Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:54:51 (1360052): wrapper (7.7.26015): starting
00:54:51 (1360052): wrapper: running run_atlas (--nthreads 2)
[2025-10-10 00:54:51] Arguments: --nthreads 2
[2025-10-10 00:54:51] Threads: 2
[2025-10-10 00:54:51] Checking for CVMFS
[2025-10-10 00:54:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 00:54:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 00:54:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 00:54:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 00:54:52] 2.9.2.0 1214728 627 53824 151526 1 56 25873470 36864000 0 130560 0 383496 99.986 18873 811 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-10 00:54:52] CVMFS is ok
[2025-10-10 00:54:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 00:54:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 00:54:52] Further information can be found at the LHC@home message board.
[2025-10-10 00:54:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 00:54:52] Checking for apptainer binary...
[2025-10-10 00:54:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 00:54:52] Running /usr/bin/apptainer --version
[2025-10-10 00:54:52] apptainer version 1.4.1-1.1
[2025-10-10 00:54:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 00:54:52] madmaxA277a
[2025-10-10 00:54:52] apptainer works
[2025-10-10 00:54:52] Set ATHENA_PROC_NUMBER=2
[2025-10-10 00:54:52] Set ATHENA_CORE_NUMBER=2
[2025-10-10 00:54:52] Starting ATLAS job with PandaID=6837337075
[2025-10-10 00:54:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 02:58:23]  *** The last 200 lines of the pilot log: ***
[2025-10-10 02:58:23] 2025-10-10 00:57:51,763 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 02:58:23] 2025-10-10 00:57:51,763 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 02:58:23] 2025-10-10 00:57:51,763 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 02:58:23] 2025-10-10 00:57:51,763 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 02:58:23] 2025-10-10 00:57:51,763 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 02:58:23] 2025-10-10 00:57:51,763 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 02:58:23] 2025-10-10 00:57:51,763 | INFO     | job 6837337075 has completed (purged errors)
[2025-10-10 02:58:23] 2025-10-10 00:57:51,764 | INFO     | overall cleanup function is called
[2025-10-10 02:58:23] 2025-10-10 00:57:52,769 | INFO     | --- collectZombieJob: --- 10, [1370168]
[2025-10-10 02:58:23] 2025-10-10 00:57:52,770 | INFO     | zombie collector waiting for pid 1370168
[2025-10-10 02:58:23] 2025-10-10 00:57:52,770 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 02:58:23] 2025-10-10 00:57:52,770 | INFO     | collected zombie processes
[2025-10-10 02:58:23] 2025-10-10 00:57:52,770 | INFO     | will attempt to kill all subprocesses of pid=1370168
[2025-10-10 02:58:23] 2025-10-10 00:57:52,803 | INFO     | process IDs to be killed: [1370168] (in reverse order)
[2025-10-10 02:58:23] 2025-10-10 00:57:52,823 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 02:58:23] 2025-10-10 00:57:52,823 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 02:58:23] 2025-10-10 00:57:52,823 | INFO     | did not find any defunct processes belonging to 1370168
[2025-10-10 02:58:23] 2025-10-10 00:57:52,824 | INFO     | did not find any defunct processes belonging to 1370168
[2025-10-10 02:58:23] 2025-10-10 00:57:52,824 | INFO     | ready for new job
[2025-10-10 02:58:23] 2025-10-10 00:57:52,824 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 02:58:23] 2025-10-10 00:57:52,825 | INFO     | ***************************************
[2025-10-10 02:58:23] 2025-10-10 00:57:52,825 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 02:58:23] 2025-10-10 00:57:52,825 | INFO     | ***************************************
[2025-10-10 02:58:23] 2025-10-10 00:57:52,825 | INFO     | 
[2025-10-10 02:58:23] 2025-10-10 00:57:52,825 | INFO     | architecture information:
[2025-10-10 02:58:23] 2025-10-10 00:57:52,825 | INFO     | executing command: cat /etc/os-release
[2025-10-10 02:58:23] 2025-10-10 00:57:52,833 | INFO     | cat /etc/os-release:
[2025-10-10 02:58:23] NAME="CentOS Linux"
[2025-10-10 02:58:23] VERSION="7 (Core)"
[2025-10-10 02:58:23] ID="centos"
[2025-10-10 02:58:23] ID_LIKE="rhel fedora"
[2025-10-10 02:58:23] VERSION_ID="7"
[2025-10-10 02:58:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 02:58:23] ANSI_COLOR="0;31"
[2025-10-10 02:58:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 02:58:23] HOME_URL="https://www.centos.org/"
[2025-10-10 02:58:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 02:58:23] 
[2025-10-10 02:58:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 02:58:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 02:58:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 02:58:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 02:58:23] 
[2025-10-10 02:58:23] 2025-10-10 00:57:52,834 | INFO     | ***************************************
[2025-10-10 02:58:23] 2025-10-10 00:57:53,337 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-10 02:58:23] 2025-10-10 00:57:53,349 | INFO     | sufficient remaining disk space (492932431872 B)
[2025-10-10 02:58:23] 2025-10-10 00:57:53,349 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 02:58:23] 2025-10-10 00:57:53,349 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 02:58:23] 2025-10-10 00:57:53,349 | INFO     | update_server=False
[2025-10-10 02:58:23] 2025-10-10 00:57:53,349 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 02:58:23] 2025-10-10 00:57:53,349 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 02:58:23] 2025-10-10 00:57:53,349 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 02:58:23] 2025-10-10 00:57:53,530 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 02:58:23] 2025-10-10 00:57:53,531 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 02:58:23] 2025-10-10 00:57:53,531 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 02:58:23] 2025-10-10 00:57:53,531 | INFO     | will abort loop
[2025-10-10 02:58:23] 2025-10-10 00:57:54,254 | INFO     | all data control threads have been joined
[2025-10-10 02:58:23] 2025-10-10 00:57:54,355 | INFO     | [job] retrieve thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:54,355 | INFO     | [job] queue monitor thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:54,537 | INFO     | [job] job monitor thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:54,598 | INFO     | all job control threads have been joined
[2025-10-10 02:58:23] 2025-10-10 00:57:54,668 | INFO     | all payload control threads have been joined
[2025-10-10 02:58:23] 2025-10-10 00:57:54,924 | INFO     | [job] validate thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:55,186 | INFO     | [payload] validate_post thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:55,218 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:55,260 | INFO     | [data] control thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:55,265 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:55,355 | INFO     | [data] copytool_out thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:55,604 | INFO     | [job] control thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:55,612 | INFO     | [payload] failed_post thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:55,657 | INFO     | [data] copytool_in thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:55,674 | INFO     | [payload] control thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:55,853 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:57:55,953 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 02:58:23] 2025-10-10 00:57:59,960 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:58:04,174 | INFO     | job.realtimelogging is not enabled
[2025-10-10 02:58:23] 2025-10-10 00:58:05,180 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 02:58:23] 2025-10-10 00:58:15,522 | INFO     | [monitor] cgroup control has ended
[2025-10-10 02:58:23] 2025-10-10 00:58:16,650 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140651014399808)>', '<ExcThread(monitor, started 140650230044416)>']
[2025-10-10 02:58:23] 2025-10-10 00:58:21,676 | INFO     | all workflow threads have been joined
[2025-10-10 02:58:23] 2025-10-10 00:58:21,677 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 02:58:23] 2025-10-10 00:58:21,677 | INFO     | traces error code: 0
[2025-10-10 02:58:23] 2025-10-10 00:58:21,678 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 02:58:23] 2025-10-10 00:58:23,074 | INFO     | PID=1363758 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 02:58:23] 2025-10-10 00:58:23,075 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 02:58:23] 2025-10-10 00:58:23,075 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 02:58:23] 2025-10-10 00:58:23,075 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 02:58:23] 2025-10-10 00:58:23,075 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 02:58:23] 2025-10-10 00:58:23,075 | INFO     | [monitor] control thread has ended
[2025-10-10 02:58:23] 2025-10-10 00:58:23,115 [wrapper] ==== pilot stdout END ====
[2025-10-10 02:58:23] 2025-10-10 00:58:23,118 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 02:58:23] 2025-10-10 00:58:23,120 [wrapper] pilotpid: 1363758
[2025-10-10 02:58:23] 2025-10-10 00:58:23,122 [wrapper] Pilot exit status: 0
[2025-10-10 02:58:23] 2025-10-10 00:58:23,128 [wrapper] pandaids: 6837337075
[2025-10-10 02:58:23] 2025-10-10 00:58:23,141 [wrapper] cleanup supervisor_pilot 1385144 1363759
[2025-10-10 02:58:23] 2025-10-10 00:58:23,143 [wrapper] Test setup, not cleaning
[2025-10-10 02:58:23] 2025-10-10 00:58:23,145 [wrapper] apfmon messages muted
[2025-10-10 02:58:23] 2025-10-10 00:58:23,147 [wrapper] ==== wrapper stdout END ====
[2025-10-10 02:58:23] 2025-10-10 00:58:23,149 [wrapper] ==== wrapper stderr END ====
[2025-10-10 02:58:23]  *** Error codes and diagnostics ***
[2025-10-10 02:58:23]     "exeErrorCode": 0,
[2025-10-10 02:58:23]     "exeErrorDiag": "",
[2025-10-10 02:58:23]     "pilotErrorCode": 0,
[2025-10-10 02:58:23]     "pilotErrorDiag": "",
[2025-10-10 02:58:23]  *** Listing of results directory ***
[2025-10-10 02:58:23] total 411412
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc    557409 Oct  9 13:59 pilot3.tar.gz
[2025-10-10 02:58:23] -rwx------ 1 boinc boinc     36292 Oct  9 14:09 runpilot2-wrapper.sh
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc      5112 Oct  9 14:09 queuedata.json
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc       100 Oct 10 00:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 02:58:23] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 00:54 run_atlas
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc       105 Oct 10 00:54 job.xml
[2025-10-10 02:58:23] -rw-r--r-- 2 boinc boinc 221915362 Oct 10 00:54 EVNT.46676267._000697.pool.root.1
[2025-10-10 02:58:23] -rw-r--r-- 2 boinc boinc    569675 Oct 10 00:54 input.tar.gz
[2025-10-10 02:58:23] -rw-r--r-- 2 boinc boinc     15120 Oct 10 00:54 start_atlas.sh
[2025-10-10 02:58:23] drwxrwx--x 2 boinc boinc      4096 Oct 10 00:54 shared
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc         0 Oct 10 00:54 boinc_setup_complete
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc      6210 Oct 10 00:54 init_data.xml
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc         0 Oct 10 00:54 boinc_lockfile
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc      2549 Oct 10 00:54 pandaJob.out
[2025-10-10 02:58:23] -rw------- 1 boinc boinc    975454 Oct 10 00:55 agis_schedconf.cvmfs.json
[2025-10-10 02:58:23] -rw------- 1 boinc boinc   1560401 Oct 10 00:55 agis_ddmendpoints.agis.ALL.json
[2025-10-10 02:58:23] drwx------ 5 boinc boinc      4096 Oct 10 00:55 pilot3
[2025-10-10 02:58:23] -rw------- 1 boinc boinc 192795315 Oct 10 02:57 HITS.46676269._016870.pool.root.1
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc       529 Oct 10 02:57 boinc_task_state.xml
[2025-10-10 02:58:23] -rw------- 1 boinc boinc        95 Oct 10 02:57 pilot_heartbeat.json
[2025-10-10 02:58:23] -rw------- 1 boinc boinc      1020 Oct 10 02:57 memory_monitor_summary.json
[2025-10-10 02:58:23] -rw------- 1 boinc boinc    280500 Oct 10 02:57 log.46676269._016870.job.log.tgz.1
[2025-10-10 02:58:23] -rw------- 1 boinc boinc      7761 Oct 10 02:57 heartbeat.json
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc      8192 Oct 10 02:58 boinc_mmap_file
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc        27 Oct 10 02:58 wrapper_checkpoint.txt
[2025-10-10 02:58:23] -rw------- 1 boinc boinc       747 Oct 10 02:58 pilotlog.txt
[2025-10-10 02:58:23] -rw------- 1 boinc boinc   1064126 Oct 10 02:58 log.46676269._016870.job.log.1
[2025-10-10 02:58:23] -rw------- 1 boinc boinc       357 Oct 10 02:58 output.list
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc       620 Oct 10 02:58 runtime_log
[2025-10-10 02:58:23] -rw------- 1 boinc boinc   1361920 Oct 10 02:58 result.tar.gz
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc      8802 Oct 10 02:58 runtime_log.err
[2025-10-10 02:58:23] -rw------- 1 boinc boinc       664 Oct 10 02:58 hj4NDmId4Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmvoNMDmSHm86m.diag
[2025-10-10 02:58:23] -rw-r--r-- 1 boinc boinc     11743 Oct 10 02:58 stderr.txt
[2025-10-10 02:58:23] HITS file was successfully produced:
[2025-10-10 02:58:23] -rw------- 1 boinc boinc 192795315 Oct 10 02:57 shared/HITS.pool.root.1
[2025-10-10 02:58:23]  *** Contents of shared directory: ***
[2025-10-10 02:58:23] total 406912
[2025-10-10 02:58:23] -rw-r--r-- 2 boinc boinc 221915362 Oct 10 00:54 ATLAS.root_0
[2025-10-10 02:58:23] -rw-r--r-- 2 boinc boinc    569675 Oct 10 00:54 input.tar.gz
[2025-10-10 02:58:23] -rw-r--r-- 2 boinc boinc     15120 Oct 10 00:54 start_atlas.sh
[2025-10-10 02:58:23] -rw------- 1 boinc boinc 192795315 Oct 10 02:57 HITS.pool.root.1
[2025-10-10 02:58:23] -rw------- 1 boinc boinc   1361920 Oct 10 02:58 result.tar.gz
02:58:24 (1360052): run_atlas exited; CPU time 14321.137962
02:58:24 (1360052): called boinc_finish(0)

</stderr_txt>
]]>

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