Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:07:15 (1322684): wrapper (7.7.26015): starting
13:07:15 (1322684): wrapper: running run_atlas (--nthreads 12)
[2025-10-09 13:07:15] Arguments: --nthreads 12
[2025-10-09 13:07:15] Threads: 12
[2025-10-09 13:07:15] Checking for CVMFS
[2025-10-09 13:07:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 13:07:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 13:07:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 13:07:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 13:07:16] 2.13.2.0 135553 152 62876 151514 3 195 17507719 32503808 8321 16776704 0 2748808 99.974 223176 43200 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 13:07:16] CVMFS is ok
[2025-10-09 13:07:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 13:07:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 13:07:16] Further information can be found at the LHC@home message board.
[2025-10-09 13:07:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 13:07:16] Checking for apptainer binary...
[2025-10-09 13:07:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 13:07:16] Running /usr/bin/apptainer --version
[2025-10-09 13:07:16] apptainer version 1.4.3-1.el9
[2025-10-09 13:07:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 13:07:16] c8-7-2.aglt2.org
[2025-10-09 13:07:16] apptainer works
[2025-10-09 13:07:16] Set ATHENA_PROC_NUMBER=12
[2025-10-09 13:07:16] Set ATHENA_CORE_NUMBER=12
[2025-10-09 13:07:16] Starting ATLAS job with PandaID=6837329705
[2025-10-09 13:07:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 13:40:56]  *** The last 200 lines of the pilot log: ***
[2025-10-09 13:40:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/c0/log.46676269._014564.job.log.tgz.1
[2025-10-09 13:40:56]  workdir=None
[2025-10-09 13:40:56] ]
[2025-10-09 13:40:56] 2025-10-09 17:40:14,655 | INFO     | transferring file log.46676269._014564.job.log.tgz.1 from /tmp/boinchome/slots/9/PanDA_Pilot-6837329705/log.46676269._014564.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-09 13:40:56] 2025-10-09 17:40:14,655 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/9/PanDA_Pilot-6837329705/log.46676269._014564.job.log.tgz.1 /tmp/boinchome/slots/9/log.46676269._014564.job
[2025-10-09 13:40:56] 2025-10-09 17:40:14,668 | INFO     | adding to output.list: log.46676269._014564.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/c0/log.46676269._014564.job.log.tg
[2025-10-09 13:40:56] 2025-10-09 17:40:14,669 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 13:40:56] 2025-10-09 17:40:14,669 | INFO     | summary of transferred files:
[2025-10-09 13:40:56] 2025-10-09 17:40:14,669 | INFO     |  -- lfn=log.46676269._014564.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 13:40:56] 2025-10-09 17:40:14,669 | INFO     | stage-out finished correctly
[2025-10-09 13:40:56] 2025-10-09 17:40:14,759 | INFO     | monitor loop #149: job 0:6837329705 is in state 'finished'
[2025-10-09 13:40:56] 2025-10-09 17:40:14,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:40:56] 2025-10-09 17:40:15,163 | INFO     | time since job start (1972s) is within the limit (172800.0s)
[2025-10-09 13:40:56] 2025-10-09 17:40:15,163 | INFO     | 1974s have passed since pilot start - server update state is 'RUNNING'
[2025-10-09 13:40:56] 2025-10-09 17:40:17,163 | INFO     | time since job start (1974s) is within the limit (172800.0s)
[2025-10-09 13:40:56] 2025-10-09 17:40:17,262 | INFO     | monitor loop #150: job 0:6837329705 is in state 'finished'
[2025-10-09 13:40:56] 2025-10-09 17:40:17,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:40:56] 2025-10-09 17:40:17,986 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 13:40:56] 2025-10-09 17:40:19,169 | INFO     | time since job start (1976s) is within the limit (172800.0s)
[2025-10-09 13:40:56] 2025-10-09 17:40:19,764 | INFO     | monitor loop #151: job 0:6837329705 is in state 'finished'
[2025-10-09 13:40:56] 2025-10-09 17:40:19,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:40:56] 2025-10-09 17:40:20,580 | INFO     | job 6837329705 has state=finished
[2025-10-09 13:40:56] 2025-10-09 17:40:20,580 | INFO     | preparing for final server update for job 6837329705 in state='finished'
[2025-10-09 13:40:56] 2025-10-09 17:40:20,628 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-09 13:40:56] 2025-10-09 17:40:20,629 | INFO     | this job has now completed (state=finished)
[2025-10-09 13:40:56] 2025-10-09 17:40:20,629 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 13:40:56] 2025-10-09 17:40:20,629 | INFO     | log transfer has been attempted: DONE
[2025-10-09 13:40:56] 2025-10-09 17:40:20,629 | INFO     | job 6837329705 has finished - writing final server update
[2025-10-09 13:40:56] 2025-10-09 17:40:20,629 | INFO     | total number of processed events: 400 (read)
[2025-10-09 13:40:56] 2025-10-09 17:40:20,629 | INFO     | executing command: lscpu
[2025-10-09 13:40:56] 2025-10-09 17:40:20,681 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 13:40:56] 2025-10-09 17:40:21,174 | INFO     | time since job start (1978s) is within the limit (172800.0s)
[2025-10-09 13:40:56] 2025-10-09 17:40:22,268 | INFO     | monitor loop #152: job 0:6837329705 is in state 'finished'
[2025-10-09 13:40:56] 2025-10-09 17:40:22,268 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:40:56] 2025-10-09 17:40:23,179 | INFO     | time since job start (1980s) is within the limit (172800.0s)
[2025-10-09 13:40:56] 2025-10-09 17:40:23,462 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-09 13:40:56] 2025-10-09 17:40:23,466 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3477.868234374998
[2025-10-09 13:40:56] 2025-10-09 17:40:23,493 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6837329705/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 13:40:56] 2025-10-09 17:40:23,494 | INFO     | extracted standard info from prmon json
[2025-10-09 13:40:56] 2025-10-09 17:40:23,494 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 13:40:56] 2025-10-09 17:40:23,494 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 13:40:56] 2025-10-09 17:40:23,494 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 13:40:56] 2025-10-09 17:40:23,494 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 13:40:56] 2025-10-09 17:40:23,494 | INFO     | fitting pss+swap vs Time
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | sum of square deviations: 4837300.0
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | sum of deviations: -62225551.000000015
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | mean x: 1760030701.0
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | mean y: 2378142.56
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | -- intersect: 22642875971.233284
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | intersect: 22642875971.233284
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | chi2: 0.0023368240381879605
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | -- intersect: 22642875971.233284
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | current memory leak: -12.86 B/s (using 25 data points, chi2=0.00)
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | could have reported an average CPU frequency of 3501 MHz (5 samples)
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | ..............................
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | . Timing measurements:
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | . get job = 0 s
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | . initial setup = 2 s
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | . payload setup = 3 s
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | . stage-in = 0 s
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | . payload execution = 1949 s
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | . stage-out = 0 s
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | . log creation = 0 s
[2025-10-09 13:40:56] 2025-10-09 17:40:23,495 | INFO     | ..............................
[2025-10-09 13:40:56] 2025-10-09 17:40:23,951 | INFO     | 
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | job summary report
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | --------------------------------------------------
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | PanDA job id: 6837329705
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | task id: 46676269
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | errors: (none)
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | pilot state: finished 
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | transexitcode: 0
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | exeerrorcode: 0
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | exeerrordiag: 
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | exitcode: 0
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | exitmsg: OK
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | cpuconsumptiontime: 21613 s
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | nevents: 400
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | neventsw: 0
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | pid: 1344081
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | pgrp: 1344081
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | corecount: 12
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | event service: False
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | sizes: {0: 2348685, 1: 2348884, 4: 2349146, 11: 2349174, 1956: 2374149, 1958: 2383147, 1961: 2383331, 1967: 2383557}
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | --------------------------------------------------
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | 
[2025-10-09 13:40:56] 2025-10-09 17:40:23,952 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-10-09 13:40:56] 2025-10-09 17:40:23,964 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,964 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,964 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,964 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,964 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | job 6837329705 has completed (purged errors)
[2025-10-09 13:40:56] 2025-10-09 17:40:23,965 | INFO     | overall cleanup function is called
[2025-10-09 13:40:56] 2025-10-09 17:40:24,972 | INFO     | --- collectZombieJob: --- 10, [1344081]
[2025-10-09 13:40:56] 2025-10-09 17:40:24,973 | INFO     | zombie collector waiting for pid 1344081
[2025-10-09 13:40:56] 2025-10-09 17:40:24,973 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 13:40:56] 2025-10-09 17:40:24,973 | INFO     | collected zombie processes
[2025-10-09 13:40:56] 2025-10-09 17:40:24,973 | INFO     | will attempt to kill all subprocesses of pid=1344081
[2025-10-09 13:40:56] 2025-10-09 17:40:25,229 | INFO     | process IDs to be killed: [1344081] (in reverse order)
[2025-10-09 13:40:56] 2025-10-09 17:40:25,339 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 13:40:56] 2025-10-09 17:40:25,339 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 13:40:56] 2025-10-09 17:40:25,358 | INFO     | did not find any defunct processes belonging to 1344081
[2025-10-09 13:40:56] 2025-10-09 17:40:25,373 | INFO     | did not find any defunct processes belonging to 1344081
[2025-10-09 13:40:56] 2025-10-09 17:40:25,373 | INFO     | ready for new job
[2025-10-09 13:40:56] 2025-10-09 17:40:25,374 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 13:40:56] 2025-10-09 17:40:25,375 | INFO     | ***************************************
[2025-10-09 13:40:56] 2025-10-09 17:40:25,375 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 13:40:56] 2025-10-09 17:40:25,375 | INFO     | ***************************************
[2025-10-09 13:40:56] 2025-10-09 17:40:25,375 | INFO     | 
[2025-10-09 13:40:56] 2025-10-09 17:40:25,392 | INFO     | architecture information:
[2025-10-09 13:40:56] 2025-10-09 17:40:25,392 | INFO     | executing command: cat /etc/os-release
[2025-10-09 13:40:56] 2025-10-09 17:40:25,405 | INFO     | cat /etc/os-release:
[2025-10-09 13:40:56] NAME="CentOS Linux"
[2025-10-09 13:40:56] VERSION="7 (Core)"
[2025-10-09 13:40:56] ID="centos"
[2025-10-09 13:40:56] ID_LIKE="rhel fedora"
[2025-10-09 13:40:56] VERSION_ID="7"
[2025-10-09 13:40:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 13:40:56] ANSI_COLOR="0;31"
[2025-10-09 13:40:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 13:40:56] HOME_URL="https://www.centos.org/"
[2025-10-09 13:40:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 13:40:56] 
[2025-10-09 13:40:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 13:40:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 13:40:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 13:40:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 13:40:56] 
[2025-10-09 13:40:56] 2025-10-09 17:40:25,406 | INFO     | ***************************************
[2025-10-09 13:40:56] 2025-10-09 17:40:25,908 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-10-09 13:40:56] 2025-10-09 17:40:25,921 | INFO     | sufficient remaining disk space (89938460672 B)
[2025-10-09 13:40:56] 2025-10-09 17:40:25,921 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 13:40:56] 2025-10-09 17:40:25,922 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 13:40:56] 2025-10-09 17:40:25,922 | INFO     | update_server=False
[2025-10-09 13:40:56] 2025-10-09 17:40:25,922 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 13:40:56] 2025-10-09 17:40:25,922 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 13:40:56] 2025-10-09 17:40:25,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 13:40:56] 2025-10-09 17:40:25,922 | INFO     | aborting loop
[2025-10-09 13:40:56] 2025-10-09 17:40:25,966 | INFO     | [monitor] cgroup control has ended
[2025-10-09 13:40:56] 2025-10-09 17:40:26,249 | INFO     | all data control threads have been joined
[2025-10-09 13:40:56] 2025-10-09 17:40:26,927 | INFO     | [job] retrieve thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:26,928 | INFO     | [job] job monitor thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:27,229 | INFO     | [payload] failed_post thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:27,255 | INFO     | [data] control thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:27,344 | INFO     | all payload control threads have been joined
[2025-10-09 13:40:56] 2025-10-09 17:40:27,347 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:27,543 | INFO     | all job control threads have been joined
[2025-10-09 13:40:56] 2025-10-09 17:40:27,928 | INFO     | [data] copytool_out thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:28,028 | INFO     | [job] validate thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:28,131 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:28,135 | INFO     | [data] copytool_in thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:28,249 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:28,321 | INFO     | [payload] validate_post thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:28,349 | INFO     | [payload] control thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:28,538 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 13:40:56] 2025-10-09 17:40:28,548 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 13:40:56] 2025-10-09 17:40:28,549 | INFO     | [job] control thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:29,544 | INFO     | [job] queue monitor thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:32,553 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:36,728 | INFO     | job.realtimelogging is not enabled
[2025-10-09 13:40:56] 2025-10-09 17:40:37,733 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 13:40:56] 2025-10-09 17:40:38,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140112361043776)>', '<ExcThread(monitor, started 140111865952000)>']
[2025-10-09 13:40:56] 2025-10-09 17:40:43,265 | INFO     | all workflow threads have been joined
[2025-10-09 13:40:56] 2025-10-09 17:40:43,266 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 13:40:56] 2025-10-09 17:40:43,266 | INFO     | traces error code: 0
[2025-10-09 13:40:56] 2025-10-09 17:40:43,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 13:40:56] 2025-10-09 17:40:56,581 | INFO     | PID=1329753 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 13:40:56] 2025-10-09 17:40:56,581 | INFO     | .. there are 11 such processes running
[2025-10-09 13:40:56] 2025-10-09 17:40:56,581 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 13:40:56] 2025-10-09 17:40:56,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 13:40:56] 2025-10-09 17:40:56,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 13:40:56] 2025-10-09 17:40:56,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 13:40:56] 2025-10-09 17:40:56,582 | INFO     | [monitor] control thread has ended
[2025-10-09 13:40:56] 2025-10-09 17:40:56,637 [wrapper] ==== pilot stdout END ====
[2025-10-09 13:40:56] 2025-10-09 17:40:56,638 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 13:40:56] 2025-10-09 17:40:56,639 [wrapper] pilotpid: 1329753
[2025-10-09 13:40:56] 2025-10-09 17:40:56,641 [wrapper] Pilot exit status: 0
[2025-10-09 13:40:56] 2025-10-09 17:40:56,646 [wrapper] pandaids: 6837329705
[2025-10-09 13:40:56] 2025-10-09 17:40:56,717 [wrapper] cleanup supervisor_pilot 1501182 1329754
[2025-10-09 13:40:56] 2025-10-09 17:40:56,718 [wrapper] Test setup, not cleaning
[2025-10-09 13:40:56] 2025-10-09 17:40:56,719 [wrapper] apfmon messages muted
[2025-10-09 13:40:56] 2025-10-09 17:40:56,720 [wrapper] ==== wrapper stdout END ====
[2025-10-09 13:40:56] 2025-10-09 17:40:56,722 [wrapper] ==== wrapper stderr END ====
[2025-10-09 13:40:56]  *** Error codes and diagnostics ***
[2025-10-09 13:40:56]     "exeErrorCode": 0,
[2025-10-09 13:40:56]     "exeErrorDiag": "",
[2025-10-09 13:40:56]     "pilotErrorCode": 0,
[2025-10-09 13:40:56]     "pilotErrorDiag": "",
[2025-10-09 13:40:56]  *** Listing of results directory ***
[2025-10-09 13:40:56] total 418312
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 06:51 queuedata.json
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 06:52 pilot3.tar.gz
[2025-10-09 13:40:56] -rwx------. 1 boincer umatlas     36292 Oct  9 06:55 runpilot2-wrapper.sh
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas       100 Oct  9 13:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 13:40:56] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 13:07 run_atlas
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas       105 Oct  9 13:07 job.xml
[2025-10-09 13:40:56] -rw-r--r--. 2 boincer umatlas 222268416 Oct  9 13:07 EVNT.46676267._000597.pool.root.1
[2025-10-09 13:40:56] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 13:07 start_atlas.sh
[2025-10-09 13:40:56] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 13:07 shared
[2025-10-09 13:40:56] -rw-r--r--. 2 boincer umatlas    569681 Oct  9 13:07 input.tar.gz
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas         0 Oct  9 13:07 boinc_lockfile
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas      2550 Oct  9 13:07 pandaJob.out
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas    975462 Oct  9 13:07 agis_schedconf.cvmfs.json
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas   1560401 Oct  9 13:07 agis_ddmendpoints.agis.ALL.json
[2025-10-09 13:40:56] drwx------. 5 boincer umatlas      4096 Oct  9 13:07 pilot3
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas      7161 Oct  9 13:38 init_data.xml
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas 200843472 Oct  9 13:39 HITS.46676269._014564.pool.root.1
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas       529 Oct  9 13:39 boinc_task_state.xml
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas        95 Oct  9 13:40 pilot_heartbeat.json
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas      1031 Oct  9 13:40 memory_monitor_summary.json
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas    349075 Oct  9 13:40 log.46676269._014564.job.log.tgz.1
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas      7772 Oct  9 13:40 heartbeat.json
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas        27 Oct  9 13:40 wrapper_checkpoint.txt
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 13:40 boinc_mmap_file
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas       823 Oct  9 13:40 pilotlog.txt
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas    322165 Oct  9 13:40 log.46676269._014564.job.log.1
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas       357 Oct  9 13:40 output.list
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas       620 Oct  9 13:40 runtime_log
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas    686080 Oct  9 13:40 result.tar.gz
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas      8695 Oct  9 13:40 runtime_log.err
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas       650 Oct  9 13:40 JBINDmzT3Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcPZNDmKPGRym.diag
[2025-10-09 13:40:56] -rw-r--r--. 1 boincer umatlas     22283 Oct  9 13:40 stderr.txt
[2025-10-09 13:40:56] HITS file was successfully produced:
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas 200843472 Oct  9 13:39 shared/HITS.pool.root.1
[2025-10-09 13:40:56]  *** Contents of shared directory: ***
[2025-10-09 13:40:56] total 414456
[2025-10-09 13:40:56] -rw-r--r--. 2 boincer umatlas 222268416 Oct  9 13:07 ATLAS.root_0
[2025-10-09 13:40:56] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 13:07 start_atlas.sh
[2025-10-09 13:40:56] -rw-r--r--. 2 boincer umatlas    569681 Oct  9 13:07 input.tar.gz
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas 200843472 Oct  9 13:39 HITS.pool.root.1
[2025-10-09 13:40:56] -rw-------. 1 boincer umatlas    686080 Oct  9 13:40 result.tar.gz
13:40:58 (1322684): run_atlas exited; CPU time 21658.702518
13:40:58 (1322684): called boinc_finish(0)

</stderr_txt>
]]>

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