:20,644 | INFO     | monitor loop #339: job 0:6837344764 is in state 'finished'
[2025-10-10 11:17:08] 2025-10-10 02:16:20,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 11:17:08] 2025-10-10 02:16:22,627 | INFO     | time since job start (4225s) is within the limit (172800.0s)
[2025-10-10 11:17:08] 2025-10-10 02:16:23,147 | INFO     | monitor loop #340: job 0:6837344764 is in state 'finished'
[2025-10-10 11:17:08] 2025-10-10 02:16:23,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 11:17:08] 2025-10-10 02:16:24,632 | INFO     | time since job start (4227s) is within the limit (172800.0s)
[2025-10-10 11:17:08] 2025-10-10 02:16:25,650 | INFO     | monitor loop #341: job 0:6837344764 is in state 'finished'
[2025-10-10 11:17:08] 2025-10-10 02:16:25,651 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 11:17:08] 2025-10-10 02:16:26,637 | INFO     | time since job start (4229s) is within the limit (172800.0s)
[2025-10-10 11:17:08] 2025-10-10 02:16:28,153 | INFO     | monitor loop #342: job 0:6837344764 is in state 'finished'
[2025-10-10 11:17:08] 2025-10-10 02:16:28,154 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 11:17:08] 2025-10-10 02:16:28,641 | INFO     | time since job start (4231s) is within the limit (172800.0s)
[2025-10-10 11:17:08] 2025-10-10 02:16:30,647 | INFO     | time since job start (4233s) is within the limit (172800.0s)
[2025-10-10 11:17:08] 2025-10-10 02:16:30,656 | INFO     | monitor loop #343: job 0:6837344764 is in state 'finished'
[2025-10-10 11:17:08] 2025-10-10 02:16:30,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 11:17:08] 2025-10-10 02:16:32,020 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 11:17:08] 2025-10-10 02:16:32,021 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4120.0008
[2025-10-10 11:17:08] 2025-10-10 02:16:32,023 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6837344764/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 11:17:08] 2025-10-10 02:16:32,023 | INFO     | extracted standard info from prmon json
[2025-10-10 11:17:08] 2025-10-10 02:16:32,023 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 11:17:08] 2025-10-10 02:16:32,023 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 11:17:08] 2025-10-10 02:16:32,024 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 11:17:08] 2025-10-10 02:16:32,024 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 11:17:08] 2025-10-10 02:16:32,024 | INFO     | fitting pss+swap vs Time
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | sum of square deviations: 73882315.5
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | sum of deviations: -413598452.5
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | mean x: 1760060539.5
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | mean y: 2442222.3387096776
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | -- intersect: 9855386198.404472
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | intersect: 9855386198.404472
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | chi2: 0.016818191490049688
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | -- intersect: 9855386198.404472
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | current memory leak: -5.60 B/s (using 62 data points, chi2=0.02)
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | could have reported an average CPU frequency of 4146 MHz (6 samples)
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | ..............................
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | . Timing measurements:
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | . get job = 0 s
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | . initial setup = 5 s
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | . payload setup = 2 s
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | . stage-in = 0 s
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | . payload execution = 4152 s
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | . stage-out = 0 s
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | . log creation = 0 s
[2025-10-10 11:17:08] 2025-10-10 02:16:32,025 | INFO     | ..............................
[2025-10-10 11:17:08] 2025-10-10 02:16:32,440 | INFO     | 
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | job summary report
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | --------------------------------------------------
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | PanDA job id: 6837344764
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | task id: 46676269
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | errors: (none)
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | pilot state: finished 
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | transexitcode: 0
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | exeerrorcode: 0
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | exeerrordiag: 
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | exitcode: 0
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | exitmsg: OK
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | cpuconsumptiontime: 22248 s
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | nevents: 400
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | neventsw: 0
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | pid: 135720
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | pgrp: 135720
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | corecount: 6
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | event service: False
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | sizes: {0: 2348855, 2: 2349117, 11: 2349145, 4158: 2384125, 4161: 2384125, 4222: 2384319}
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | --------------------------------------------------
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | 
[2025-10-10 11:17:08] 2025-10-10 02:16:32,441 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 11:17:08] 2025-10-10 02:16:32,449 | INFO     | job 6837344764 has completed (purged errors)
[2025-10-10 11:17:08] 2025-10-10 02:16:32,450 | INFO     | overall cleanup function is called
[2025-10-10 11:17:08] 2025-10-10 02:16:33,455 | INFO     | --- collectZombieJob: --- 10, [135720]
[2025-10-10 11:17:08] 2025-10-10 02:16:33,456 | INFO     | zombie collector waiting for pid 135720
[2025-10-10 11:17:08] 2025-10-10 02:16:33,456 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 11:17:08] 2025-10-10 02:16:33,456 | INFO     | collected zombie processes
[2025-10-10 11:17:08] 2025-10-10 02:16:33,456 | INFO     | will attempt to kill all subprocesses of pid=135720
[2025-10-10 11:17:08] 2025-10-10 02:16:33,491 | INFO     | process IDs to be killed: [135720] (in reverse order)
[2025-10-10 11:17:08] 2025-10-10 02:16:33,509 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 11:17:08] 2025-10-10 02:16:33,509 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 11:17:08] 2025-10-10 02:16:33,511 | INFO     | did not find any defunct processes belonging to 135720
[2025-10-10 11:17:08] 2025-10-10 02:16:33,512 | INFO     | did not find any defunct processes belonging to 135720
[2025-10-10 11:17:08] 2025-10-10 02:16:33,512 | INFO     | ready for new job
[2025-10-10 11:17:08] 2025-10-10 02:16:33,512 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 11:17:08] 2025-10-10 02:16:33,513 | INFO     | ***************************************
[2025-10-10 11:17:08] 2025-10-10 02:16:33,513 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 11:17:08] 2025-10-10 02:16:33,513 | INFO     | ***************************************
[2025-10-10 11:17:08] 2025-10-10 02:16:33,513 | INFO     | 
[2025-10-10 11:17:08] 2025-10-10 02:16:33,514 | INFO     | architecture information:
[2025-10-10 11:17:08] 2025-10-10 02:16:33,514 | INFO     | executing command: cat /etc/os-release
[2025-10-10 11:17:08] 2025-10-10 02:16:33,520 | INFO     | cat /etc/os-release:
[2025-10-10 11:17:08] NAME="CentOS Linux"
[2025-10-10 11:17:08] VERSION="7 (Core)"
[2025-10-10 11:17:08] ID="centos"
[2025-10-10 11:17:08] ID_LIKE="rhel fedora"
[2025-10-10 11:17:08] VERSION_ID="7"
[2025-10-10 11:17:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 11:17:08] ANSI_COLOR="0;31"
[2025-10-10 11:17:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 11:17:08] HOME_URL="https://www.centos.org/"
[2025-10-10 11:17:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 11:17:08] 
[2025-10-10 11:17:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 11:17:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 11:17:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 11:17:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 11:17:08] 
[2025-10-10 11:17:08] 2025-10-10 02:16:33,520 | INFO     | ***************************************
[2025-10-10 11:17:08] 2025-10-10 02:16:34,022 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-10 11:17:08] 2025-10-10 02:16:34,029 | INFO     | sufficient remaining disk space (279587061760 B)
[2025-10-10 11:17:08] 2025-10-10 02:16:34,029 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 11:17:08] 2025-10-10 02:16:34,030 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 11:17:08] 2025-10-10 02:16:34,030 | INFO     | update_server=False
[2025-10-10 11:17:08] 2025-10-10 02:16:34,030 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 11:17:08] 2025-10-10 02:16:34,030 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 11:17:08] 2025-10-10 02:16:34,039 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 11:17:08] 2025-10-10 02:16:34,167 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 11:17:08] 2025-10-10 02:16:34,168 | INFO     | aborting loop
[2025-10-10 11:17:08] 2025-10-10 02:16:34,773 | INFO     | all data control threads have been joined
[2025-10-10 11:17:08] 2025-10-10 02:16:34,987 | INFO     | all payload control threads have been joined
[2025-10-10 11:17:08] 2025-10-10 02:16:35,035 | INFO     | [job] queue monitor thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:35,035 | INFO     | [job] retrieve thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:35,121 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:35,176 | INFO     | [job] job monitor thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:35,508 | INFO     | all job control threads have been joined
[2025-10-10 11:17:08] 2025-10-10 02:16:35,615 | INFO     | [data] copytool_in thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:35,640 | INFO     | [payload] failed_post thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:35,778 | INFO     | [data] control thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:35,830 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 11:17:08] 2025-10-10 02:16:35,992 | INFO     | [payload] control thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:36,044 | INFO     | [data] copytool_out thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:36,370 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:36,399 | INFO     | [payload] validate_post thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:36,481 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:36,512 | INFO     | [job] control thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:36,522 | INFO     | [job] validate thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:39,835 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:16:44,723 | INFO     | job.realtimelogging is not enabled
[2025-10-10 11:17:08] 2025-10-10 02:16:45,728 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 11:17:08] 2025-10-10 02:17:02,668 | INFO     | 4240s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-10 11:17:08] 2025-10-10 02:17:03,549 | INFO     | [monitor] cgroup control has ended
[2025-10-10 11:17:08] 2025-10-10 02:17:03,706 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140228570404672)>', '<ExcThread(monitor, started 140227721029376)>']
[2025-10-10 11:17:08] 2025-10-10 02:17:03,719 | INFO     | PID=129010 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 11:17:08] 2025-10-10 02:17:03,719 | INFO     | .. there are 3 such processes running
[2025-10-10 11:17:08] 2025-10-10 02:17:03,719 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 11:17:08] 2025-10-10 02:17:03,719 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 11:17:08] 2025-10-10 02:17:03,719 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 11:17:08] 2025-10-10 02:17:03,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 11:17:08] 2025-10-10 02:17:03,719 | INFO     | [monitor] control thread has ended
[2025-10-10 11:17:08] 2025-10-10 02:17:08,731 | INFO     | all workflow threads have been joined
[2025-10-10 11:17:08] 2025-10-10 02:17:08,732 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 11:17:08] 2025-10-10 02:17:08,732 | INFO     | traces error code: 0
[2025-10-10 11:17:08] 2025-10-10 02:17:08,732 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 11:17:08] 2025-10-10 02:17:08,792 [wrapper] ==== pilot stdout END ====
[2025-10-10 11:17:08] 2025-10-10 02:17:08,793 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 11:17:08] 2025-10-10 02:17:08,794 [wrapper] pilotpid: 129010
[2025-10-10 11:17:08] 2025-10-10 02:17:08,795 [wrapper] Pilot exit status: 0
[2025-10-10 11:17:08] 2025-10-10 02:17:08,798 [wrapper] pandaids: 6837344764
[2025-10-10 11:17:08] 2025-10-10 02:17:08,809 [wrapper] cleanup supervisor_pilot  176524 129011
[2025-10-10 11:17:08] 2025-10-10 02:17:08,810 [wrapper] Test setup, not cleaning
[2025-10-10 11:17:08] 2025-10-10 02:17:08,811 [wrapper] apfmon messages muted
[2025-10-10 11:17:08] 2025-10-10 02:17:08,812 [wrapper] ==== wrapper stdout END ====
[2025-10-10 11:17:08] 2025-10-10 02:17:08,813 [wrapper] ==== wrapper stderr END ====
[2025-10-10 11:17:08]  *** Error codes and diagnostics ***
[2025-10-10 11:17:08]     "exeErrorCode": 0,
[2025-10-10 11:17:08]     "exeErrorDiag": "",
[2025-10-10 11:17:08]     "pilotErrorCode": 0,
[2025-10-10 11:17:08]     "pilotErrorDiag": "",
[2025-10-10 11:17:08]  *** Listing of results directory ***
[2025-10-10 11:17:08] total 411420
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc    557409 Oct  9 22:37 pilot3.tar.gz
[2025-10-10 11:17:08] -rwx------. 1 boinc boinc     36292 Oct  9 22:49 runpilot2-wrapper.sh
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc      5112 Oct  9 22:49 queuedata.json
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc       100 Oct 10 10:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 11:17:08] -rwxr-xr-x. 1 boinc boinc      7986 Oct 10 10:05 run_atlas
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc       105 Oct 10 10:05 job.xml
[2025-10-10 11:17:08] -rw-r--r--. 2 boinc boinc     15120 Oct 10 10:05 start_atlas.sh
[2025-10-10 11:17:08] drwxrwx--x. 2 boinc boinc        68 Oct 10 10:05 shared
[2025-10-10 11:17:08] -rw-r--r--. 2 boinc boinc    569680 Oct 10 10:05 input.tar.gz
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc      9509 Oct 10 10:05 init_data.xml
[2025-10-10 11:17:08] -rw-r--r--. 2 boinc boinc 220494688 Oct 10 10:05 EVNT.46676267._000797.pool.root.1
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc         0 Oct 10 10:05 boinc_lockfile
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc      2549 Oct 10 10:05 pandaJob.out
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc    975454 Oct 10 10:05 agis_schedconf.cvmfs.json
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc   1560580 Oct 10 10:05 agis_ddmendpoints.agis.ALL.json
[2025-10-10 11:17:08] drwx------. 5 boinc boinc      4096 Oct 10 10:05 pilot3
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc 195036291 Oct 10 11:15 HITS.46676269._019219.pool.root.1
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc       530 Oct 10 11:15 boinc_task_state.xml
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc      1021 Oct 10 11:15 memory_monitor_summary.json
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc    290903 Oct 10 11:15 log.46676269._019219.job.log.tgz.1
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc        95 Oct 10 11:16 pilot_heartbeat.json
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc      7761 Oct 10 11:16 heartbeat.json
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc      8192 Oct 10 11:16 boinc_mmap_file
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc        27 Oct 10 11:16 wrapper_checkpoint.txt
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc      5010 Oct 10 11:17 pilotlog.txt
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc    641329 Oct 10 11:17 log.46676269._019219.job.log.1
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc       357 Oct 10 11:17 output.list
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc       620 Oct 10 11:17 runtime_log
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc    952320 Oct 10 11:17 result.tar.gz
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc      8661 Oct 10 11:17 runtime_log.err
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc       642 Oct 10 11:17 9GCMDmfC6Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmQ2NMDmMYpuYm.diag
[2025-10-10 11:17:08] -rw-r--r--. 1 boinc boinc     21915 Oct 10 11:17 stderr.txt
[2025-10-10 11:17:08] HITS file was successfully produced:
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc 195036291 Oct 10 11:15 shared/HITS.pool.root.1
[2025-10-10 11:17:08]  *** Contents of shared directory: ***
[2025-10-10 11:17:08] total 407304
[2025-10-10 11:17:08] -rw-r--r--. 2 boinc boinc     15120 Oct 10 10:05 start_atlas.sh
[2025-10-10 11:17:08] -rw-r--r--. 2 boinc boinc    569680 Oct 10 10:05 input.tar.gz
[2025-10-10 11:17:08] -rw-r--r--. 2 boinc boinc 220494688 Oct 10 10:05 ATLAS.root_0
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc 195036291 Oct 10 11:15 HITS.pool.root.1
[2025-10-10 11:17:08] -rw-------. 1 boinc boinc    952320 Oct 10 11:17 result.tar.gz
11:17:10 (125232): run_atlas exited; CPU time 22275.413980
11:17:10 (125232): called boinc_finish(0)

</stderr_txt>
]]>

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