Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
20:31:15 (1104725): wrapper (7.7.26015): starting
20:31:15 (1104725): wrapper: running run_atlas (--nthreads 4)
[2025-10-09 20:31:15] Arguments: --nthreads 4
[2025-10-09 20:31:15] Threads: 4
[2025-10-09 20:31:15] Checking for CVMFS
[2025-10-09 20:31:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 20:31:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 20:31:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 20:31:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 20:31:16] 2.13.2.0 428253 398 50648 151520 1 57 3115525 4096000 2766 130560 0 1856977 99.998 14836 1329 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-09 20:31:16] CVMFS is ok
[2025-10-09 20:31:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 20:31:16] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-09 20:31:16] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-09 20:31:16] Further information can be found at the LHC@home message board.
[2025-10-09 20:31:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 20:31:16] Checking for apptainer binary...
[2025-10-09 20:31:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 20:31:16] Running /usr/bin/apptainer --version
[2025-10-09 20:31:16] apptainer version 1.4.2
[2025-10-09 20:31:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 20:31:16] Ryzen-9-7950X3D-Zen4-Ubu24
[2025-10-09 20:31:16] apptainer works
[2025-10-09 20:31:16] Set ATHENA_PROC_NUMBER=4
[2025-10-09 20:31:16] Set ATHENA_CORE_NUMBER=4
[2025-10-09 20:31:16] Starting ATLAS job with PandaID=6837337717
[2025-10-09 20:31:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 21:55:36]  *** The last 200 lines of the pilot log: ***
[2025-10-09 21:55:36]  status_code=0
[2025-10-09 21:55:36]  storage_token=
[2025-10-09 21:55:36]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6837337717/log.46676269._017285.job.log.tgz.1
[2025-10-09 21:55:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/97/54/log.46676269._017285.job.log.tgz.1
[2025-10-09 21:55:36]  workdir=None
[2025-10-09 21:55:36] ]
[2025-10-09 21:55:36] 2025-10-09 19:54:25,168 | INFO     | transferring file log.46676269._017285.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6837337717/log.46676269._017285.job.log.tgz.1 to /var/lib/boinc
[2025-10-09 21:55:36] 2025-10-09 19:54:25,168 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6837337717/log.46676269._017285.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.466762
[2025-10-09 21:55:36] 2025-10-09 19:54:25,189 | INFO     | adding to output.list: log.46676269._017285.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/97/54/log.46676269._017285.job.log.tg
[2025-10-09 21:55:36] 2025-10-09 19:54:25,189 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 21:55:36] 2025-10-09 19:54:25,189 | INFO     | summary of transferred files:
[2025-10-09 21:55:36] 2025-10-09 19:54:25,189 | INFO     |  -- lfn=log.46676269._017285.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 21:55:36] 2025-10-09 19:54:25,189 | INFO     | stage-out finished correctly
[2025-10-09 21:55:36] 2025-10-09 19:54:25,584 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 21:55:36] 2025-10-09 19:54:26,140 | INFO     | time since job start (4983s) is within the limit (172800.0s)
[2025-10-09 21:55:36] 2025-10-09 19:54:27,222 | INFO     | PID=1108572 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 21:55:36] 2025-10-09 19:54:27,222 | INFO     | .. there are 5 such processes running
[2025-10-09 21:55:36] 2025-10-09 19:54:28,222 | INFO     | time since job start (4985s) is within the limit (172800.0s)
[2025-10-09 21:55:36] 2025-10-09 19:54:28,604 | INFO     | job 6837337717 has state=finished
[2025-10-09 21:55:36] 2025-10-09 19:54:28,604 | INFO     | preparing for final server update for job 6837337717 in state='finished'
[2025-10-09 21:55:36] 2025-10-09 19:54:28,607 | INFO     | this job has now completed (state=finished)
[2025-10-09 21:55:36] 2025-10-09 19:54:28,607 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 21:55:36] 2025-10-09 19:54:28,607 | INFO     | log transfer has been attempted: DONE
[2025-10-09 21:55:36] 2025-10-09 19:54:28,607 | INFO     | job 6837337717 has finished - writing final server update
[2025-10-09 21:55:36] 2025-10-09 19:54:28,607 | INFO     | total number of processed events: 400 (read)
[2025-10-09 21:55:36] 2025-10-09 19:54:28,609 | INFO     | executing command: lscpu
[2025-10-09 21:55:36] 2025-10-09 19:54:28,622 | WARNING  | process 1115216 can no longer be monitored (due to stat problems) - aborting
[2025-10-09 21:55:36] 2025-10-09 19:54:28,622 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6837337717/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 21:55:36] 2025-10-09 19:54:28,634 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 21:55:36] 2025-10-09 19:54:28,697 | INFO     | number of running child processes to parent process 1115216: 1
[2025-10-09 21:55:36] 2025-10-09 19:54:28,698 | INFO     | maximum number of monitored processes: 6
[2025-10-09 21:55:36] 2025-10-09 19:54:30,227 | INFO     | time since job start (4987s) is within the limit (172800.0s)
[2025-10-09 21:55:36] 2025-10-09 19:54:31,201 | INFO     | monitor loop #381: job 0:6837337717 is in state 'finished'
[2025-10-09 21:55:36] 2025-10-09 19:54:31,202 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 21:55:36] 2025-10-09 19:54:32,232 | INFO     | time since job start (4989s) is within the limit (172800.0s)
[2025-10-09 21:55:36] 2025-10-09 19:54:32,937 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-09 21:55:36] 2025-10-09 19:54:32,940 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4654.309499999999
[2025-10-09 21:55:36] 2025-10-09 19:54:32,943 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6837337717/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 21:55:36] 2025-10-09 19:54:32,943 | INFO     | extracted standard info from prmon json
[2025-10-09 21:55:36] 2025-10-09 19:54:32,943 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 21:55:36] 2025-10-09 19:54:32,943 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 21:55:36] 2025-10-09 19:54:32,943 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 21:55:36] 2025-10-09 19:54:32,943 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 21:55:36] 2025-10-09 19:54:32,944 | INFO     | fitting pss+swap vs Time
[2025-10-09 21:55:36] 2025-10-09 19:54:32,944 | INFO     | sum of square deviations: 130793150.0
[2025-10-09 21:55:36] 2025-10-09 19:54:32,944 | INFO     | sum of deviations: -5430790655.0
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | mean x: 1760037266.0
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | mean y: 2377159.7333333334
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | -- intersect: 73082610617.25424
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | intersect: 73082610617.25424
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | chi2: 0.010439925765627932
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | -- intersect: 73082610617.25424
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | current memory leak: -41.52 B/s (using 75 data points, chi2=0.01)
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | could have reported an average CPU frequency of 4426 MHz (6 samples)
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | ..............................
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | . Timing measurements:
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | . get job = 0 s
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | . initial setup = 1 s
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | . payload setup = 3 s
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | . stage-in = 0 s
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | . payload execution = 4960 s
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | . stage-out = 0 s
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | . log creation = 0 s
[2025-10-09 21:55:36] 2025-10-09 19:54:32,945 | INFO     | ..............................
[2025-10-09 21:55:36] 2025-10-09 19:54:32,991 | INFO     | 
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | job summary report
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | --------------------------------------------------
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | PanDA job id: 6837337717
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | task id: 46676269
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | errors: (none)
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | pilot state: finished 
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | transexitcode: 0
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | exeerrorcode: 0
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | exeerrordiag: 
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | exitcode: 0
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | exitmsg: OK
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | cpuconsumptiontime: 19145 s
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | nevents: 400
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | neventsw: 0
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | pid: 1115216
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | pgrp: 1115216
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | corecount: 4
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | event service: False
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | sizes: {0: 2348691, 1: 2348890, 3: 2349152, 11: 2349180, 4968: 2384625, 4976: 2384763}
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | --------------------------------------------------
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | 
[2025-10-09 21:55:36] 2025-10-09 19:54:32,992 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-10-09 21:55:36] 2025-10-09 19:54:33,006 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,006 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,006 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,006 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,006 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,006 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,007 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,007 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,007 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,007 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 21:55:36] 2025-10-09 19:54:33,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,007 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 21:55:36] 2025-10-09 19:54:33,007 | INFO     | job 6837337717 has completed (purged errors)
[2025-10-09 21:55:36] 2025-10-09 19:54:33,007 | INFO     | overall cleanup function is called
[2025-10-09 21:55:36] 2025-10-09 19:54:34,014 | INFO     | --- collectZombieJob: --- 10, [1115216]
[2025-10-09 21:55:36] 2025-10-09 19:54:34,014 | INFO     | zombie collector waiting for pid 1115216
[2025-10-09 21:55:36] 2025-10-09 19:54:34,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 21:55:36] 2025-10-09 19:54:34,014 | INFO     | collected zombie processes
[2025-10-09 21:55:36] 2025-10-09 19:54:34,014 | INFO     | will attempt to kill all subprocesses of pid=1115216
[2025-10-09 21:55:36] 2025-10-09 19:54:34,084 | INFO     | process IDs to be killed: [1115216] (in reverse order)
[2025-10-09 21:55:36] 2025-10-09 19:54:34,119 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 21:55:36] 2025-10-09 19:54:34,119 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 21:55:36] 2025-10-09 19:54:34,121 | INFO     | did not find any defunct processes belonging to 1115216
[2025-10-09 21:55:36] 2025-10-09 19:54:34,123 | INFO     | did not find any defunct processes belonging to 1115216
[2025-10-09 21:55:36] 2025-10-09 19:54:34,123 | INFO     | ready for new job
[2025-10-09 21:55:36] 2025-10-09 19:54:34,123 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 21:55:36] 2025-10-09 19:54:34,124 | INFO     | ***************************************
[2025-10-09 21:55:36] 2025-10-09 19:54:34,124 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 21:55:36] 2025-10-09 19:54:34,124 | INFO     | ***************************************
[2025-10-09 21:55:36] 2025-10-09 19:54:34,124 | INFO     | 
[2025-10-09 21:55:36] 2025-10-09 19:54:34,125 | INFO     | architecture information:
[2025-10-09 21:55:36] 2025-10-09 19:54:34,125 | INFO     | executing command: cat /etc/os-release
[2025-10-09 21:55:36] 2025-10-09 19:54:34,137 | INFO     | cat /etc/os-release:
[2025-10-09 21:55:36] NAME="CentOS Linux"
[2025-10-09 21:55:36] VERSION="7 (Core)"
[2025-10-09 21:55:36] ID="centos"
[2025-10-09 21:55:36] ID_LIKE="rhel fedora"
[2025-10-09 21:55:36] VERSION_ID="7"
[2025-10-09 21:55:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 21:55:36] ANSI_COLOR="0;31"
[2025-10-09 21:55:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 21:55:36] HOME_URL="https://www.centos.org/"
[2025-10-09 21:55:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 21:55:36] 
[2025-10-09 21:55:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 21:55:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 21:55:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 21:55:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 21:55:36] 
[2025-10-09 21:55:36] 2025-10-09 19:54:34,137 | INFO     | ***************************************
[2025-10-09 21:55:36] 2025-10-09 19:54:34,639 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-10-09 21:55:36] 2025-10-09 19:54:34,667 | INFO     | sufficient remaining disk space (1765687689216 B)
[2025-10-09 21:55:36] 2025-10-09 19:54:34,667 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 21:55:36] 2025-10-09 19:54:34,667 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 21:55:36] 2025-10-09 19:54:34,667 | INFO     | update_server=False
[2025-10-09 21:55:36] 2025-10-09 19:54:34,667 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 21:55:36] 2025-10-09 19:54:34,667 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 21:55:36] 2025-10-09 19:54:34,709 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 21:55:36] 2025-10-09 19:54:34,709 | INFO     | aborting loop
[2025-10-09 21:55:36] 2025-10-09 19:54:34,771 | INFO     | all data control threads have been joined
[2025-10-09 21:55:36] 2025-10-09 19:54:35,419 | INFO     | all payload control threads have been joined
[2025-10-09 21:55:36] 2025-10-09 19:54:35,672 | INFO     | [job] retrieve thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:35,673 | INFO     | [job] queue monitor thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:35,715 | INFO     | [job] job monitor thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:35,743 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 21:55:36] 2025-10-09 19:54:35,775 | INFO     | [data] control thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:36,134 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 21:55:36] 2025-10-09 19:54:36,230 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:36,315 | INFO     | all job control threads have been joined
[2025-10-09 21:55:36] 2025-10-09 19:54:36,425 | INFO     | [payload] control thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:36,459 | INFO     | [payload] failed_post thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:36,531 | INFO     | [data] copytool_in thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:36,779 | INFO     | [job] validate thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:36,898 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:36,907 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:37,055 | INFO     | [payload] validate_post thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:37,320 | INFO     | [job] control thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:37,749 | INFO     | [data] copytool_out thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:40,141 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:54:45,330 | INFO     | job.realtimelogging is not enabled
[2025-10-09 21:55:36] 2025-10-09 19:54:46,336 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 21:55:36] 2025-10-09 19:55:05,405 | INFO     | PID=1108572 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 21:55:36] 2025-10-09 19:55:05,405 | INFO     | .. there are 5 such processes running
[2025-10-09 21:55:36] 2025-10-09 19:55:05,405 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 21:55:36] 2025-10-09 19:55:05,405 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 21:55:36] 2025-10-09 19:55:05,405 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 21:55:36] 2025-10-09 19:55:31,149 | INFO     | [monitor] cgroup control has ended
[2025-10-09 21:55:36] 2025-10-09 19:55:31,534 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133707219793728)>', '<ExcThread(monitor, started 133706735929088)>']
[2025-10-09 21:55:36] 2025-10-09 19:55:31,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 21:55:36] 2025-10-09 19:55:31,539 | INFO     | [monitor] control thread has ended
[2025-10-09 21:55:36] 2025-10-09 19:55:36,559 | INFO     | all workflow threads have been joined
[2025-10-09 21:55:36] 2025-10-09 19:55:36,559 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 21:55:36] 2025-10-09 19:55:36,560 | INFO     | traces error code: 0
[2025-10-09 21:55:36] 2025-10-09 19:55:36,560 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 21:55:36] 2025-10-09 19:55:36,613 [wrapper] ==== pilot stdout END ====
[2025-10-09 21:55:36] 2025-10-09 19:55:36,615 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 21:55:36] 2025-10-09 19:55:36,618 [wrapper] pilotpid: 1108572
[2025-10-09 21:55:36] 2025-10-09 19:55:36,619 [wrapper] Pilot exit status: 0
[2025-10-09 21:55:36] 2025-10-09 19:55:36,626 [wrapper] pandaids: 6837337717
[2025-10-09 21:55:36] 2025-10-09 19:55:36,662 [wrapper] cleanup supervisor_pilot 1215299 1108573
[2025-10-09 21:55:36] 2025-10-09 19:55:36,664 [wrapper] Test setup, not cleaning
[2025-10-09 21:55:36] 2025-10-09 19:55:36,665 [wrapper] apfmon messages muted
[2025-10-09 21:55:36] 2025-10-09 19:55:36,667 [wrapper] ==== wrapper stdout END ====
[2025-10-09 21:55:36] 2025-10-09 19:55:36,670 [wrapper] ==== wrapper stderr END ====
[2025-10-09 21:55:36]  *** Error codes and diagnostics ***
[2025-10-09 21:55:36]     "exeErrorCode": 0,
[2025-10-09 21:55:36]     "exeErrorDiag": "",
[2025-10-09 21:55:36]     "pilotErrorCode": 0,
[2025-10-09 21:55:36]     "pilotErrorDiag": "",
[2025-10-09 21:55:36]  *** Listing of results directory ***
[2025-10-09 21:55:36] total 410972
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc    557409 Oct  9 14:21 pilot3.tar.gz
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc      5112 Oct  9 14:27 queuedata.json
[2025-10-09 21:55:36] -rwx------ 1 boinc boinc     36292 Oct  9 14:27 runpilot2-wrapper.sh
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc       100 Oct  9 20:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 21:55:36] -rwxr-xr-x 1 boinc boinc      7986 Oct  9 20:31 run_atlas
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc       105 Oct  9 20:31 job.xml
[2025-10-09 21:55:36] -rw-r--r-- 2 boinc boinc 221525954 Oct  9 20:31 EVNT.46676267._000716.pool.root.1
[2025-10-09 21:55:36] -rw-r--r-- 2 boinc boinc     15120 Oct  9 20:31 start_atlas.sh
[2025-10-09 21:55:36] drwxrwx--x 2 boinc boinc      4096 Oct  9 20:31 shared
[2025-10-09 21:55:36] -rw-r--r-- 2 boinc boinc    569683 Oct  9 20:31 input.tar.gz
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc         0 Oct  9 20:31 boinc_lockfile
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc      2549 Oct  9 20:31 pandaJob.out
[2025-10-09 21:55:36] -rw------- 1 boinc boinc    975446 Oct  9 20:31 agis_schedconf.cvmfs.json
[2025-10-09 21:55:36] -rw------- 1 boinc boinc   1560401 Oct  9 20:31 agis_ddmendpoints.agis.ALL.json
[2025-10-09 21:55:36] drwx------ 5 boinc boinc      4096 Oct  9 20:31 pilot3
[2025-10-09 21:55:36] -rw------- 1 boinc boinc 193373497 Oct  9 21:54 HITS.46676269._017285.pool.root.1
[2025-10-09 21:55:36] -rw------- 1 boinc boinc      1025 Oct  9 21:54 memory_monitor_summary.json
[2025-10-09 21:55:36] -rw------- 1 boinc boinc    264842 Oct  9 21:54 log.46676269._017285.job.log.tgz.1
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc       529 Oct  9 21:54 boinc_task_state.xml
[2025-10-09 21:55:36] -rw------- 1 boinc boinc      7781 Oct  9 21:54 heartbeat.json
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc      9520 Oct  9 21:55 init_data.xml
[2025-10-09 21:55:36] -rw------- 1 boinc boinc        95 Oct  9 21:55 pilot_heartbeat.json
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc      8192 Oct  9 21:55 boinc_mmap_file
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc        27 Oct  9 21:55 wrapper_checkpoint.txt
[2025-10-09 21:55:36] -rw------- 1 boinc boinc      4904 Oct  9 21:55 pilotlog.txt
[2025-10-09 21:55:36] -rw------- 1 boinc boinc    751776 Oct  9 21:55 log.46676269._017285.job.log.1
[2025-10-09 21:55:36] -rw------- 1 boinc boinc       357 Oct  9 21:55 output.list
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc       620 Oct  9 21:55 runtime_log
[2025-10-09 21:55:36] -rw------- 1 boinc boinc   1034240 Oct  9 21:55 result.tar.gz
[2025-10-09 21:55:36] -rw------- 1 boinc boinc       657 Oct  9 21:55 yZOKDmdv4Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZqZNDm4dhKIm.diag
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc      8841 Oct  9 21:55 runtime_log.err
[2025-10-09 21:55:36] -rw-r--r-- 1 boinc boinc     22236 Oct  9 21:55 stderr.txt
[2025-10-09 21:55:36] HITS file was successfully produced:
[2025-10-09 21:55:36] -rw------- 1 boinc boinc 193373497 Oct  9 21:54 shared/HITS.pool.root.1
[2025-10-09 21:55:36]  *** Contents of shared directory: ***
[2025-10-09 21:55:36] total 406772
[2025-10-09 21:55:36] -rw-r--r-- 2 boinc boinc 221525954 Oct  9 20:31 ATLAS.root_0
[2025-10-09 21:55:36] -rw-r--r-- 2 boinc boinc     15120 Oct  9 20:31 start_atlas.sh
[2025-10-09 21:55:36] -rw-r--r-- 2 boinc boinc    569683 Oct  9 20:31 input.tar.gz
[2025-10-09 21:55:36] -rw------- 1 boinc boinc 193373497 Oct  9 21:54 HITS.pool.root.1
[2025-10-09 21:55:36] -rw------- 1 boinc boinc   1034240 Oct  9 21:55 result.tar.gz
21:55:37 (1104725): run_atlas exited; CPU time 19164.149279
21:55:37 (1104725): called boinc_finish(0)

</stderr_txt>
]]>

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