Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:21:37 (653375): wrapper (7.7.26015): starting
16:21:37 (653375): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 16:21:37] Arguments: --nthreads 8
[2025-10-09 16:21:37] Threads: 8
[2025-10-09 16:21:37] Checking for CVMFS
[2025-10-09 16:21:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 16:21:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 16:21:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 16:22:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 16:22:00] 2.13.2.0 5158 1833 125216 151522 1 317 34860116 40960001 23297 16776704 0 6027982 99.787 2042799 36095 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 16:22:00] CVMFS is ok
[2025-10-09 16:22:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 16:22:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 16:22:00] Further information can be found at the LHC@home message board.
[2025-10-09 16:22:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 16:22:00] Checking for apptainer binary...
[2025-10-09 16:22:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 16:22:00] Running /usr/bin/apptainer --version
[2025-10-09 16:22:00] apptainer version 1.4.3-1.el9
[2025-10-09 16:22:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 16:22:01] c-212-13.aglt2.org
[2025-10-09 16:22:01] apptainer works
[2025-10-09 16:22:01] Set ATHENA_PROC_NUMBER=8
[2025-10-09 16:22:01] Set ATHENA_CORE_NUMBER=8
[2025-10-09 16:22:01] Starting ATLAS job with PandaID=6837337207
[2025-10-09 16:22:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 19:02:56]  *** The last 200 lines of the pilot log: ***
[2025-10-09 19:02:57] 2025-10-09 23:02:18,744 | INFO     | time since job start (9545s) is within the limit (172800.0s)
[2025-10-09 19:02:57] 2025-10-09 23:02:20,413 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-09 19:02:57] 2025-10-09 23:02:20,438 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3201.8169270833337
[2025-10-09 19:02:57] 2025-10-09 23:02:20,466 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6837337207/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 19:02:57] 2025-10-09 23:02:20,467 | INFO     | extracted standard info from prmon json
[2025-10-09 19:02:57] 2025-10-09 23:02:20,467 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 19:02:57] 2025-10-09 23:02:20,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 19:02:57] 2025-10-09 23:02:20,467 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 19:02:57] 2025-10-09 23:02:20,467 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 19:02:57] 2025-10-09 23:02:20,469 | INFO     | fitting pss+swap vs Time
[2025-10-09 19:02:57] 2025-10-09 23:02:20,470 | INFO     | sum of square deviations: 1177177032.480773
[2025-10-09 19:02:57] 2025-10-09 23:02:20,470 | INFO     | sum of deviations: -25251737414.557697
[2025-10-09 19:02:57] 2025-10-09 23:02:20,470 | INFO     | mean x: 1760046162.5576923
[2025-10-09 19:02:57] 2025-10-09 23:02:20,470 | INFO     | mean y: 2583884.673076923
[2025-10-09 19:02:57] 2025-10-09 23:02:20,471 | INFO     | -- intersect: 37757502905.430214
[2025-10-09 19:02:57] 2025-10-09 23:02:20,471 | INFO     | intersect: 37757502905.430214
[2025-10-09 19:02:57] 2025-10-09 23:02:20,471 | INFO     | chi2: 1.6726189285964874
[2025-10-09 19:02:57] 2025-10-09 23:02:20,471 | INFO     | sum of square deviations: 1067567961.5761591
[2025-10-09 19:02:57] 2025-10-09 23:02:20,472 | INFO     | sum of deviations: -23752173921.09934
[2025-10-09 19:02:57] 2025-10-09 23:02:20,472 | INFO     | mean x: 1760046010.0529802
[2025-10-09 19:02:57] 2025-10-09 23:02:20,472 | INFO     | mean y: 2585971.8874172186
[2025-10-09 19:02:57] 2025-10-09 23:02:20,472 | INFO     | -- intersect: 39161609513.76525
[2025-10-09 19:02:57] 2025-10-09 23:02:20,472 | INFO     | intersect: 39161609513.76525
[2025-10-09 19:02:57] 2025-10-09 23:02:20,472 | INFO     | chi2: 1.668657721943466
[2025-10-09 19:02:57] 2025-10-09 23:02:20,472 | INFO     | current chi2=1.668657721943466 (change=0.2368266067839706 %)
[2025-10-09 19:02:57] 2025-10-09 23:02:20,472 | INFO     | right removable region: 150
[2025-10-09 19:02:57] 2025-10-09 23:02:20,472 | INFO     | sum of square deviations: 1067572232.4635739
[2025-10-09 19:02:57] 2025-10-09 23:02:20,473 | INFO     | sum of deviations: -47877397279.00662
[2025-10-09 19:02:57] 2025-10-09 23:02:20,473 | INFO     | mean x: 1760046315.0596027
[2025-10-09 19:02:57] 2025-10-09 23:02:20,473 | INFO     | mean y: 2614847.5562913907
[2025-10-09 19:02:57] 2025-10-09 23:02:20,473 | INFO     | -- intersect: 78935387818.90225
[2025-10-09 19:02:57] 2025-10-09 23:02:20,473 | INFO     | intersect: 78935387818.90225
[2025-10-09 19:02:57] 2025-10-09 23:02:20,473 | INFO     | chi2: 0.20400293922308635
[2025-10-09 19:02:57] 2025-10-09 23:02:20,473 | INFO     | current chi2=0.20400293922308635 (change=87.80338212516419 %)
[2025-10-09 19:02:57] 2025-10-09 23:02:20,474 | INFO     | sum of square deviations: 964990819.9452049
[2025-10-09 19:02:57] 2025-10-09 23:02:20,474 | INFO     | sum of deviations: -43582190018.054794
[2025-10-09 19:02:57] 2025-10-09 23:02:20,474 | INFO     | mean x: 1760046467.5616438
[2025-10-09 19:02:57] 2025-10-09 23:02:20,474 | INFO     | mean y: 2608396.5616438356
[2025-10-09 19:02:57] 2025-10-09 23:02:20,474 | INFO     | -- intersect: 79492151721.16376
[2025-10-09 19:02:57] 2025-10-09 23:02:20,474 | INFO     | intersect: 79492151721.16376
[2025-10-09 19:02:57] 2025-10-09 23:02:20,475 | INFO     | chi2: 0.1937659648709386
[2025-10-09 19:02:57] 2025-10-09 23:02:20,475 | INFO     | current chi2=0.1937659648709386 (change=5.0180523825458945 %)
[2025-10-09 19:02:57] 2025-10-09 23:02:20,475 | INFO     | left removable region: 20
[2025-10-09 19:02:57] 2025-10-09 23:02:20,475 | INFO     | sum of square deviations: 681216562.0076928
[2025-10-09 19:02:57] 2025-10-09 23:02:20,475 | INFO     | sum of deviations: -28564785292.607697
[2025-10-09 19:02:57] 2025-10-09 23:02:20,476 | INFO     | mean x: 1760046589.5615385
[2025-10-09 19:02:57] 2025-10-09 23:02:20,476 | INFO     | mean y: 2589272.6384615386
[2025-10-09 19:02:57] 2025-10-09 23:02:20,476 | INFO     | -- intersect: 73804894941.24905
[2025-10-09 19:02:57] 2025-10-09 23:02:20,476 | INFO     | intersect: 73804894941.24905
[2025-10-09 19:02:57] 2025-10-09 23:02:20,476 | INFO     | chi2: 0.16170512873118115
[2025-10-09 19:02:57] 2025-10-09 23:02:20,476 | INFO     | -- intersect: 73804894941.24905
[2025-10-09 19:02:57] 2025-10-09 23:02:20,476 | INFO     | current memory leak: -41.93 B/s (using 130 data points, chi2=0.16)
[2025-10-09 19:02:57] 2025-10-09 23:02:20,476 | INFO     | could have reported an average CPU frequency of 3118 MHz (9 samples)
[2025-10-09 19:02:57] 2025-10-09 23:02:20,477 | INFO     | ..............................
[2025-10-09 19:02:57] 2025-10-09 23:02:20,477 | INFO     | . Timing measurements:
[2025-10-09 19:02:57] 2025-10-09 23:02:20,477 | INFO     | . get job = 0 s
[2025-10-09 19:02:57] 2025-10-09 23:02:20,477 | INFO     | . initial setup = 4 s
[2025-10-09 19:02:57] 2025-10-09 23:02:20,477 | INFO     | . payload setup = 9 s
[2025-10-09 19:02:57] 2025-10-09 23:02:20,477 | INFO     | . stage-in = 0 s
[2025-10-09 19:02:57] 2025-10-09 23:02:20,477 | INFO     | . payload execution = 9500 s
[2025-10-09 19:02:57] 2025-10-09 23:02:20,477 | INFO     | . stage-out = 1 s
[2025-10-09 19:02:57] 2025-10-09 23:02:20,477 | INFO     | . log creation = 0 s
[2025-10-09 19:02:57] 2025-10-09 23:02:20,478 | INFO     | ..............................
[2025-10-09 19:02:57] 2025-10-09 23:02:20,749 | INFO     | 
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | job summary report
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | --------------------------------------------------
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | PanDA job id: 6837337207
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | task id: 46676269
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | errors: (none)
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | pilot state: finished 
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | transexitcode: 0
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | exeerrorcode: 0
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | exeerrordiag: 
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | exitcode: 0
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | exitmsg: OK
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | cpuconsumptiontime: 30372 s
[2025-10-09 19:02:57] 2025-10-09 23:02:20,750 | INFO     | nevents: 400
[2025-10-09 19:02:57] 2025-10-09 23:02:20,751 | INFO     | neventsw: 0
[2025-10-09 19:02:57] 2025-10-09 23:02:20,751 | INFO     | pid: 666603
[2025-10-09 19:02:57] 2025-10-09 23:02:20,751 | INFO     | pgrp: 666603
[2025-10-09 19:02:57] 2025-10-09 23:02:20,751 | INFO     | corecount: 8
[2025-10-09 19:02:57] 2025-10-09 23:02:20,751 | INFO     | event service: False
[2025-10-09 19:02:57] 2025-10-09 23:02:20,751 | INFO     | sizes: {0: 2348804, 8: 2349066, 11: 2349094, 9513: 2377469, 9514: 2377468, 9515: 2386522, 9516: 2386706, 9527: 2386964}
[2025-10-09 19:02:57] 2025-10-09 23:02:20,751 | INFO     | --------------------------------------------------
[2025-10-09 19:02:57] 2025-10-09 23:02:20,751 | INFO     | 
[2025-10-09 19:02:57] 2025-10-09 23:02:20,751 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-09 19:02:57] 2025-10-09 23:02:20,857 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,858 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,858 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,858 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,858 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,858 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,858 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,858 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,858 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,859 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,859 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,859 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,859 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,859 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,859 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,859 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,859 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,859 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 19:02:57] 2025-10-09 23:02:20,859 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,859 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 19:02:57] 2025-10-09 23:02:20,859 | INFO     | job 6837337207 has completed (purged errors)
[2025-10-09 19:02:57] 2025-10-09 23:02:20,860 | INFO     | overall cleanup function is called
[2025-10-09 19:02:57] 2025-10-09 23:02:20,867 | INFO     | PID=659884 has CPU usage=10.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 19:02:57] 2025-10-09 23:02:20,868 | INFO     | .. there are 16 such processes running
[2025-10-09 19:02:57] 2025-10-09 23:02:21,874 | INFO     | --- collectZombieJob: --- 10, [666603]
[2025-10-09 19:02:57] 2025-10-09 23:02:21,875 | INFO     | zombie collector waiting for pid 666603
[2025-10-09 19:02:57] 2025-10-09 23:02:21,875 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 19:02:57] 2025-10-09 23:02:21,875 | INFO     | collected zombie processes
[2025-10-09 19:02:57] 2025-10-09 23:02:21,875 | INFO     | will attempt to kill all subprocesses of pid=666603
[2025-10-09 19:02:57] 2025-10-09 23:02:23,693 | INFO     | process IDs to be killed: [666603] (in reverse order)
[2025-10-09 19:02:57] 2025-10-09 23:02:23,891 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 19:02:57] 2025-10-09 23:02:23,892 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 19:02:57] 2025-10-09 23:02:23,991 | INFO     | did not find any defunct processes belonging to 666603
[2025-10-09 19:02:57] 2025-10-09 23:02:24,057 | INFO     | did not find any defunct processes belonging to 666603
[2025-10-09 19:02:57] 2025-10-09 23:02:24,058 | INFO     | ready for new job
[2025-10-09 19:02:57] 2025-10-09 23:02:24,058 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 19:02:57] 2025-10-09 23:02:24,081 | INFO     | ***************************************
[2025-10-09 19:02:57] 2025-10-09 23:02:24,081 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 19:02:57] 2025-10-09 23:02:24,081 | INFO     | ***************************************
[2025-10-09 19:02:57] 2025-10-09 23:02:24,081 | INFO     | 
[2025-10-09 19:02:57] 2025-10-09 23:02:24,090 | INFO     | architecture information:
[2025-10-09 19:02:57] 2025-10-09 23:02:24,090 | INFO     | executing command: cat /etc/os-release
[2025-10-09 19:02:57] 2025-10-09 23:02:24,128 | INFO     | cat /etc/os-release:
[2025-10-09 19:02:57] NAME="CentOS Linux"
[2025-10-09 19:02:57] VERSION="7 (Core)"
[2025-10-09 19:02:57] ID="centos"
[2025-10-09 19:02:57] ID_LIKE="rhel fedora"
[2025-10-09 19:02:57] VERSION_ID="7"
[2025-10-09 19:02:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 19:02:57] ANSI_COLOR="0;31"
[2025-10-09 19:02:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 19:02:57] HOME_URL="https://www.centos.org/"
[2025-10-09 19:02:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 19:02:57] 
[2025-10-09 19:02:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 19:02:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 19:02:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 19:02:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 19:02:57] 
[2025-10-09 19:02:57] 2025-10-09 23:02:24,130 | INFO     | ***************************************
[2025-10-09 19:02:57] 2025-10-09 23:02:24,650 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-09 19:02:57] 2025-10-09 23:02:24,737 | INFO     | sufficient remaining disk space (127842385920 B)
[2025-10-09 19:02:57] 2025-10-09 23:02:24,738 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 19:02:57] 2025-10-09 23:02:24,738 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 19:02:57] 2025-10-09 23:02:24,738 | INFO     | update_server=False
[2025-10-09 19:02:57] 2025-10-09 23:02:24,738 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 19:02:57] 2025-10-09 23:02:24,739 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 19:02:57] 2025-10-09 23:02:24,747 | INFO     | aborting loop
[2025-10-09 19:02:57] 2025-10-09 23:02:24,904 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 19:02:57] 2025-10-09 23:02:25,093 | INFO     | all payload control threads have been joined
[2025-10-09 19:02:57] 2025-10-09 23:02:25,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 19:02:57] 2025-10-09 23:02:25,654 | INFO     | all data control threads have been joined
[2025-10-09 19:02:57] 2025-10-09 23:02:25,744 | INFO     | [job] retrieve thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:25,753 | INFO     | [job] job monitor thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:25,770 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 19:02:57] 2025-10-09 23:02:25,808 | INFO     | all job control threads have been joined
[2025-10-09 19:02:57] 2025-10-09 23:02:25,823 | INFO     | [data] copytool_in thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:26,102 | INFO     | [payload] control thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:26,242 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:26,243 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:26,247 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:26,660 | INFO     | [data] control thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:26,682 | INFO     | [job] validate thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:26,730 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:26,776 | INFO     | [job] queue monitor thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:26,814 | INFO     | [job] control thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:26,891 | INFO     | [payload] validate_post thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:27,122 | INFO     | [data] copytool_out thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:27,339 | INFO     | [payload] failed_post thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:28,913 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 19:02:57] 2025-10-09 23:02:29,821 | INFO     | [monitor] cgroup control has ended
[2025-10-09 19:02:57] 2025-10-09 23:02:30,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140619481614144)>', '<ExcThread(monitor, started 140619133462272)>']
[2025-10-09 19:02:57] 2025-10-09 23:02:35,078 | INFO     | all workflow threads have been joined
[2025-10-09 19:02:57] 2025-10-09 23:02:35,079 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 19:02:57] 2025-10-09 23:02:35,080 | INFO     | traces error code: 0
[2025-10-09 19:02:57] 2025-10-09 23:02:35,080 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 19:02:57] 2025-10-09 23:02:55,399 | INFO     | PID=659884 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-09 19:02:57] 2025-10-09 23:02:55,419 | INFO     | .. there are 16 such processes running
[2025-10-09 19:02:57] 2025-10-09 23:02:55,424 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 19:02:57] 2025-10-09 23:02:55,424 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 19:02:57] 2025-10-09 23:02:55,424 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 19:02:57] 2025-10-09 23:02:55,425 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 19:02:57] 2025-10-09 23:02:55,425 | INFO     | [monitor] control thread has ended
[2025-10-09 19:02:57] 2025-10-09 23:02:56,057 [wrapper] ==== pilot stdout END ====
[2025-10-09 19:02:57] 2025-10-09 23:02:56,074 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 19:02:57] 2025-10-09 23:02:56,096 [wrapper] pilotpid: 659884
[2025-10-09 19:02:57] 2025-10-09 23:02:56,107 [wrapper] Pilot exit status: 0
[2025-10-09 19:02:57] 2025-10-09 23:02:56,168 [wrapper] pandaids: 6837337207
[2025-10-09 19:02:57] 2025-10-09 23:02:56,293 [wrapper] cleanup supervisor_pilot  995198 659885
[2025-10-09 19:02:57] 2025-10-09 23:02:56,418 [wrapper] Test setup, not cleaning
[2025-10-09 19:02:57] 2025-10-09 23:02:56,440 [wrapper] apfmon messages muted
[2025-10-09 19:02:57] 2025-10-09 23:02:56,444 [wrapper] ==== wrapper stdout END ====
[2025-10-09 19:02:57] 2025-10-09 23:02:56,459 [wrapper] ==== wrapper stderr END ====
[2025-10-09 19:02:57]  *** Error codes and diagnostics ***
[2025-10-09 19:02:57]     "exeErrorCode": 0,
[2025-10-09 19:02:57]     "exeErrorDiag": "",
[2025-10-09 19:02:57]     "pilotErrorCode": 0,
[2025-10-09 19:02:57]     "pilotErrorDiag": "",
[2025-10-09 19:02:57]  *** Listing of results directory ***
[2025-10-09 19:02:57] total 410964
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 07:59 pilot3.tar.gz
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 08:14 queuedata.json
[2025-10-09 19:02:57] -rwx------. 1 boincer umatlas     36292 Oct  9 08:16 runpilot2-wrapper.sh
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas       100 Oct  9 16:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 19:02:57] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 16:21 run_atlas
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas       105 Oct  9 16:21 job.xml
[2025-10-09 19:02:57] -rw-r--r--. 2 boincer umatlas 221726545 Oct  9 16:21 EVNT.46676267._000703.pool.root.1
[2025-10-09 19:02:57] -rw-r--r--. 2 boincer umatlas    569682 Oct  9 16:21 input.tar.gz
[2025-10-09 19:02:57] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 16:21 start_atlas.sh
[2025-10-09 19:02:57] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 16:21 shared
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas         0 Oct  9 16:21 boinc_lockfile
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas      2548 Oct  9 16:22 pandaJob.out
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas    975454 Oct  9 16:23 agis_schedconf.cvmfs.json
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas   1560401 Oct  9 16:23 agis_ddmendpoints.agis.ALL.json
[2025-10-09 19:02:57] drwx------. 5 boincer umatlas      4096 Oct  9 16:23 pilot3
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas      6945 Oct  9 18:54 init_data.xml
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas       529 Oct  9 19:01 boinc_task_state.xml
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas 191943130 Oct  9 19:01 HITS.46676269._017002.pool.root.1
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas      1043 Oct  9 19:02 memory_monitor_summary.json
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas    403895 Oct  9 19:02 log.46676269._017002.job.log.tgz.1
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas      7797 Oct  9 19:02 heartbeat.json
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas        95 Oct  9 19:02 pilot_heartbeat.json
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas       822 Oct  9 19:02 pilotlog.txt
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 19:02 boinc_mmap_file
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas   1221415 Oct  9 19:02 log.46676269._017002.job.log.1
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas        27 Oct  9 19:02 wrapper_checkpoint.txt
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas       357 Oct  9 19:02 output.list
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas       620 Oct  9 19:02 runtime_log
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas   1648640 Oct  9 19:02 result.tar.gz
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas      8703 Oct  9 19:02 runtime_log.err
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas       656 Oct  9 19:02 JiHMDmIk4Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmkqNMDmVB5TWn.diag
[2025-10-09 19:02:57] -rw-r--r--. 1 boincer umatlas     21255 Oct  9 19:02 stderr.txt
[2025-10-09 19:02:57] HITS file was successfully produced:
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas 191943130 Oct  9 19:01 shared/HITS.pool.root.1
[2025-10-09 19:02:57]  *** Contents of shared directory: ***
[2025-10-09 19:02:57] total 406176
[2025-10-09 19:02:57] -rw-r--r--. 2 boincer umatlas 221726545 Oct  9 16:21 ATLAS.root_0
[2025-10-09 19:02:57] -rw-r--r--. 2 boincer umatlas    569682 Oct  9 16:21 input.tar.gz
[2025-10-09 19:02:57] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 16:21 start_atlas.sh
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas 191943130 Oct  9 19:01 HITS.pool.root.1
[2025-10-09 19:02:57] -rw-------. 1 boincer umatlas   1648640 Oct  9 19:02 result.tar.gz
19:03:18 (653375): run_atlas exited; CPU time 30577.923331
19:03:18 (653375): called boinc_finish(0)

</stderr_txt>
]]>

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