Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-09 12:04:52 (2662962): vboxwrapper version 26210
2025-10-09 12:04:52 (2662962): BOINC client version: 8.2.5
2025-10-09 12:04:52 (2662962): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-09 12:04:52 (2662962): Successfully copied 'init_data.xml' to the shared directory.
2025-10-09 12:04:52 (2662962): Create VM. (boinc_5145e5d3aa84b9a1, slot#3)
2025-10-09 12:04:52 (2662962): Setting Memory Size for VM. (4400MB)
2025-10-09 12:04:53 (2662962): Setting CPU Count for VM. (4)
2025-10-09 12:04:53 (2662962): Setting Chipset Options for VM.
2025-10-09 12:04:53 (2662962): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-09 12:04:53 (2662962): Setting Boot Options for VM.
2025-10-09 12:04:53 (2662962): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-09 12:04:54 (2662962): Enabling VM Network Access.
2025-10-09 12:04:54 (2662962): Disabling USB Support for VM.
2025-10-09 12:04:54 (2662962): Disabling COM Port Support for VM.
2025-10-09 12:04:54 (2662962): Disabling LPT Port Support for VM.
2025-10-09 12:04:54 (2662962): Disabling Audio Support for VM.
2025-10-09 12:04:54 (2662962): Disabling Clipboard Support for VM.
2025-10-09 12:04:54 (2662962): Disabling Drag and Drop Support for VM.
2025-10-09 12:04:55 (2662962): Adding storage controller(s) to VM.
2025-10-09 12:04:55 (2662962): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-09 12:04:56 (2662962): Adding VirtualBox Guest Additions to VM.
2025-10-09 12:04:57 (2662962): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-09 12:04:58 (2662962): forwarding host port 42147 to guest port 80
2025-10-09 12:04:58 (2662962): Enabling remote desktop for VM.
2025-10-09 12:04:58 (2662962): Required extension pack not installed, remote desktop not enabled.
2025-10-09 12:04:58 (2662962): Enabling shared directory for VM.
2025-10-09 12:04:58 (2662962): Starting VM using VBoxManage interface. (boinc_5145e5d3aa84b9a1, slot#3)
2025-10-09 12:05:00 (2662962): Successfully started VM. (PID = '2663619')
2025-10-09 12:05:00 (2662962): Reporting VM Process ID to BOINC.
2025-10-09 12:05:00 (2662962): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-09 12:05:00 (2662962): Guest Log: CPUID EDX: 0x178bfbff
2025-10-09 12:05:00 (2662962): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-09 12:05:00 (2662962): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-09 12:05:00 (2662962): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-09 12:05:00 (2662962): Detected: Web Application Enabled (http://localhost:42147)
2025-10-09 12:05:00 (2662962): Preference change detected
2025-10-09 12:05:00 (2662962): Setting CPU throttle for VM. (100%)
2025-10-09 12:05:00 (2662962): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-09 12:05:02 (2662962): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-09 12:05:02 (2662962): Guest Log: BIOS: Booting from Hard Disk...
2025-10-09 12:05:03 (2662962): VM state change detected. (old = 'running', new = 'paused')
2025-10-09 12:05:22 (2662962): VM state change detected. (old = 'paused', new = 'running')
2025-10-09 12:05:25 (2662962): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-09 12:05:25 (2662962): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-09 12:05:25 (2662962): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-09 12:05:36 (2662962): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-09 12:05:36 (2662962): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-09 12:05:47 (2662962): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-09 12:05:47 (2662962): Guest Log: 00:00:00.000159 main     Log opened 2025-10-09T17:05:25.541736000Z
2025-10-09 12:05:47 (2662962): Guest Log: 00:00:00.000266 main     OS Product: Linux
2025-10-09 12:05:47 (2662962): Guest Log: 00:00:00.000300 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-09 12:05:47 (2662962): Guest Log: 00:00:00.000327 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-09 12:05:47 (2662962): Guest Log: 00:00:00.000353 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-09 12:05:47 (2662962): Guest Log: 00:00:00.000353 main     Process ID: 1309
2025-10-09 12:05:47 (2662962): Guest Log: 00:00:00.000354 main     Package type: LINUX_64BITS_GENERIC
2025-10-09 12:05:47 (2662962): Guest Log: 00:00:00.001629 main     5.2.32 r132073 started. Verbose level = 0
2025-10-09 12:05:47 (2662962): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-09 12:05:47 (2662962): Guest Log: [INFO] Mounting shared directory
2025-10-09 12:05:47 (2662962): Guest Log: [INFO] Checking for init_data.xml
2025-10-09 12:06:09 (2662962): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-09 12:06:09 (2662962): Guest Log: [INFO] Detected branch: prod
2025-10-09 12:06:09 (2662962): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-09 12:06:09 (2662962): Guest Log: Copying input files
2025-10-09 12:06:11 (2662962): Guest Log: Copied input files into RunAtlas.
2025-10-09 12:06:11 (2662962): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-09 12:06:11 (2662962): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-09 12:06:11 (2662962): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-09 12:06:11 (2662962): Guest Log: Further information can be found at the LHC@home message board.
2025-10-09 12:06:39 (2662962): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-09 12:06:39 (2662962): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-09 12:06:39 (2662962): Guest Log: 2.6.3.0 1589 0 32148 151514 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-09 12:06:42 (2662962): Guest Log: copied the webapp to /var/www
2025-10-09 12:06:42 (2662962): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-09 12:06:42 (2662962): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-09 12:06:42 (2662962): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-09 12:06:42 (2662962): Guest Log:  *** Starting ATLAS job. (PandaID=6837349633 taskID=46676269) ***
2025-10-09 13:44:21 (2662962): Status Report: Elapsed Time: '6000.000000'
2025-10-09 13:44:21 (2662962): Status Report: CPU Time: '20724.970000'
2025-10-09 14:14:23 (2662962): Guest Log:  *** Job finished ***
2025-10-09 14:14:23 (2662962): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:13:58,752 | INFO     | all workflow threads have been joined
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:13:58,752 | INFO     | end of generic workflow (traces error code: 0)
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:13:58,752 | INFO     | traces error code: 0
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:13:58,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:04,739 | INFO     | PID=5998 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:04,740 | INFO     | found 0 job(s) in 20 queues
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:04,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:04,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:04,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:04,740 | INFO     | [monitor] control thread has ended
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:05,076 [wrapper] ==== pilot stdout END ====
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:05,082 [wrapper] ==== wrapper stdout RESUME ====
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:05,087 [wrapper] pilotpid: 5998
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:05,093 [wrapper] Pilot exit status: 0
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:05,201 [wrapper] pandaids: 6837349633
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:05,236 [wrapper] cleanup supervisor_pilot  5021 5999
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:05,241 [wrapper] Test setup, not cleaning
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:05,247 [wrapper] apfmon messages muted
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:05,253 [wrapper] ==== wrapper stdout END ====
2025-10-09 14:14:23 (2662962): Guest Log: 2025-10-09 19:14:05,259 [wrapper] ==== wrapper stderr END ====
2025-10-09 14:14:23 (2662962): Guest Log:  *** Error codes and diagnostics ***
2025-10-09 14:14:23 (2662962): Guest Log:     "exeErrorCode": 0,
2025-10-09 14:14:23 (2662962): Guest Log:     "exeErrorDiag": "",
2025-10-09 14:14:23 (2662962): Guest Log:     "pilotErrorCode": 0,
2025-10-09 14:14:23 (2662962): Guest Log:     "pilotErrorDiag": "",
2025-10-09 14:14:23 (2662962): Guest Log:  *** Listing of results directory ***
2025-10-09 14:14:23 (2662962): Guest Log: total 193648
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct  9 15:06 pilot3.tar.gz
2025-10-09 14:14:23 (2662962): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  9 15:11 runpilot2-wrapper.sh
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  9 15:11 queuedata.json
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct  9 17:05 start_atlas.sh
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 atlas atlas      5931 Oct  9 17:05 init_data.xml
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 atlas atlas    569678 Oct  9 17:05 input.tar.gz
2025-10-09 14:14:23 (2662962): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  9 17:05 EVNT.46676267._000879.pool.root.1 -> /data/./ATLAS.root_0
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Oct  9 17:06 pandaJob.out
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas    975462 Oct  9 17:07 agis_schedconf.cvmfs.json
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  9 17:07 agis_ddmendpoints.agis.ALL.json
2025-10-09 14:14:23 (2662962): Guest Log: drwx------. 5 atlas atlas      4096 Oct  9 17:07 pilot3
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas 191825386 Oct  9 19:12 HITS.46676269._021062.pool.root.1
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas      1031 Oct  9 19:13 memory_monitor_summary.json
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas    296339 Oct  9 19:13 log.46676269._021062.job.log.tgz.1
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas      7818 Oct  9 19:13 heartbeat.json
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas        95 Oct  9 19:14 pilot_heartbeat.json
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas       744 Oct  9 19:14 pilotlog.txt
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas   1026814 Oct  9 19:14 log.46676269._021062.job.log.1
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas       357 Oct  9 19:14 output.list
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  9 19:14 runtime_log
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas   1341440 Oct  9 19:14 result.tar.gz
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 atlas atlas      8633 Oct  9 19:14 runtime_log.err
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas       652 Oct  9 19:14 HrIKDmpT7Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmJBOMDmmF2Uwn.diag
2025-10-09 14:14:23 (2662962): Guest Log: Looking for outputfile HITS.46676269._021062.pool.root.1
2025-10-09 14:14:23 (2662962): Guest Log: HITS file was successfully produced
2025-10-09 14:14:23 (2662962): Guest Log: -rw-------. 1 atlas atlas 191825386 Oct  9 19:12 /home/atlas/RunAtlas/HITS.46676269._021062.pool.root.1
2025-10-09 14:14:23 (2662962): Guest Log: Successfully finished the ATLAS job!
2025-10-09 14:14:23 (2662962): Guest Log: Copying the results back to the shared directory!
2025-10-09 14:14:23 (2662962): Guest Log:  *** Contents of shared directory: ***
2025-10-09 14:14:23 (2662962): Guest Log: total 218556
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 root root 221857235 Oct  9 17:04 ATLAS.root_0
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 root root      5931 Oct  9 17:04 init_data.xml
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 root root    569678 Oct  9 17:04 input.tar.gz
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 root root   1341440 Oct  9  2025 result.tar.gz
2025-10-09 14:14:23 (2662962): Guest Log: -rw-r--r--. 1 root root     15120 Oct  9 17:04 start_atlas.sh
2025-10-09 14:14:23 (2662962): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-09 14:14:23 (2662962): VM Completion File Detected.
2025-10-09 14:14:23 (2662962): Powering off VM.
2025-10-09 14:14:24 (2662962): Successfully stopped VM.
2025-10-09 14:14:24 (2662962): Deregistering VM. (boinc_5145e5d3aa84b9a1, slot#3)
2025-10-09 14:14:24 (2662962): Removing network bandwidth throttle group from VM.
2025-10-09 14:14:24 (2662962): Removing VM from VirtualBox.
2025-10-09 14:14:31 (2662962): called boinc_finish(0)

</stderr_txt>
]]>

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