Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:58:21 (672338): wrapper (7.7.26015): starting
22:58:21 (672338): wrapper: running run_atlas (--nthreads 3)
[2025-10-09 22:58:21] Arguments: --nthreads 3
[2025-10-09 22:58:21] Threads: 3
[2025-10-09 22:58:21] Checking for CVMFS
[2025-10-09 22:58:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 22:58:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 22:58:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 22:58:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 22:58:21] 2.9.2.0 572386 329 60704 151522 3 57 21017982 36864001 0 130560 0 262596 99.985 12173 1048 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-09 22:58:21] CVMFS is ok
[2025-10-09 22:58:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 22:58:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 22:58:21] Further information can be found at the LHC@home message board.
[2025-10-09 22:58:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 22:58:21] Checking for apptainer binary...
[2025-10-09 22:58:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 22:58:21] Running /usr/bin/apptainer --version
[2025-10-09 22:58:21] apptainer version 1.4.1-1.1
[2025-10-09 22:58:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 22:58:21] thA354b
[2025-10-09 22:58:21] apptainer works
[2025-10-09 22:58:21] Set ATHENA_PROC_NUMBER=3
[2025-10-09 22:58:21] Set ATHENA_CORE_NUMBER=3
[2025-10-09 22:58:21] Starting ATLAS job with PandaID=6837327848
[2025-10-09 22:58:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 00:22:38]  *** The last 200 lines of the pilot log: ***
[2025-10-10 00:22:38]  storage_token=
[2025-10-10 00:22:38]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6837327848/log.46676269._013282.job.log.tgz.1
[2025-10-10 00:22:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/fa/log.46676269._013282.job.log.tgz.1
[2025-10-10 00:22:38]  workdir=None
[2025-10-10 00:22:38] ]
[2025-10-10 00:22:38] 2025-10-09 22:21:39,230 | INFO     | transferring file log.46676269._013282.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6837327848/log.46676269._013282.job.log.tgz.1 to /local/data/boinc/
[2025-10-10 00:22:38] 2025-10-09 22:21:39,230 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6837327848/log.46676269._013282.job.log.tgz.1 /local/data/boinc/slots/0/log.46676269._0132
[2025-10-10 00:22:38] 2025-10-09 22:21:39,241 | INFO     | adding to output.list: log.46676269._013282.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/fa/log.46676269._013282.job.log.tg
[2025-10-10 00:22:38] 2025-10-09 22:21:39,242 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 00:22:38] 2025-10-09 22:21:39,242 | INFO     | summary of transferred files:
[2025-10-10 00:22:38] 2025-10-09 22:21:39,242 | INFO     |  -- lfn=log.46676269._013282.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 00:22:38] 2025-10-09 22:21:39,242 | INFO     | stage-out finished correctly
[2025-10-10 00:22:38] 2025-10-09 22:21:39,242 | INFO     | time since job start (4993s) is within the limit (172800.0s)
[2025-10-10 00:22:38] 2025-10-09 22:21:41,258 | INFO     | time since job start (4995s) is within the limit (172800.0s)
[2025-10-10 00:22:38] 2025-10-09 22:21:41,685 | WARNING  | process 682486 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 00:22:38] 2025-10-09 22:21:41,685 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6837327848/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 00:22:38] 2025-10-09 22:21:41,720 | INFO     | number of running child processes to parent process 682486: 1
[2025-10-10 00:22:38] 2025-10-09 22:21:41,720 | INFO     | maximum number of monitored processes: 6
[2025-10-10 00:22:38] 2025-10-09 22:21:42,315 | INFO     | PID=676054 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 00:22:38] 2025-10-09 22:21:42,535 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 00:22:38] 2025-10-09 22:21:43,316 | INFO     | time since job start (4997s) is within the limit (172800.0s)
[2025-10-10 00:22:38] 2025-10-09 22:21:43,407 | INFO     | job 6837327848 has state=finished
[2025-10-10 00:22:38] 2025-10-09 22:21:43,407 | INFO     | preparing for final server update for job 6837327848 in state='finished'
[2025-10-10 00:22:38] 2025-10-09 22:21:43,408 | INFO     | this job has now completed (state=finished)
[2025-10-10 00:22:38] 2025-10-09 22:21:43,408 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 00:22:38] 2025-10-09 22:21:43,408 | INFO     | log transfer has been attempted: DONE
[2025-10-10 00:22:38] 2025-10-09 22:21:43,408 | INFO     | job 6837327848 has finished - writing final server update
[2025-10-10 00:22:38] 2025-10-09 22:21:43,408 | INFO     | total number of processed events: 400 (read)
[2025-10-10 00:22:38] 2025-10-09 22:21:43,409 | INFO     | executing command: lscpu
[2025-10-10 00:22:38] 2025-10-09 22:21:43,424 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 00:22:38] 2025-10-09 22:21:44,224 | INFO     | monitor loop #384: job 0:6837327848 is in state 'finished'
[2025-10-10 00:22:38] 2025-10-09 22:21:44,224 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 00:22:38] 2025-10-09 22:21:45,323 | INFO     | time since job start (4999s) is within the limit (172800.0s)
[2025-10-10 00:22:38] 2025-10-09 22:21:46,727 | INFO     | monitor loop #385: job 0:6837327848 is in state 'finished'
[2025-10-10 00:22:38] 2025-10-09 22:21:46,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 00:22:38] 2025-10-09 22:21:47,328 | INFO     | time since job start (5001s) is within the limit (172800.0s)
[2025-10-10 00:22:38] 2025-10-09 22:21:49,209 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 00:22:38] 2025-10-09 22:21:49,211 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3691.285666666667
[2025-10-10 00:22:38] 2025-10-09 22:21:49,212 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6837327848/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 00:22:38] 2025-10-09 22:21:49,212 | INFO     | extracted standard info from prmon json
[2025-10-10 00:22:38] 2025-10-09 22:21:49,212 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 00:22:38] 2025-10-09 22:21:49,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 00:22:38] 2025-10-09 22:21:49,212 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 00:22:38] 2025-10-09 22:21:49,212 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | fitting pss+swap vs Time
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | sum of square deviations: 130793150.0
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | sum of deviations: -6367269731.0
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | mean x: 1760046088.0
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | mean y: 2404916.8133333335
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | -- intersect: 85684936313.04749
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | intersect: 85684936313.04749
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | chi2: 0.1312038210487614
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | -- intersect: 85684936313.04749
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | current memory leak: -48.68 B/s (using 75 data points, chi2=0.13)
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | could have reported an average CPU frequency of 3901 MHz (6 samples)
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | ..............................
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | . Timing measurements:
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | . get job = 0 s
[2025-10-10 00:22:38] 2025-10-09 22:21:49,213 | INFO     | . initial setup = 1 s
[2025-10-10 00:22:38] 2025-10-09 22:21:49,214 | INFO     | . payload setup = 2 s
[2025-10-10 00:22:38] 2025-10-09 22:21:49,214 | INFO     | . stage-in = 0 s
[2025-10-10 00:22:38] 2025-10-09 22:21:49,214 | INFO     | . payload execution = 4973 s
[2025-10-10 00:22:38] 2025-10-09 22:21:49,214 | INFO     | . stage-out = 0 s
[2025-10-10 00:22:38] 2025-10-09 22:21:49,214 | INFO     | . log creation = 0 s
[2025-10-10 00:22:38] 2025-10-09 22:21:49,214 | INFO     | ..............................
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | 
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | job summary report
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | --------------------------------------------------
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | PanDA job id: 6837327848
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | task id: 46676269
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | errors: (none)
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | pilot state: finished 
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | transexitcode: 0
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | exeerrorcode: 0
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | exeerrordiag: 
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | exitcode: 0
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | exitmsg: OK
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | cpuconsumptiontime: 14301 s
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | nevents: 400
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | neventsw: 0
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | pid: 682486
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | pgrp: 682486
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | corecount: 3
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | event service: False
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | sizes: {0: 2348632, 1: 2348887, 3: 2349149, 11: 2349177, 4980: 2384648, 4983: 2384648, 4990: 2384970}
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | --------------------------------------------------
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | 
[2025-10-10 00:22:38] 2025-10-09 22:21:49,245 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-10 00:22:38] 2025-10-09 22:21:49,257 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,257 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,257 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | job 6837327848 has completed (purged errors)
[2025-10-10 00:22:38] 2025-10-09 22:21:49,258 | INFO     | overall cleanup function is called
[2025-10-10 00:22:38] 2025-10-09 22:21:50,265 | INFO     | --- collectZombieJob: --- 10, [682486]
[2025-10-10 00:22:38] 2025-10-09 22:21:50,265 | INFO     | zombie collector waiting for pid 682486
[2025-10-10 00:22:38] 2025-10-09 22:21:50,265 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 00:22:38] 2025-10-09 22:21:50,265 | INFO     | collected zombie processes
[2025-10-10 00:22:38] 2025-10-09 22:21:50,265 | INFO     | will attempt to kill all subprocesses of pid=682486
[2025-10-10 00:22:38] 2025-10-09 22:21:50,307 | INFO     | process IDs to be killed: [682486] (in reverse order)
[2025-10-10 00:22:38] 2025-10-09 22:21:50,330 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 00:22:38] 2025-10-09 22:21:50,330 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 00:22:38] 2025-10-09 22:21:50,331 | INFO     | did not find any defunct processes belonging to 682486
[2025-10-10 00:22:38] 2025-10-09 22:21:50,332 | INFO     | did not find any defunct processes belonging to 682486
[2025-10-10 00:22:38] 2025-10-09 22:21:50,332 | INFO     | ready for new job
[2025-10-10 00:22:38] 2025-10-09 22:21:50,332 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 00:22:38] 2025-10-09 22:21:50,333 | INFO     | ***************************************
[2025-10-10 00:22:38] 2025-10-09 22:21:50,333 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 00:22:38] 2025-10-09 22:21:50,333 | INFO     | ***************************************
[2025-10-10 00:22:38] 2025-10-09 22:21:50,333 | INFO     | 
[2025-10-10 00:22:38] 2025-10-09 22:21:50,333 | INFO     | architecture information:
[2025-10-10 00:22:38] 2025-10-09 22:21:50,334 | INFO     | executing command: cat /etc/os-release
[2025-10-10 00:22:38] 2025-10-09 22:21:50,342 | INFO     | cat /etc/os-release:
[2025-10-10 00:22:38] NAME="CentOS Linux"
[2025-10-10 00:22:38] VERSION="7 (Core)"
[2025-10-10 00:22:38] ID="centos"
[2025-10-10 00:22:38] ID_LIKE="rhel fedora"
[2025-10-10 00:22:38] VERSION_ID="7"
[2025-10-10 00:22:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 00:22:38] ANSI_COLOR="0;31"
[2025-10-10 00:22:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 00:22:38] HOME_URL="https://www.centos.org/"
[2025-10-10 00:22:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 00:22:38] 
[2025-10-10 00:22:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 00:22:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 00:22:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 00:22:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 00:22:38] 
[2025-10-10 00:22:38] 2025-10-09 22:21:50,342 | INFO     | ***************************************
[2025-10-10 00:22:38] 2025-10-09 22:21:50,845 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-10 00:22:38] 2025-10-09 22:21:50,857 | INFO     | sufficient remaining disk space (339635863552 B)
[2025-10-10 00:22:38] 2025-10-09 22:21:50,858 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 00:22:38] 2025-10-09 22:21:50,858 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 00:22:38] 2025-10-09 22:21:50,858 | INFO     | update_server=False
[2025-10-10 00:22:38] 2025-10-09 22:21:50,858 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 00:22:38] 2025-10-09 22:21:50,858 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 00:22:38] 2025-10-09 22:21:50,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 00:22:38] 2025-10-09 22:21:50,858 | INFO     | aborting loop
[2025-10-10 00:22:38] 2025-10-09 22:21:51,175 | INFO     | all payload control threads have been joined
[2025-10-10 00:22:38] 2025-10-09 22:21:51,287 | INFO     | all data control threads have been joined
[2025-10-10 00:22:38] 2025-10-09 22:21:51,864 | INFO     | [job] retrieve thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:51,864 | INFO     | [job] job monitor thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:51,864 | INFO     | [job] queue monitor thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:51,977 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:52,181 | INFO     | [payload] control thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:52,188 | INFO     | all job control threads have been joined
[2025-10-10 00:22:38] 2025-10-09 22:21:52,214 | INFO     | [payload] failed_post thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:52,289 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 00:22:38] 2025-10-09 22:21:52,292 | INFO     | [data] control thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:52,456 | INFO     | [data] copytool_in thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:52,809 | INFO     | [payload] validate_post thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:52,996 | INFO     | [job] validate thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:53,077 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 00:22:38] 2025-10-09 22:21:53,103 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:53,146 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:53,194 | INFO     | [job] control thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:54,295 | INFO     | [data] copytool_out thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:21:57,084 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:22:01,314 | INFO     | job.realtimelogging is not enabled
[2025-10-10 00:22:38] 2025-10-09 22:22:02,320 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 00:22:38] 2025-10-09 22:22:20,439 | INFO     | PID=676054 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 00:22:38] 2025-10-09 22:22:20,439 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 00:22:38] 2025-10-09 22:22:20,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 00:22:38] 2025-10-09 22:22:20,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 00:22:38] 2025-10-09 22:22:31,868 | INFO     | [monitor] cgroup control has ended
[2025-10-10 00:22:38] 2025-10-09 22:22:32,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245726820160)>', '<ExcThread(monitor, started 140245110617856)>']
[2025-10-10 00:22:38] 2025-10-09 22:22:33,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 00:22:38] 2025-10-09 22:22:33,503 | INFO     | [monitor] control thread has ended
[2025-10-10 00:22:38] 2025-10-09 22:22:38,001 | INFO     | all workflow threads have been joined
[2025-10-10 00:22:38] 2025-10-09 22:22:38,001 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 00:22:38] 2025-10-09 22:22:38,001 | INFO     | traces error code: 0
[2025-10-10 00:22:38] 2025-10-09 22:22:38,001 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 00:22:38] 2025-10-09 22:22:38,052 [wrapper] ==== pilot stdout END ====
[2025-10-10 00:22:38] 2025-10-09 22:22:38,055 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 00:22:38] 2025-10-09 22:22:38,057 [wrapper] pilotpid: 676054
[2025-10-10 00:22:38] 2025-10-09 22:22:38,059 [wrapper] Pilot exit status: 0
[2025-10-10 00:22:38] 2025-10-09 22:22:38,066 [wrapper] pandaids: 6837327848
[2025-10-10 00:22:38] 2025-10-09 22:22:38,082 [wrapper] cleanup supervisor_pilot  694799 676055
[2025-10-10 00:22:38] 2025-10-09 22:22:38,084 [wrapper] Test setup, not cleaning
[2025-10-10 00:22:38] 2025-10-09 22:22:38,087 [wrapper] apfmon messages muted
[2025-10-10 00:22:38] 2025-10-09 22:22:38,089 [wrapper] ==== wrapper stdout END ====
[2025-10-10 00:22:38] 2025-10-09 22:22:38,091 [wrapper] ==== wrapper stderr END ====
[2025-10-10 00:22:38]  *** Error codes and diagnostics ***
[2025-10-10 00:22:38]     "exeErrorCode": 0,
[2025-10-10 00:22:38]     "exeErrorDiag": "",
[2025-10-10 00:22:38]     "pilotErrorCode": 0,
[2025-10-10 00:22:38]     "pilotErrorDiag": "",
[2025-10-10 00:22:38]  *** Listing of results directory ***
[2025-10-10 00:22:38] total 420228
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc    557409 Oct  9 12:27 pilot3.tar.gz
[2025-10-10 00:22:38] -rwx------ 1 boinc boinc     36292 Oct  9 12:43 runpilot2-wrapper.sh
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc      5112 Oct  9 12:45 queuedata.json
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc       100 Oct  9 22:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 00:22:38] -rwxr-xr-x 1 boinc boinc      7986 Oct  9 22:58 run_atlas
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc       105 Oct  9 22:58 job.xml
[2025-10-10 00:22:38] -rw-r--r-- 2 boinc boinc 221876167 Oct  9 22:58 EVNT.46676267._000541.pool.root.1
[2025-10-10 00:22:38] drwxrwx--x 2 boinc boinc      4096 Oct  9 22:58 shared
[2025-10-10 00:22:38] -rw-r--r-- 2 boinc boinc    569681 Oct  9 22:58 input.tar.gz
[2025-10-10 00:22:38] -rw-r--r-- 2 boinc boinc     15120 Oct  9 22:58 start_atlas.sh
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc         0 Oct  9 22:58 boinc_setup_complete
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc      6441 Oct  9 22:58 init_data.xml
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc         0 Oct  9 22:58 boinc_lockfile
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc      2550 Oct  9 22:58 pandaJob.out
[2025-10-10 00:22:38] -rw------- 1 boinc boinc    975454 Oct  9 22:58 agis_schedconf.cvmfs.json
[2025-10-10 00:22:38] -rw------- 1 boinc boinc   1560401 Oct  9 22:58 agis_ddmendpoints.agis.ALL.json
[2025-10-10 00:22:38] drwx------ 5 boinc boinc      4096 Oct  9 22:58 pilot3
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc       529 Oct 10 00:21 boinc_task_state.xml
[2025-10-10 00:22:38] -rw------- 1 boinc boinc 202574443 Oct 10 00:21 HITS.46676269._013282.pool.root.1
[2025-10-10 00:22:38] -rw------- 1 boinc boinc      1022 Oct 10 00:21 memory_monitor_summary.json
[2025-10-10 00:22:38] -rw------- 1 boinc boinc    247990 Oct 10 00:21 log.46676269._013282.job.log.tgz.1
[2025-10-10 00:22:38] -rw------- 1 boinc boinc      7760 Oct 10 00:21 heartbeat.json
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc      8192 Oct 10 00:22 boinc_mmap_file
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc        27 Oct 10 00:22 wrapper_checkpoint.txt
[2025-10-10 00:22:38] -rw------- 1 boinc boinc        95 Oct 10 00:22 pilot_heartbeat.json
[2025-10-10 00:22:38] -rw------- 1 boinc boinc      4823 Oct 10 00:22 pilotlog.txt
[2025-10-10 00:22:38] -rw------- 1 boinc boinc    733172 Oct 10 00:22 log.46676269._013282.job.log.1
[2025-10-10 00:22:38] -rw------- 1 boinc boinc       357 Oct 10 00:22 output.list
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc       620 Oct 10 00:22 runtime_log
[2025-10-10 00:22:38] -rw------- 1 boinc boinc   1003520 Oct 10 00:22 result.tar.gz
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc      8782 Oct 10 00:22 runtime_log.err
[2025-10-10 00:22:38] -rw------- 1 boinc boinc       659 Oct 10 00:22 qfuLDmkI3Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9DZNDmhhd6Qn.diag
[2025-10-10 00:22:38] -rw-r--r-- 1 boinc boinc     22260 Oct 10 00:22 stderr.txt
[2025-10-10 00:22:38] HITS file was successfully produced:
[2025-10-10 00:22:38] -rw------- 1 boinc boinc 202574443 Oct 10 00:21 shared/HITS.pool.root.1
[2025-10-10 00:22:38]  *** Contents of shared directory: ***
[2025-10-10 00:22:38] total 416068
[2025-10-10 00:22:38] -rw-r--r-- 2 boinc boinc 221876167 Oct  9 22:58 ATLAS.root_0
[2025-10-10 00:22:38] -rw-r--r-- 2 boinc boinc    569681 Oct  9 22:58 input.tar.gz
[2025-10-10 00:22:38] -rw-r--r-- 2 boinc boinc     15120 Oct  9 22:58 start_atlas.sh
[2025-10-10 00:22:38] -rw------- 1 boinc boinc 202574443 Oct 10 00:21 HITS.pool.root.1
[2025-10-10 00:22:38] -rw------- 1 boinc boinc   1003520 Oct 10 00:22 result.tar.gz
00:22:40 (672338): run_atlas exited; CPU time 14318.930673
00:22:40 (672338): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN