Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:19:37 (3461947): wrapper (7.7.26015): starting
15:19:37 (3461947): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 15:19:37] Arguments: --nthreads 8
[2025-10-09 15:19:37] Threads: 8
[2025-10-09 15:19:37] Checking for CVMFS
[2025-10-09 15:19:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 15:19:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 15:19:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 15:19:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 15:19:39] 2.13.2.0 317867 134089 566916 151521 2 220 29542798 40960000 37345 16776704 0 386750943 99.814 174389714 30705 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 15:19:39] CVMFS is ok
[2025-10-09 15:19:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 15:19:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 15:19:39] Further information can be found at the LHC@home message board.
[2025-10-09 15:19:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 15:19:39] Checking for apptainer binary...
[2025-10-09 15:19:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 15:19:39] Running /usr/bin/apptainer --version
[2025-10-09 15:19:39] apptainer version 1.4.3-1.el9
[2025-10-09 15:19:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 15:19:40] c8-6-11.aglt2.org
[2025-10-09 15:19:40] apptainer works
[2025-10-09 15:19:40] Set ATHENA_PROC_NUMBER=8
[2025-10-09 15:19:40] Set ATHENA_CORE_NUMBER=8
[2025-10-09 15:19:40] Starting ATLAS job with PandaID=6837337603
[2025-10-09 15:19:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 17:15:16]  *** The last 200 lines of the pilot log: ***
[2025-10-09 17:15:17] 2025-10-09 21:03:15,754 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:15:17] 2025-10-09 21:03:17,889 | INFO     | PID=3473471 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 17:15:17] 2025-10-09 21:03:17,889 | INFO     | .. there are 40 such processes running
[2025-10-09 17:15:17] 2025-10-09 21:03:18,372 | INFO     | monitor loop #414: job 0:6837337603 is in state 'finished'
[2025-10-09 17:15:17] 2025-10-09 21:03:18,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:15:17] 2025-10-09 21:03:18,890 | INFO     | time since job start (6132s) is within the limit (172800.0s)
[2025-10-09 17:15:17] 2025-10-09 21:03:20,878 | INFO     | monitor loop #415: job 0:6837337603 is in state 'finished'
[2025-10-09 17:15:17] 2025-10-09 21:03:20,878 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:15:17] 2025-10-09 21:03:20,914 | INFO     | time since job start (6134s) is within the limit (172800.0s)
[2025-10-09 17:15:17] 2025-10-09 21:03:22,923 | INFO     | time since job start (6136s) is within the limit (172800.0s)
[2025-10-09 17:15:17] 2025-10-09 21:03:23,385 | INFO     | monitor loop #416: job 0:6837337603 is in state 'finished'
[2025-10-09 17:15:17] 2025-10-09 21:03:23,386 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:15:17] 2025-10-09 21:03:24,929 | INFO     | time since job start (6138s) is within the limit (172800.0s)
[2025-10-09 17:15:17] 2025-10-09 21:03:25,901 | INFO     | monitor loop #417: job 0:6837337603 is in state 'finished'
[2025-10-09 17:15:17] 2025-10-09 21:03:25,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:15:17] 2025-10-09 21:03:26,935 | INFO     | time since job start (6140s) is within the limit (172800.0s)
[2025-10-09 17:15:17] 2025-10-09 21:03:28,410 | INFO     | monitor loop #418: job 0:6837337603 is in state 'finished'
[2025-10-09 17:15:17] 2025-10-09 21:03:28,410 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:15:17] 2025-10-09 21:03:28,944 | INFO     | time since job start (6142s) is within the limit (172800.0s)
[2025-10-09 17:15:17] 2025-10-09 21:03:30,917 | INFO     | monitor loop #419: job 0:6837337603 is in state 'finished'
[2025-10-09 17:15:17] 2025-10-09 21:03:30,917 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:15:17] 2025-10-09 21:03:30,958 | INFO     | time since job start (6144s) is within the limit (172800.0s)
[2025-10-09 17:15:17] 2025-10-09 21:03:32,967 | INFO     | time since job start (6146s) is within the limit (172800.0s)
[2025-10-09 17:15:17] 2025-10-09 21:03:33,422 | INFO     | monitor loop #420: job 0:6837337603 is in state 'finished'
[2025-10-09 17:15:17] 2025-10-09 21:03:33,422 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:15:17] 2025-10-09 21:03:34,974 | INFO     | time since job start (6148s) is within the limit (172800.0s)
[2025-10-09 17:15:17] 2025-10-09 21:03:35,930 | INFO     | monitor loop #421: job 0:6837337603 is in state 'finished'
[2025-10-09 17:15:17] 2025-10-09 21:03:35,930 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:15:17] 2025-10-09 21:03:37,014 | INFO     | time since job start (6151s) is within the limit (172800.0s)
[2025-10-09 17:15:17] 2025-10-09 21:03:38,437 | INFO     | monitor loop #422: job 0:6837337603 is in state 'finished'
[2025-10-09 17:15:17] 2025-10-09 21:03:38,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:15:17] 2025-10-09 21:03:39,056 | INFO     | time since job start (6153s) is within the limit (172800.0s)
[2025-10-09 17:15:17] 2025-10-09 21:03:40,942 | INFO     | monitor loop #423: job 0:6837337603 is in state 'finished'
[2025-10-09 17:15:17] 2025-10-09 21:03:40,942 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 17:15:17] 2025-10-09 21:03:41,686 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-09 17:15:17] 2025-10-09 21:03:41,703 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1340234375025
[2025-10-09 17:15:17] 2025-10-09 21:03:41,809 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6837337603/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 17:15:17] 2025-10-09 21:03:41,809 | INFO     | extracted standard info from prmon json
[2025-10-09 17:15:17] 2025-10-09 21:03:41,809 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 17:15:17] 2025-10-09 21:03:41,824 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 17:15:17] 2025-10-09 21:03:41,824 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 17:15:17] 2025-10-09 21:03:41,824 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 17:15:17] 2025-10-09 21:03:41,825 | INFO     | fitting pss+swap vs Time
[2025-10-09 17:15:17] 2025-10-09 21:03:41,825 | INFO     | sum of square deviations: 233640386.5274725
[2025-10-09 17:15:17] 2025-10-09 21:03:41,825 | INFO     | sum of deviations: -4428952785.593408
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | mean x: 1760040878.1648352
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | mean y: 2415683.4395604394
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | -- intersect: 33366244882.505825
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | intersect: 33366244882.505825
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | chi2: 0.1533601697889439
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | -- intersect: 33366244882.505825
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | current memory leak: -18.96 B/s (using 91 data points, chi2=0.15)
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | could have reported an average CPU frequency of 3799 MHz (7 samples)
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | ..............................
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | . Timing measurements:
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | . get job = 1 s
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | . initial setup = 5 s
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | . payload setup = 48 s
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | . stage-in = 0 s
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | . payload execution = 5975 s
[2025-10-09 17:15:17] 2025-10-09 21:03:41,826 | INFO     | . stage-out = 3 s
[2025-10-09 17:15:17] 2025-10-09 21:03:41,827 | INFO     | . log creation = 0 s
[2025-10-09 17:15:17] 2025-10-09 21:03:41,827 | INFO     | ..............................
[2025-10-09 17:15:17] 2025-10-09 21:03:42,156 | INFO     | 
[2025-10-09 17:15:17] 2025-10-09 21:03:42,156 | INFO     | job summary report
[2025-10-09 17:15:17] 2025-10-09 21:03:42,156 | INFO     | --------------------------------------------------
[2025-10-09 17:15:17] 2025-10-09 21:03:42,156 | INFO     | PanDA job id: 6837337603
[2025-10-09 17:15:17] 2025-10-09 21:03:42,156 | INFO     | task id: 46676269
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | errors: (none)
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | pilot state: finished 
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | transexitcode: 0
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | exeerrorcode: 0
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | exeerrordiag: 
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | exitcode: 0
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | exitmsg: OK
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | cpuconsumptiontime: 22379 s
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | nevents: 400
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | neventsw: 0
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | pid: 3493692
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | pgrp: 3493692
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | corecount: 8
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | event service: False
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | sizes: {0: 2348027, 1: 2348712, 2: 2348911, 13: 2348911, 24: 2348967, 34: 2349197, 35: 2349413, 45: 2349441, 6029: 2376283, 6030: 2376282, 6034: 2385672, 6077: 238
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | --------------------------------------------------
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | 
[2025-10-09 17:15:17] 2025-10-09 21:03:42,157 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-09 17:15:17] 2025-10-09 21:03:42,287 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,287 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,287 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,287 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,287 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,287 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,287 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,287 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,287 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,287 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,287 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,288 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,288 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,288 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,288 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,288 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,288 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,288 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 17:15:17] 2025-10-09 21:03:42,288 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,288 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 17:15:17] 2025-10-09 21:03:42,288 | INFO     | job 6837337603 has completed (purged errors)
[2025-10-09 17:15:17] 2025-10-09 21:03:42,288 | INFO     | overall cleanup function is called
[2025-10-09 17:15:17] 2025-10-09 21:03:42,634 | INFO     | PID=3473471 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 17:15:17] 2025-10-09 21:03:42,634 | INFO     | .. there are 40 such processes running
[2025-10-09 17:15:17] 2025-10-09 21:03:43,295 | INFO     | --- collectZombieJob: --- 10, [3493692]
[2025-10-09 17:15:17] 2025-10-09 21:03:43,295 | INFO     | zombie collector waiting for pid 3493692
[2025-10-09 17:15:17] 2025-10-09 21:03:43,295 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 17:15:17] 2025-10-09 21:03:43,295 | INFO     | collected zombie processes
[2025-10-09 17:15:17] 2025-10-09 21:03:43,295 | INFO     | will attempt to kill all subprocesses of pid=3493692
[2025-10-09 17:15:17] 2025-10-09 21:03:45,645 | INFO     | process IDs to be killed: [3493692] (in reverse order)
[2025-10-09 17:15:17] 2025-10-09 21:03:46,582 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 17:15:17] 2025-10-09 21:03:46,582 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 17:15:17] 2025-10-09 21:03:46,617 | INFO     | did not find any defunct processes belonging to 3493692
[2025-10-09 17:15:17] 2025-10-09 21:03:46,642 | INFO     | did not find any defunct processes belonging to 3493692
[2025-10-09 17:15:17] 2025-10-09 21:03:46,643 | INFO     | ready for new job
[2025-10-09 17:15:17] 2025-10-09 21:03:46,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 17:15:17] 2025-10-09 21:03:46,644 | INFO     | ***************************************
[2025-10-09 17:15:17] 2025-10-09 21:03:46,644 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 17:15:17] 2025-10-09 21:03:46,644 | INFO     | ***************************************
[2025-10-09 17:15:17] 2025-10-09 21:03:46,644 | INFO     | 
[2025-10-09 17:15:17] 2025-10-09 21:03:46,680 | INFO     | architecture information:
[2025-10-09 17:15:17] 2025-10-09 21:03:46,695 | INFO     | executing command: cat /etc/os-release
[2025-10-09 17:15:17] 2025-10-09 21:03:46,797 | INFO     | cat /etc/os-release:
[2025-10-09 17:15:17] NAME="CentOS Linux"
[2025-10-09 17:15:17] VERSION="7 (Core)"
[2025-10-09 17:15:17] ID="centos"
[2025-10-09 17:15:17] ID_LIKE="rhel fedora"
[2025-10-09 17:15:17] VERSION_ID="7"
[2025-10-09 17:15:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 17:15:17] ANSI_COLOR="0;31"
[2025-10-09 17:15:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 17:15:17] HOME_URL="https://www.centos.org/"
[2025-10-09 17:15:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 17:15:17] 
[2025-10-09 17:15:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 17:15:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 17:15:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 17:15:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 17:15:17] 
[2025-10-09 17:15:17] 2025-10-09 21:03:46,797 | INFO     | ***************************************
[2025-10-09 17:15:17] 2025-10-09 21:03:47,301 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-09 17:15:17] 2025-10-09 21:03:47,387 | INFO     | sufficient remaining disk space (169246457856 B)
[2025-10-09 17:15:17] 2025-10-09 21:03:47,387 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 17:15:17] 2025-10-09 21:03:47,387 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 17:15:17] 2025-10-09 21:03:47,387 | INFO     | update_server=False
[2025-10-09 17:15:17] 2025-10-09 21:03:47,387 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 17:15:17] 2025-10-09 21:03:47,388 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 17:15:17] 2025-10-09 21:03:47,388 | INFO     | aborting loop
[2025-10-09 17:15:17] 2025-10-09 21:03:47,394 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 17:15:17] 2025-10-09 21:03:47,394 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 17:15:17] 2025-10-09 21:03:47,506 | INFO     | all data control threads have been joined
[2025-10-09 17:15:17] 2025-10-09 21:03:47,697 | INFO     | all payload control threads have been joined
[2025-10-09 17:15:17] 2025-10-09 21:03:48,394 | INFO     | [job] retrieve thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:48,394 | INFO     | [job] job monitor thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:48,400 | INFO     | [job] queue monitor thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:48,417 | INFO     | all job control threads have been joined
[2025-10-09 17:15:17] 2025-10-09 21:03:48,524 | INFO     | [data] control thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:48,655 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:48,655 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:48,705 | INFO     | [payload] control thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:48,898 | INFO     | [payload] failed_post thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:49,367 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:49,387 | INFO     | [payload] validate_post thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:49,400 | INFO     | [data] copytool_out thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:49,425 | INFO     | [job] control thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:49,546 | INFO     | [job] validate thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:49,631 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:49,638 | INFO     | [data] copytool_in thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:03:50,561 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 17:15:17] 2025-10-09 21:03:54,585 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 17:15:17] 2025-10-09 21:04:15,151 | INFO     | [monitor] cgroup control has ended
[2025-10-09 17:15:17] 2025-10-09 21:04:15,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139641151686464)>', '<ExcThread(monitor, started 139640879159040)>']
[2025-10-09 17:15:17] 2025-10-09 21:04:18,095 | INFO     | PID=3473471 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 17:15:17] 2025-10-09 21:04:18,095 | INFO     | .. there are 40 such processes running
[2025-10-09 17:15:17] 2025-10-09 21:04:18,096 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 17:15:17] 2025-10-09 21:04:18,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 17:15:17] 2025-10-09 21:04:18,096 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 17:15:17] 2025-10-09 21:04:18,096 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 17:15:17] 2025-10-09 21:04:18,096 | INFO     | [monitor] control thread has ended
[2025-10-09 17:15:17] 2025-10-09 21:04:20,641 | INFO     | all workflow threads have been joined
[2025-10-09 17:15:17] 2025-10-09 21:04:20,641 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 17:15:17] 2025-10-09 21:04:20,641 | INFO     | traces error code: 0
[2025-10-09 17:15:17] 2025-10-09 21:04:20,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 17:15:17] 2025-10-09 21:04:21,574 [wrapper] ==== pilot stdout END ====
[2025-10-09 17:15:17] 2025-10-09 21:04:21,604 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 17:15:17] 2025-10-09 21:04:21,623 [wrapper] pilotpid: 3473471
[2025-10-09 17:15:17] 2025-10-09 21:04:21,634 [wrapper] Pilot exit status: 0
[2025-10-09 17:15:17] 2025-10-09 21:04:21,780 [wrapper] pandaids: 6837337603
[2025-10-09 17:15:17] 2025-10-09 21:04:22,059 [wrapper] cleanup supervisor_pilot 4126904 3473472
[2025-10-09 17:15:17] 2025-10-09 21:04:22,084 [wrapper] Test setup, not cleaning
[2025-10-09 17:15:17] 2025-10-09 21:04:22,123 [wrapper] apfmon messages muted
[2025-10-09 17:15:17] 2025-10-09 21:04:22,227 [wrapper] ==== wrapper stdout END ====
[2025-10-09 17:15:17] 2025-10-09 21:04:22,241 [wrapper] ==== wrapper stderr END ====
[2025-10-09 17:15:17]  *** Error codes and diagnostics ***
[2025-10-09 17:15:17]     "exeErrorCode": 0,
[2025-10-09 17:15:17]     "exeErrorDiag": "",
[2025-10-09 17:15:17]     "pilotErrorCode": 0,
[2025-10-09 17:15:17]     "pilotErrorDiag": "",
[2025-10-09 17:15:17]  *** Listing of results directory ***
[2025-10-09 17:15:17] total 405884
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 08:21 pilot3.tar.gz
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 08:26 queuedata.json
[2025-10-09 17:15:17] -rwx------. 1 boincer umatlas     36292 Oct  9 08:26 runpilot2-wrapper.sh
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas       100 Oct  9 15:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 17:15:17] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 15:19 run_atlas
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas       105 Oct  9 15:19 job.xml
[2025-10-09 17:15:17] -rw-r--r--. 2 boincer umatlas 221009621 Oct  9 15:19 EVNT.46676267._000710.pool.root.1
[2025-10-09 17:15:17] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 15:19 start_atlas.sh
[2025-10-09 17:15:17] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 15:19 shared
[2025-10-09 17:15:17] -rw-r--r--. 2 boincer umatlas    569683 Oct  9 15:19 input.tar.gz
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas         0 Oct  9 15:19 boinc_lockfile
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas      2549 Oct  9 15:19 pandaJob.out
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas    975454 Oct  9 15:21 agis_schedconf.cvmfs.json
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas   1560401 Oct  9 15:21 agis_ddmendpoints.agis.ALL.json
[2025-10-09 17:15:17] drwx------. 5 boincer umatlas      4096 Oct  9 15:21 pilot3
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas 188373287 Oct  9 17:01 HITS.46676269._017171.pool.root.1
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas       530 Oct  9 17:02 boinc_task_state.xml
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas      1049 Oct  9 17:02 memory_monitor_summary.json
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas    350769 Oct  9 17:02 log.46676269._017171.job.log.tgz.1
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas      7804 Oct  9 17:03 heartbeat.json
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas        95 Oct  9 17:04 pilot_heartbeat.json
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas      4825 Oct  9 17:04 pilotlog.txt
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas    821593 Oct  9 17:04 log.46676269._017171.job.log.1
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas       357 Oct  9 17:04 output.list
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas       620 Oct  9 17:04 runtime_log
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas   1187840 Oct  9 17:04 result.tar.gz
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas       656 Oct  9 17:04 uoMMDmFu4Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmppZNDmnwlALo.diag
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas      8698 Oct  9 17:04 runtime_log.err
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas      7163 Oct  9 17:13 init_data.xml
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 17:15 boinc_mmap_file
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas        27 Oct  9 17:15 wrapper_checkpoint.txt
[2025-10-09 17:15:17] -rw-r--r--. 1 boincer umatlas     22470 Oct  9 17:15 stderr.txt
[2025-10-09 17:15:17] HITS file was successfully produced:
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas 188373287 Oct  9 17:01 shared/HITS.pool.root.1
[2025-10-09 17:15:17]  *** Contents of shared directory: ***
[2025-10-09 17:15:17] total 401536
[2025-10-09 17:15:17] -rw-r--r--. 2 boincer umatlas 221009621 Oct  9 15:19 ATLAS.root_0
[2025-10-09 17:15:17] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 15:19 start_atlas.sh
[2025-10-09 17:15:17] -rw-r--r--. 2 boincer umatlas    569683 Oct  9 15:19 input.tar.gz
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas 188373287 Oct  9 17:01 HITS.pool.root.1
[2025-10-09 17:15:17] -rw-------. 1 boincer umatlas   1187840 Oct  9 17:04 result.tar.gz
17:15:19 (3461947): run_atlas exited; CPU time 22541.769895
17:15:19 (3461947): called boinc_finish(0)

</stderr_txt>
]]>

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