Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:09:55 (1694622): wrapper (7.7.26015): starting
23:09:55 (1694622): wrapper: running run_atlas (--nthreads 3)
[2025-10-09 23:09:55] Arguments: --nthreads 3
[2025-10-09 23:09:55] Threads: 3
[2025-10-09 23:09:55] Checking for CVMFS
[2025-10-09 23:09:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 23:09:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 23:09:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 23:09:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 23:09:55] 2.9.2.0 1568863 408 61336 151522 3 57 27850113 36864001 0 130560 0 328165 99.988 12185 796 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-09 23:09:55] CVMFS is ok
[2025-10-09 23:09:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 23:09:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 23:09:55] Further information can be found at the LHC@home message board.
[2025-10-09 23:09:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 23:09:55] Checking for apptainer binary...
[2025-10-09 23:09:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 23:09:55] Running /usr/bin/apptainer --version
[2025-10-09 23:09:55] apptainer version 1.4.1-1.1
[2025-10-09 23:09:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 23:09:55] madmaxA273
[2025-10-09 23:09:55] apptainer works
[2025-10-09 23:09:55] Set ATHENA_PROC_NUMBER=3
[2025-10-09 23:09:55] Set ATHENA_CORE_NUMBER=3
[2025-10-09 23:09:55] Starting ATLAS job with PandaID=6837336590
[2025-10-09 23:09:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 00:35:12]  *** The last 200 lines of the pilot log: ***
[2025-10-10 00:35:12] 2025-10-09 22:34:38,875 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 00:35:12] 2025-10-09 22:34:38,875 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 00:35:12] 2025-10-09 22:34:38,875 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 00:35:12] 2025-10-09 22:34:38,875 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 00:35:12] 2025-10-09 22:34:38,875 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 00:35:12] 2025-10-09 22:34:38,875 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 00:35:12] 2025-10-09 22:34:38,875 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 00:35:12] 2025-10-09 22:34:38,875 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 00:35:12] 2025-10-09 22:34:38,875 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 00:35:12] 2025-10-09 22:34:38,875 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 00:35:12] 2025-10-09 22:34:38,875 | INFO     | job 6837336590 has completed (purged errors)
[2025-10-10 00:35:12] 2025-10-09 22:34:38,875 | INFO     | overall cleanup function is called
[2025-10-10 00:35:12] 2025-10-09 22:34:39,882 | INFO     | --- collectZombieJob: --- 10, [1704769]
[2025-10-10 00:35:12] 2025-10-09 22:34:39,882 | INFO     | zombie collector waiting for pid 1704769
[2025-10-10 00:35:12] 2025-10-09 22:34:39,882 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 00:35:12] 2025-10-09 22:34:39,882 | INFO     | collected zombie processes
[2025-10-10 00:35:12] 2025-10-09 22:34:39,882 | INFO     | will attempt to kill all subprocesses of pid=1704769
[2025-10-10 00:35:12] 2025-10-09 22:34:39,924 | INFO     | process IDs to be killed: [1704769] (in reverse order)
[2025-10-10 00:35:12] 2025-10-09 22:34:39,947 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 00:35:12] 2025-10-09 22:34:39,947 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 00:35:12] 2025-10-09 22:34:39,948 | INFO     | did not find any defunct processes belonging to 1704769
[2025-10-10 00:35:12] 2025-10-09 22:34:39,949 | INFO     | did not find any defunct processes belonging to 1704769
[2025-10-10 00:35:12] 2025-10-09 22:34:39,949 | INFO     | ready for new job
[2025-10-10 00:35:12] 2025-10-09 22:34:39,949 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 00:35:12] 2025-10-09 22:34:39,950 | INFO     | ***************************************
[2025-10-10 00:35:12] 2025-10-09 22:34:39,950 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 00:35:12] 2025-10-09 22:34:39,950 | INFO     | ***************************************
[2025-10-10 00:35:12] 2025-10-09 22:34:39,950 | INFO     | 
[2025-10-10 00:35:12] 2025-10-09 22:34:39,951 | INFO     | architecture information:
[2025-10-10 00:35:12] 2025-10-09 22:34:39,951 | INFO     | executing command: cat /etc/os-release
[2025-10-10 00:35:12] 2025-10-09 22:34:39,959 | INFO     | cat /etc/os-release:
[2025-10-10 00:35:12] NAME="CentOS Linux"
[2025-10-10 00:35:12] VERSION="7 (Core)"
[2025-10-10 00:35:12] ID="centos"
[2025-10-10 00:35:12] ID_LIKE="rhel fedora"
[2025-10-10 00:35:12] VERSION_ID="7"
[2025-10-10 00:35:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 00:35:12] ANSI_COLOR="0;31"
[2025-10-10 00:35:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 00:35:12] HOME_URL="https://www.centos.org/"
[2025-10-10 00:35:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 00:35:12] 
[2025-10-10 00:35:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 00:35:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 00:35:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 00:35:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 00:35:12] 
[2025-10-10 00:35:12] 2025-10-09 22:34:39,959 | INFO     | ***************************************
[2025-10-10 00:35:12] 2025-10-09 22:34:40,462 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-10 00:35:12] 2025-10-09 22:34:40,474 | INFO     | sufficient remaining disk space (332434243584 B)
[2025-10-10 00:35:12] 2025-10-09 22:34:40,474 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 00:35:12] 2025-10-09 22:34:40,475 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 00:35:12] 2025-10-09 22:34:40,475 | INFO     | update_server=False
[2025-10-10 00:35:12] 2025-10-09 22:34:40,475 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 00:35:12] 2025-10-09 22:34:40,475 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-10 00:35:12] 2025-10-09 22:34:40,475 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 00:35:12] 2025-10-09 22:34:40,475 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 00:35:12] 2025-10-09 22:34:40,475 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 00:35:12] 2025-10-09 22:34:40,475 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 00:35:12] 2025-10-09 22:34:40,475 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 00:35:12] 2025-10-09 22:34:40,673 | INFO     | all payload control threads have been joined
[2025-10-10 00:35:12] 2025-10-09 22:34:40,885 | INFO     | all data control threads have been joined
[2025-10-10 00:35:12] 2025-10-09 22:34:40,926 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 00:35:12] 2025-10-09 22:34:40,927 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 00:35:12] 2025-10-09 22:34:40,927 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 00:35:12] 2025-10-09 22:34:40,927 | INFO     | will abort loop
[2025-10-10 00:35:12] 2025-10-09 22:34:41,480 | INFO     | [job] retrieve thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:41,480 | INFO     | [job] queue monitor thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:41,678 | INFO     | [payload] control thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:41,747 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 00:35:12] 2025-10-09 22:34:41,761 | INFO     | all job control threads have been joined
[2025-10-10 00:35:12] 2025-10-09 22:34:41,891 | INFO     | [data] control thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:41,932 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:41,933 | INFO     | [job] job monitor thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:42,046 | INFO     | [data] copytool_in thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:42,089 | INFO     | [payload] failed_post thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:42,463 | INFO     | [payload] validate_post thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:42,550 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:42,554 | INFO     | [job] validate thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:42,729 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:42,766 | INFO     | [job] control thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:43,753 | INFO     | [data] copytool_out thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:44,481 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:34:51,122 | INFO     | job.realtimelogging is not enabled
[2025-10-10 00:35:12] 2025-10-09 22:34:52,128 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 00:35:12] 2025-10-09 22:35:06,671 | INFO     | [monitor] cgroup control has ended
[2025-10-10 00:35:12] 2025-10-09 22:35:07,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140049565034304)>', '<ExcThread(monitor, started 140048909444864)>']
[2025-10-10 00:35:12] 2025-10-09 22:35:07,617 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 00:35:12] 2025-10-09 22:35:07,618 | INFO     | [monitor] control thread has ended
[2025-10-10 00:35:12] 2025-10-09 22:35:12,309 | INFO     | all workflow threads have been joined
[2025-10-10 00:35:12] 2025-10-09 22:35:12,309 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 00:35:12] 2025-10-09 22:35:12,310 | INFO     | traces error code: 0
[2025-10-10 00:35:12] 2025-10-09 22:35:12,310 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 00:35:12] 2025-10-09 22:35:12,359 [wrapper] ==== pilot stdout END ====
[2025-10-10 00:35:12] 2025-10-09 22:35:12,361 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 00:35:12] 2025-10-09 22:35:12,364 [wrapper] pilotpid: 1698338
[2025-10-10 00:35:12] 2025-10-09 22:35:12,366 [wrapper] Pilot exit status: 0
[2025-10-10 00:35:12] 2025-10-09 22:35:12,373 [wrapper] pandaids: 6837336590
[2025-10-10 00:35:12] 2025-10-09 22:35:12,389 [wrapper] cleanup supervisor_pilot 1717104 1698339
[2025-10-10 00:35:12] 2025-10-09 22:35:12,391 [wrapper] Test setup, not cleaning
[2025-10-10 00:35:12] 2025-10-09 22:35:12,394 [wrapper] apfmon messages muted
[2025-10-10 00:35:12] 2025-10-09 22:35:12,396 [wrapper] ==== wrapper stdout END ====
[2025-10-10 00:35:12] 2025-10-09 22:35:12,398 [wrapper] ==== wrapper stderr END ====
[2025-10-10 00:35:12]  *** Error codes and diagnostics ***
[2025-10-10 00:35:12]     "exeErrorCode": 0,
[2025-10-10 00:35:12]     "exeErrorDiag": "",
[2025-10-10 00:35:12]     "pilotErrorCode": 0,
[2025-10-10 00:35:12]     "pilotErrorDiag": "",
[2025-10-10 00:35:12]  *** Listing of results directory ***
[2025-10-10 00:35:12] total 420584
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc    557409 Oct  9 13:26 pilot3.tar.gz
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc      5112 Oct  9 13:55 queuedata.json
[2025-10-10 00:35:12] -rwx------ 1 boinc boinc     36292 Oct  9 13:55 runpilot2-wrapper.sh
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc       100 Oct  9 23:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 00:35:12] -rwxr-xr-x 1 boinc boinc      7986 Oct  9 23:09 run_atlas
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc       105 Oct  9 23:09 job.xml
[2025-10-10 00:35:12] -rw-r--r-- 2 boinc boinc 224256682 Oct  9 23:09 EVNT.46676267._000676.pool.root.1
[2025-10-10 00:35:12] -rw-r--r-- 2 boinc boinc    569679 Oct  9 23:09 input.tar.gz
[2025-10-10 00:35:12] -rw-r--r-- 2 boinc boinc     15120 Oct  9 23:09 start_atlas.sh
[2025-10-10 00:35:12] drwxrwx--x 2 boinc boinc      4096 Oct  9 23:09 shared
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc         0 Oct  9 23:09 boinc_setup_complete
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc      6443 Oct  9 23:09 init_data.xml
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc         0 Oct  9 23:09 boinc_lockfile
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc      2549 Oct  9 23:09 pandaJob.out
[2025-10-10 00:35:12] -rw------- 1 boinc boinc    975454 Oct  9 23:10 agis_schedconf.cvmfs.json
[2025-10-10 00:35:12] -rw------- 1 boinc boinc   1560401 Oct  9 23:10 agis_ddmendpoints.agis.ALL.json
[2025-10-10 00:35:12] drwx------ 5 boinc boinc      4096 Oct  9 23:10 pilot3
[2025-10-10 00:35:12] -rw------- 1 boinc boinc 200557496 Oct 10 00:34 HITS.46676269._016406.pool.root.1
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc       529 Oct 10 00:34 boinc_task_state.xml
[2025-10-10 00:35:12] -rw------- 1 boinc boinc        95 Oct 10 00:34 pilot_heartbeat.json
[2025-10-10 00:35:12] -rw------- 1 boinc boinc      1023 Oct 10 00:34 memory_monitor_summary.json
[2025-10-10 00:35:12] -rw------- 1 boinc boinc    244690 Oct 10 00:34 log.46676269._016406.job.log.tgz.1
[2025-10-10 00:35:12] -rw------- 1 boinc boinc      7769 Oct 10 00:34 heartbeat.json
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc        27 Oct 10 00:35 wrapper_checkpoint.txt
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc      8192 Oct 10 00:35 boinc_mmap_file
[2025-10-10 00:35:12] -rw------- 1 boinc boinc      4814 Oct 10 00:35 pilotlog.txt
[2025-10-10 00:35:12] -rw------- 1 boinc boinc    744111 Oct 10 00:35 log.46676269._016406.job.log.1
[2025-10-10 00:35:12] -rw------- 1 boinc boinc       357 Oct 10 00:35 output.list
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc       620 Oct 10 00:35 runtime_log
[2025-10-10 00:35:12] -rw------- 1 boinc boinc   1003520 Oct 10 00:35 result.tar.gz
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc      8797 Oct 10 00:35 runtime_log.err
[2025-10-10 00:35:12] -rw------- 1 boinc boinc       662 Oct 10 00:35 IdmMDmQQ4Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVhZNDmPrx9pm.diag
[2025-10-10 00:35:12] -rw-r--r-- 1 boinc boinc     12075 Oct 10 00:35 stderr.txt
[2025-10-10 00:35:12] HITS file was successfully produced:
[2025-10-10 00:35:12] -rw------- 1 boinc boinc 200557496 Oct 10 00:34 shared/HITS.pool.root.1
[2025-10-10 00:35:12]  *** Contents of shared directory: ***
[2025-10-10 00:35:12] total 416428
[2025-10-10 00:35:12] -rw-r--r-- 2 boinc boinc 224256682 Oct  9 23:09 ATLAS.root_0
[2025-10-10 00:35:12] -rw-r--r-- 2 boinc boinc    569679 Oct  9 23:09 input.tar.gz
[2025-10-10 00:35:12] -rw-r--r-- 2 boinc boinc     15120 Oct  9 23:09 start_atlas.sh
[2025-10-10 00:35:12] -rw------- 1 boinc boinc 200557496 Oct 10 00:34 HITS.pool.root.1
[2025-10-10 00:35:12] -rw------- 1 boinc boinc   1003520 Oct 10 00:35 result.tar.gz
00:35:13 (1694622): run_atlas exited; CPU time 14592.968312
00:35:13 (1694622): called boinc_finish(0)

</stderr_txt>
]]>

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