Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:49:55 (2159636): wrapper (7.7.26015): starting
13:49:55 (2159636): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 13:49:55] Arguments: --nthreads 8
[2025-10-09 13:49:55] Threads: 8
[2025-10-09 13:49:55] Checking for CVMFS
[2025-10-09 13:49:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 13:49:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 13:49:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 13:49:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 13:49:56] 2.13.2.0 709547 73385 414764 151518 3 373 30744423 32935937 29954 16776704 0 507438927 99.701 381579750 17455 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 13:49:56] CVMFS is ok
[2025-10-09 13:49:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 13:49:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 13:49:56] Further information can be found at the LHC@home message board.
[2025-10-09 13:49:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 13:49:56] Checking for apptainer binary...
[2025-10-09 13:49:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 13:49:56] Running /usr/bin/apptainer --version
[2025-10-09 13:49:56] apptainer version 1.4.3-1.el9
[2025-10-09 13:49:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 13:50:16] c7-2-37.aglt2.org
[2025-10-09 13:50:16] apptainer works
[2025-10-09 13:50:16] Set ATHENA_PROC_NUMBER=8
[2025-10-09 13:50:16] Set ATHENA_CORE_NUMBER=8
[2025-10-09 13:50:16] Starting ATLAS job with PandaID=6837334397
[2025-10-09 13:50:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:40:08 (2159636): BOINC client no longer exists - exiting
15:40:08 (2159636): timer handler: client dead, exiting
15:46:32 (3271946): wrapper (7.7.26015): starting
15:46:32 (3271946): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 15:46:32] Arguments: --nthreads 8
[2025-10-09 15:46:32] Threads: 8
[2025-10-09 15:46:32] This job has been restarted, cleaning up previous attempt
[2025-10-09 15:46:32] Checking for CVMFS
[2025-10-09 15:46:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 15:46:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 15:46:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 15:46:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 15:46:33] 2.13.2.0 709547 73501 419316 151521 2 612 23176925 32935937 26129 16776704 0 508357116 99.700 382639175 17464 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 15:46:33] CVMFS is ok
[2025-10-09 15:46:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 15:46:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 15:46:33] Further information can be found at the LHC@home message board.
[2025-10-09 15:46:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 15:46:33] Checking for apptainer binary...
[2025-10-09 15:46:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 15:46:33] Running /usr/bin/apptainer --version
[2025-10-09 15:46:33] apptainer version 1.4.3-1.el9
[2025-10-09 15:46:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 15:46:33] c7-2-37.aglt2.org
[2025-10-09 15:46:33] apptainer works
[2025-10-09 15:46:33] Set ATHENA_PROC_NUMBER=8
[2025-10-09 15:46:33] Set ATHENA_CORE_NUMBER=8
[2025-10-09 15:46:33] Starting ATLAS job with PandaID=6837334397
[2025-10-09 15:46:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 18:51:29]  *** The last 200 lines of the pilot log: ***
[2025-10-09 18:51:29] 2025-10-09 22:50:54,251 | INFO     | time since job start (11051s) is within the limit (172800.0s)
[2025-10-09 18:51:29] 2025-10-09 22:50:55,595 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-09 18:51:29] 2025-10-09 22:50:55,632 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3269.7845624999995
[2025-10-09 18:51:29] 2025-10-09 22:50:55,653 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837334397/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 18:51:29] 2025-10-09 22:50:55,654 | INFO     | extracted standard info from prmon json
[2025-10-09 18:51:29] 2025-10-09 22:50:55,654 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 18:51:29] 2025-10-09 22:50:55,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 18:51:29] 2025-10-09 22:50:55,655 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 18:51:29] 2025-10-09 22:50:55,655 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 18:51:29] 2025-10-09 22:50:55,657 | INFO     | fitting pss+swap vs Time
[2025-10-09 18:51:29] 2025-10-09 22:50:55,657 | INFO     | sum of square deviations: 1838656146.950275
[2025-10-09 18:51:29] 2025-10-09 22:50:55,658 | INFO     | sum of deviations: 21564191681.884
[2025-10-09 18:51:29] 2025-10-09 22:50:55,658 | INFO     | mean x: 1760044723.0165746
[2025-10-09 18:51:29] 2025-10-09 22:50:55,658 | INFO     | mean y: 2319517.0386740332
[2025-10-09 18:51:29] 2025-10-09 22:50:55,658 | INFO     | -- intersect: -20639898898.172318
[2025-10-09 18:51:29] 2025-10-09 22:50:55,659 | INFO     | intersect: -20639898898.172318
[2025-10-09 18:51:29] 2025-10-09 22:50:55,659 | INFO     | chi2: 1.2709364656276103
[2025-10-09 18:51:29] 2025-10-09 22:50:55,659 | INFO     | sum of square deviations: 1690449631.9488623
[2025-10-09 18:51:29] 2025-10-09 22:50:55,660 | INFO     | sum of deviations: 21555548638.01704
[2025-10-09 18:51:29] 2025-10-09 22:50:55,660 | INFO     | mean x: 1760044570.5170455
[2025-10-09 18:51:29] 2025-10-09 22:50:55,660 | INFO     | mean y: 2319491.4943181816
[2025-10-09 18:51:29] 2025-10-09 22:50:55,660 | INFO     | -- intersect: -22440659954.820038
[2025-10-09 18:51:29] 2025-10-09 22:50:55,660 | INFO     | intersect: -22440659954.820038
[2025-10-09 18:51:29] 2025-10-09 22:50:55,660 | INFO     | chi2: 1.269205021787815
[2025-10-09 18:51:29] 2025-10-09 22:50:55,660 | INFO     | current chi2=1.269205021787815 (change=0.13623370535208235 %)
[2025-10-09 18:51:29] 2025-10-09 22:50:55,660 | INFO     | right removable region: 175
[2025-10-09 18:51:29] 2025-10-09 22:50:55,660 | INFO     | sum of square deviations: 1690447801.9488623
[2025-10-09 18:51:29] 2025-10-09 22:50:55,661 | INFO     | sum of deviations: -2530503770.1647725
[2025-10-09 18:51:29] 2025-10-09 22:50:55,661 | INFO     | mean x: 1760044875.5170455
[2025-10-09 18:51:29] 2025-10-09 22:50:55,661 | INFO     | mean y: 2344037.221590909
[2025-10-09 18:51:29] 2025-10-09 22:50:55,661 | INFO     | -- intersect: 2637030649.857858
[2025-10-09 18:51:29] 2025-10-09 22:50:55,661 | INFO     | intersect: 2637030649.857858
[2025-10-09 18:51:29] 2025-10-09 22:50:55,662 | INFO     | chi2: 0.02043514586170269
[2025-10-09 18:51:29] 2025-10-09 22:50:55,662 | INFO     | current chi2=0.02043514586170269 (change=98.39211900717542 %)
[2025-10-09 18:51:29] 2025-10-09 22:50:55,662 | INFO     | sum of square deviations: 1550425656.9473705
[2025-10-09 18:51:29] 2025-10-09 22:50:55,663 | INFO     | sum of deviations: -3443574198.4736843
[2025-10-09 18:51:29] 2025-10-09 22:50:55,663 | INFO     | mean x: 1760045028.0175438
[2025-10-09 18:51:29] 2025-10-09 22:50:55,663 | INFO     | mean y: 2345016.8245614036
[2025-10-09 18:51:29] 2025-10-09 22:50:55,663 | INFO     | -- intersect: 3911494494.2437444
[2025-10-09 18:51:29] 2025-10-09 22:50:55,663 | INFO     | intersect: 3911494494.2437444
[2025-10-09 18:51:29] 2025-10-09 22:50:55,663 | INFO     | chi2: 0.0174206463621614
[2025-10-09 18:51:29] 2025-10-09 22:50:55,663 | INFO     | current chi2=0.0174206463621614 (change=14.751543835029507 %)
[2025-10-09 18:51:29] 2025-10-09 22:50:55,663 | INFO     | left removable region: 20
[2025-10-09 18:51:29] 2025-10-09 22:50:55,663 | INFO     | sum of square deviations: 1154659364.9419298
[2025-10-09 18:51:29] 2025-10-09 22:50:55,664 | INFO     | sum of deviations: -1303501605.0774193
[2025-10-09 18:51:29] 2025-10-09 22:50:55,664 | INFO     | mean x: 1760045150.0193548
[2025-10-09 18:51:29] 2025-10-09 22:50:55,664 | INFO     | mean y: 2343588.0258064517
[2025-10-09 18:51:29] 2025-10-09 22:50:55,664 | INFO     | -- intersect: 1989268691.4084282
[2025-10-09 18:51:29] 2025-10-09 22:50:55,664 | INFO     | intersect: 1989268691.4084282
[2025-10-09 18:51:29] 2025-10-09 22:50:55,665 | INFO     | chi2: 0.013546185926652327
[2025-10-09 18:51:29] 2025-10-09 22:50:55,665 | INFO     | -- intersect: 1989268691.4084282
[2025-10-09 18:51:29] 2025-10-09 22:50:55,665 | INFO     | current memory leak: -1.13 B/s (using 155 data points, chi2=0.01)
[2025-10-09 18:51:29] 2025-10-09 22:50:55,665 | INFO     | could have reported an average CPU frequency of 3227 MHz (10 samples)
[2025-10-09 18:51:29] 2025-10-09 22:50:55,665 | INFO     | ..............................
[2025-10-09 18:51:29] 2025-10-09 22:50:55,665 | INFO     | . Timing measurements:
[2025-10-09 18:51:29] 2025-10-09 22:50:55,665 | INFO     | . get job = 0 s
[2025-10-09 18:51:29] 2025-10-09 22:50:55,666 | INFO     | . initial setup = 1 s
[2025-10-09 18:51:29] 2025-10-09 22:50:55,666 | INFO     | . payload setup = 6 s
[2025-10-09 18:51:29] 2025-10-09 22:50:55,666 | INFO     | . stage-in = 0 s
[2025-10-09 18:51:29] 2025-10-09 22:50:55,666 | INFO     | . payload execution = 11017 s
[2025-10-09 18:51:29] 2025-10-09 22:50:55,666 | INFO     | . stage-out = 2 s
[2025-10-09 18:51:29] 2025-10-09 22:50:55,666 | INFO     | . log creation = 0 s
[2025-10-09 18:51:29] 2025-10-09 22:50:55,666 | INFO     | ..............................
[2025-10-09 18:51:29] 2025-10-09 22:50:55,748 | INFO     | 
[2025-10-09 18:51:29] 2025-10-09 22:50:55,749 | INFO     | job summary report
[2025-10-09 18:51:29] 2025-10-09 22:50:55,749 | INFO     | --------------------------------------------------
[2025-10-09 18:51:29] 2025-10-09 22:50:55,749 | INFO     | PanDA job id: 6837334397
[2025-10-09 18:51:29] 2025-10-09 22:50:55,749 | INFO     | task id: 46676269
[2025-10-09 18:51:29] 2025-10-09 22:50:55,749 | INFO     | errors: (none)
[2025-10-09 18:51:29] 2025-10-09 22:50:55,749 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 18:51:29] 2025-10-09 22:50:55,749 | INFO     | pilot state: finished 
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | transexitcode: 0
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | exeerrorcode: 0
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | exeerrordiag: 
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | exitcode: 0
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | exitmsg: OK
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | cpuconsumptiontime: 31226 s
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | nevents: 400
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | neventsw: 0
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | pid: 3334635
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | pgrp: 3334635
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | corecount: 8
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | event service: False
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | sizes: {0: 2348855, 5: 2349117, 11: 2349173, 11027: 2378215, 11030: 2387213, 11031: 2387269, 11036: 2387591}
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | --------------------------------------------------
[2025-10-09 18:51:29] 2025-10-09 22:50:55,750 | INFO     | 
[2025-10-09 18:51:29] 2025-10-09 22:50:55,751 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-09 18:51:29] 2025-10-09 22:50:55,785 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,786 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,786 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,786 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,786 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,786 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,786 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,786 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,786 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,786 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,786 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,786 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,786 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,787 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,787 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,787 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,787 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,787 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 18:51:29] 2025-10-09 22:50:55,787 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,787 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 18:51:29] 2025-10-09 22:50:55,787 | INFO     | job 6837334397 has completed (purged errors)
[2025-10-09 18:51:29] 2025-10-09 22:50:55,787 | INFO     | overall cleanup function is called
[2025-10-09 18:51:29] 2025-10-09 22:50:56,026 | INFO     | PID=3294121 has CPU usage=17.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-09 18:51:29] 2025-10-09 22:50:56,026 | INFO     | .. there are 36 such processes running
[2025-10-09 18:51:29] 2025-10-09 22:50:56,803 | INFO     | --- collectZombieJob: --- 10, [3334635]
[2025-10-09 18:51:29] 2025-10-09 22:50:56,803 | INFO     | zombie collector waiting for pid 3334635
[2025-10-09 18:51:29] 2025-10-09 22:50:56,803 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 18:51:29] 2025-10-09 22:50:56,804 | INFO     | collected zombie processes
[2025-10-09 18:51:29] 2025-10-09 22:50:56,804 | INFO     | will attempt to kill all subprocesses of pid=3334635
[2025-10-09 18:51:29] 2025-10-09 22:50:57,330 | INFO     | process IDs to be killed: [3334635] (in reverse order)
[2025-10-09 18:51:29] 2025-10-09 22:50:57,494 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 18:51:29] 2025-10-09 22:50:57,495 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 18:51:29] 2025-10-09 22:50:57,517 | INFO     | did not find any defunct processes belonging to 3334635
[2025-10-09 18:51:29] 2025-10-09 22:50:57,542 | INFO     | did not find any defunct processes belonging to 3334635
[2025-10-09 18:51:29] 2025-10-09 22:50:57,542 | INFO     | ready for new job
[2025-10-09 18:51:29] 2025-10-09 22:50:57,542 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 18:51:29] 2025-10-09 22:50:57,544 | INFO     | ***************************************
[2025-10-09 18:51:29] 2025-10-09 22:50:57,544 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 18:51:29] 2025-10-09 22:50:57,544 | INFO     | ***************************************
[2025-10-09 18:51:29] 2025-10-09 22:50:57,544 | INFO     | 
[2025-10-09 18:51:29] 2025-10-09 22:50:57,562 | INFO     | architecture information:
[2025-10-09 18:51:29] 2025-10-09 22:50:57,563 | INFO     | executing command: cat /etc/os-release
[2025-10-09 18:51:29] 2025-10-09 22:50:57,581 | INFO     | cat /etc/os-release:
[2025-10-09 18:51:29] NAME="CentOS Linux"
[2025-10-09 18:51:29] VERSION="7 (Core)"
[2025-10-09 18:51:29] ID="centos"
[2025-10-09 18:51:29] ID_LIKE="rhel fedora"
[2025-10-09 18:51:29] VERSION_ID="7"
[2025-10-09 18:51:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 18:51:29] ANSI_COLOR="0;31"
[2025-10-09 18:51:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 18:51:29] HOME_URL="https://www.centos.org/"
[2025-10-09 18:51:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 18:51:29] 
[2025-10-09 18:51:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 18:51:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 18:51:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 18:51:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 18:51:29] 
[2025-10-09 18:51:29] 2025-10-09 22:50:57,581 | INFO     | ***************************************
[2025-10-09 18:51:29] 2025-10-09 22:50:58,085 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-09 18:51:29] 2025-10-09 22:50:58,103 | INFO     | sufficient remaining disk space (73413951488 B)
[2025-10-09 18:51:29] 2025-10-09 22:50:58,103 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 18:51:29] 2025-10-09 22:50:58,104 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 18:51:29] 2025-10-09 22:50:58,104 | INFO     | update_server=False
[2025-10-09 18:51:29] 2025-10-09 22:50:58,105 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 18:51:29] 2025-10-09 22:50:58,105 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 18:51:29] 2025-10-09 22:50:58,106 | INFO     | aborting loop
[2025-10-09 18:51:29] 2025-10-09 22:50:58,542 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 18:51:29] 2025-10-09 22:50:58,897 | INFO     | all job control threads have been joined
[2025-10-09 18:51:29] 2025-10-09 22:50:59,110 | INFO     | [job] retrieve thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:50:59,110 | INFO     | [job] job monitor thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:50:59,123 | INFO     | [job] validate thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:50:59,206 | INFO     | all data control threads have been joined
[2025-10-09 18:51:29] 2025-10-09 22:50:59,274 | INFO     | all payload control threads have been joined
[2025-10-09 18:51:29] 2025-10-09 22:50:59,362 | INFO     | [data] copytool_in thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:50:59,422 | INFO     | [payload] validate_post thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:50:59,902 | INFO     | [job] control thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:51:00,064 | INFO     | [payload] failed_post thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:51:00,119 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:51:00,125 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:51:00,206 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:51:00,212 | INFO     | [data] control thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:51:00,279 | INFO     | [payload] control thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:51:00,446 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:51:00,548 | INFO     | [data] copytool_out thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:51:00,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 18:51:29] 2025-10-09 22:51:01,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 18:51:29] 2025-10-09 22:51:01,762 | INFO     | [job] queue monitor thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:51:02,531 | INFO     | [monitor] cgroup control has ended
[2025-10-09 18:51:29] 2025-10-09 22:51:05,121 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 18:51:29] 2025-10-09 22:51:05,723 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140059586307904)>', '<ExcThread(monitor, started 140058866734848)>']
[2025-10-09 18:51:29] 2025-10-09 22:51:10,749 | INFO     | all workflow threads have been joined
[2025-10-09 18:51:29] 2025-10-09 22:51:10,749 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 18:51:29] 2025-10-09 22:51:10,751 | INFO     | traces error code: 0
[2025-10-09 18:51:29] 2025-10-09 22:51:10,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 18:51:29] 2025-10-09 22:51:28,757 | INFO     | PID=3294121 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 18:51:29] 2025-10-09 22:51:28,760 | INFO     | .. there are 36 such processes running
[2025-10-09 18:51:29] 2025-10-09 22:51:28,760 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 18:51:29] 2025-10-09 22:51:28,760 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 18:51:29] 2025-10-09 22:51:28,760 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 18:51:29] 2025-10-09 22:51:28,760 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 18:51:29] 2025-10-09 22:51:28,760 | INFO     | [monitor] control thread has ended
[2025-10-09 18:51:29] 2025-10-09 22:51:28,871 [wrapper] ==== pilot stdout END ====
[2025-10-09 18:51:29] 2025-10-09 22:51:28,877 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 18:51:29] 2025-10-09 22:51:28,880 [wrapper] pilotpid: 3294121
[2025-10-09 18:51:29] 2025-10-09 22:51:28,884 [wrapper] Pilot exit status: 0
[2025-10-09 18:51:29] 2025-10-09 22:51:28,899 [wrapper] pandaids: 6837334397 6837334397
[2025-10-09 18:51:29] 2025-10-09 22:51:29,021 [wrapper] cleanup supervisor_pilot  449043 3294124
[2025-10-09 18:51:29] 2025-10-09 22:51:29,025 [wrapper] Test setup, not cleaning
[2025-10-09 18:51:29] 2025-10-09 22:51:29,027 [wrapper] apfmon messages muted
[2025-10-09 18:51:29] 2025-10-09 22:51:29,029 [wrapper] ==== wrapper stdout END ====
[2025-10-09 18:51:29] 2025-10-09 22:51:29,031 [wrapper] ==== wrapper stderr END ====
[2025-10-09 18:51:29]  *** Error codes and diagnostics ***
[2025-10-09 18:51:29]     "exeErrorCode": 0,
[2025-10-09 18:51:29]     "exeErrorDiag": "",
[2025-10-09 18:51:29]     "pilotErrorCode": 0,
[2025-10-09 18:51:29]     "pilotErrorDiag": "",
[2025-10-09 18:51:29]  *** Listing of results directory ***
[2025-10-09 18:51:29] total 628268
[2025-10-09 18:51:29] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 07:26 pilot3.tar.gz
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 07:50 queuedata.json
[2025-10-09 18:51:29] -rwx------. 1 boincer umatlas     36292 Oct  9 07:50 runpilot2-wrapper.sh
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas       100 Oct  9 13:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 18:51:29] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 13:49 run_atlas
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas       105 Oct  9 13:49 job.xml
[2025-10-09 18:51:29] -rw-r--r--. 3 boincer umatlas 221524748 Oct  9 13:49 EVNT.46676267._000669.pool.root.1
[2025-10-09 18:51:29] -rw-r--r--. 3 boincer umatlas 221524748 Oct  9 13:49 ATLAS.root_0
[2025-10-09 18:51:29] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 13:49 start_atlas.sh
[2025-10-09 18:51:29] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 13:49 shared
[2025-10-09 18:51:29] -rw-r--r--. 2 boincer umatlas    569677 Oct  9 13:49 input.tar.gz
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas         0 Oct  9 13:49 boinc_lockfile
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas      2549 Oct  9 15:46 pandaJob.out
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas    975454 Oct  9 15:46 agis_schedconf.cvmfs.json
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas      6934 Oct  9 18:47 init_data.xml
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas 192765866 Oct  9 18:50 HITS.46676269._016233.pool.root.1
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas       531 Oct  9 18:50 boinc_task_state.xml
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas        96 Oct  9 18:50 pilot_heartbeat.json
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas      1061 Oct  9 18:50 memory_monitor_summary.json
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas   1560401 Oct  9 18:50 agis_ddmendpoints.agis.ALL.json
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas    402426 Oct  9 18:50 log.46676269._016233.job.log.tgz.1
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas      7802 Oct  9 18:50 heartbeat.json
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas       823 Oct  9 18:51 pilotlog.txt
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas   1406548 Oct  9 18:51 log.46676269._016233.job.log.1
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 18:51 boinc_mmap_file
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas       357 Oct  9 18:51 output.list
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas       620 Oct  9 18:51 runtime_log
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas   1832960 Oct  9 18:51 result.tar.gz
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas      8784 Oct  9 18:51 runtime_log.err
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas       783 Oct  9 18:51 mkTMDmWL4Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGfZNDmO8viwm.diag
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas        28 Oct  9 18:51 wrapper_checkpoint.txt
[2025-10-09 18:51:29] -rw-r--r--. 1 boincer umatlas     23557 Oct  9 18:51 stderr.txt
[2025-10-09 18:51:29] HITS file was successfully produced:
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas 192765866 Oct  9 18:50 shared/HITS.pool.root.1
[2025-10-09 18:51:29]  *** Contents of shared directory: ***
[2025-10-09 18:51:29] total 406960
[2025-10-09 18:51:29] -rw-r--r--. 3 boincer umatlas 221524748 Oct  9 13:49 ATLAS.root_0
[2025-10-09 18:51:29] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 13:49 start_atlas.sh
[2025-10-09 18:51:29] -rw-r--r--. 2 boincer umatlas    569677 Oct  9 13:49 input.tar.gz
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas 192765866 Oct  9 18:50 HITS.pool.root.1
[2025-10-09 18:51:29] -rw-------. 1 boincer umatlas   1832960 Oct  9 18:51 result.tar.gz
18:51:31 (3271946): run_atlas exited; CPU time 31657.779700
18:51:31 (3271946): called boinc_finish(0)

</stderr_txt>
]]>

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