Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:04:24 (24953): wrapper (7.7.26015): starting
13:04:24 (24953): wrapper: running run_atlas (--nthreads 12)
[2025-10-09 13:04:24] Arguments: --nthreads 12
[2025-10-09 13:04:24] Threads: 12
[2025-10-09 13:04:24] Checking for CVMFS
[2025-10-09 13:04:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 13:04:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 13:04:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 13:04:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 13:04:24] 2.11.2.0 2984 218791 96332 151514 3 9 10475947 20275200 1 130560 1 105520531 99.984 13228934 12527 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 13:04:24] CVMFS is ok
[2025-10-09 13:04:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 13:04:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 13:04:24] Further information can be found at the LHC@home message board.
[2025-10-09 13:04:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 13:04:24] Checking for apptainer binary...
[2025-10-09 13:04:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 13:04:24] Running /usr/bin/apptainer --version
[2025-10-09 13:04:24] apptainer version 1.3.2-1.el7
[2025-10-09 13:04:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 13:04:26] c-205-26.aglt2.org
[2025-10-09 13:04:26] apptainer works
[2025-10-09 13:04:26] Set ATHENA_PROC_NUMBER=12
[2025-10-09 13:04:26] Set ATHENA_CORE_NUMBER=12
[2025-10-09 13:04:26] Starting ATLAS job with PandaID=6837331686
[2025-10-09 13:04:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 14:18:53]  *** The last 200 lines of the pilot log: ***
[2025-10-09 14:18:53]  status_code=0
[2025-10-09 14:18:53]  storage_token=
[2025-10-09 14:18:53]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837331686/log.46676269._015002.job.log.tgz.1
[2025-10-09 14:18:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/01/log.46676269._015002.job.log.tgz.1
[2025-10-09 14:18:53]  workdir=None
[2025-10-09 14:18:53] ]
[2025-10-09 14:18:53] 2025-10-09 18:18:03,304 | INFO     | transferring file log.46676269._015002.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837331686/log.46676269._015002.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-09 14:18:53] 2025-10-09 18:18:03,304 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837331686/log.46676269._015002.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._015002.job
[2025-10-09 14:18:53] 2025-10-09 18:18:03,325 | INFO     | adding to output.list: log.46676269._015002.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/01/log.46676269._015002.job.log.tg
[2025-10-09 14:18:53] 2025-10-09 18:18:03,326 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 14:18:53] 2025-10-09 18:18:03,326 | INFO     | summary of transferred files:
[2025-10-09 14:18:53] 2025-10-09 18:18:03,326 | INFO     |  -- lfn=log.46676269._015002.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 14:18:53] 2025-10-09 18:18:03,327 | INFO     | stage-out finished correctly
[2025-10-09 14:18:53] 2025-10-09 18:18:04,473 | INFO     | monitor loop #329: job 0:6837331686 is in state 'finished'
[2025-10-09 14:18:53] 2025-10-09 18:18:04,473 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:18:53] 2025-10-09 18:18:04,573 | INFO     | time since job start (4403s) is within the limit (172800.0s)
[2025-10-09 14:18:53] 2025-10-09 18:18:05,238 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 14:18:53] 2025-10-09 18:18:06,578 | INFO     | time since job start (4405s) is within the limit (172800.0s)
[2025-10-09 14:18:53] 2025-10-09 18:18:06,990 | INFO     | monitor loop #330: job 0:6837331686 is in state 'finished'
[2025-10-09 14:18:53] 2025-10-09 18:18:06,990 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:18:53] 2025-10-09 18:18:08,200 | INFO     | job 6837331686 has state=finished
[2025-10-09 14:18:53] 2025-10-09 18:18:08,200 | INFO     | preparing for final server update for job 6837331686 in state='finished'
[2025-10-09 14:18:53] 2025-10-09 18:18:08,201 | INFO     | this job has now completed (state=finished)
[2025-10-09 14:18:53] 2025-10-09 18:18:08,201 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 14:18:53] 2025-10-09 18:18:08,201 | INFO     | log transfer has been attempted: DONE
[2025-10-09 14:18:53] 2025-10-09 18:18:08,201 | INFO     | job 6837331686 has finished - writing final server update
[2025-10-09 14:18:53] 2025-10-09 18:18:08,202 | INFO     | total number of processed events: 400 (read)
[2025-10-09 14:18:53] 2025-10-09 18:18:08,203 | INFO     | executing command: lscpu
[2025-10-09 14:18:53] 2025-10-09 18:18:08,229 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 14:18:53] 2025-10-09 18:18:08,584 | INFO     | time since job start (4407s) is within the limit (172800.0s)
[2025-10-09 14:18:53] 2025-10-09 18:18:09,493 | INFO     | monitor loop #331: job 0:6837331686 is in state 'finished'
[2025-10-09 14:18:53] 2025-10-09 18:18:09,493 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:18:53] 2025-10-09 18:18:10,589 | INFO     | time since job start (4409s) is within the limit (172800.0s)
[2025-10-09 14:18:53] 2025-10-09 18:18:12,002 | INFO     | monitor loop #332: job 0:6837331686 is in state 'finished'
[2025-10-09 14:18:53] 2025-10-09 18:18:12,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:18:53] 2025-10-09 18:18:12,594 | INFO     | time since job start (4411s) is within the limit (172800.0s)
[2025-10-09 14:18:53] 2025-10-09 18:18:13,319 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-09 14:18:53] 2025-10-09 18:18:13,323 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-09 14:18:53] 2025-10-09 18:18:13,325 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837331686/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 14:18:53] 2025-10-09 18:18:13,326 | INFO     | extracted standard info from prmon json
[2025-10-09 14:18:53] 2025-10-09 18:18:13,326 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 14:18:53] 2025-10-09 18:18:13,326 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 14:18:53] 2025-10-09 18:18:13,327 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 14:18:53] 2025-10-09 18:18:13,327 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 14:18:53] 2025-10-09 18:18:13,329 | INFO     | fitting pss+swap vs Time
[2025-10-09 14:18:53] 2025-10-09 18:18:13,329 | INFO     | sum of square deviations: 85136480.0
[2025-10-09 14:18:53] 2025-10-09 18:18:13,329 | INFO     | sum of deviations: -1974943564.0000002
[2025-10-09 14:18:53] 2025-10-09 18:18:13,329 | INFO     | mean x: 1760031767.0
[2025-10-09 14:18:53] 2025-10-09 18:18:13,329 | INFO     | mean y: 2687251.6615384617
[2025-10-09 14:18:53] 2025-10-09 18:18:13,330 | INFO     | -- intersect: 40830818866.59556
[2025-10-09 14:18:53] 2025-10-09 18:18:13,330 | INFO     | intersect: 40830818866.59556
[2025-10-09 14:18:53] 2025-10-09 18:18:13,330 | INFO     | chi2: 0.03507586087825871
[2025-10-09 14:18:53] 2025-10-09 18:18:13,330 | INFO     | -- intersect: 40830818866.59556
[2025-10-09 14:18:53] 2025-10-09 18:18:13,330 | INFO     | current memory leak: -23.20 B/s (using 65 data points, chi2=0.04)
[2025-10-09 14:18:53] 2025-10-09 18:18:13,331 | INFO     | could have reported an average CPU frequency of 2032 MHz (6 samples)
[2025-10-09 14:18:53] 2025-10-09 18:18:13,331 | INFO     | ..............................
[2025-10-09 14:18:53] 2025-10-09 18:18:13,331 | INFO     | . Timing measurements:
[2025-10-09 14:18:53] 2025-10-09 18:18:13,331 | INFO     | . get job = 0 s
[2025-10-09 14:18:53] 2025-10-09 18:18:13,331 | INFO     | . initial setup = 2 s
[2025-10-09 14:18:53] 2025-10-09 18:18:13,331 | INFO     | . payload setup = 7 s
[2025-10-09 14:18:53] 2025-10-09 18:18:13,331 | INFO     | . stage-in = 0 s
[2025-10-09 14:18:53] 2025-10-09 18:18:13,331 | INFO     | . payload execution = 4374 s
[2025-10-09 14:18:53] 2025-10-09 18:18:13,332 | INFO     | . stage-out = 0 s
[2025-10-09 14:18:53] 2025-10-09 18:18:13,332 | INFO     | . log creation = 0 s
[2025-10-09 14:18:53] 2025-10-09 18:18:13,332 | INFO     | ..............................
[2025-10-09 14:18:53] 2025-10-09 18:18:13,413 | INFO     | 
[2025-10-09 14:18:53] 2025-10-09 18:18:13,413 | INFO     | job summary report
[2025-10-09 14:18:53] 2025-10-09 18:18:13,413 | INFO     | --------------------------------------------------
[2025-10-09 14:18:53] 2025-10-09 18:18:13,413 | INFO     | PanDA job id: 6837331686
[2025-10-09 14:18:53] 2025-10-09 18:18:13,414 | INFO     | task id: 46676269
[2025-10-09 14:18:53] 2025-10-09 18:18:13,414 | INFO     | errors: (none)
[2025-10-09 14:18:53] 2025-10-09 18:18:13,414 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 14:18:53] 2025-10-09 18:18:13,414 | INFO     | pilot state: finished 
[2025-10-09 14:18:53] 2025-10-09 18:18:13,414 | INFO     | transexitcode: 0
[2025-10-09 14:18:53] 2025-10-09 18:18:13,414 | INFO     | exeerrorcode: 0
[2025-10-09 14:18:53] 2025-10-09 18:18:13,415 | INFO     | exeerrordiag: 
[2025-10-09 14:18:53] 2025-10-09 18:18:13,415 | INFO     | exitcode: 0
[2025-10-09 14:18:53] 2025-10-09 18:18:13,415 | INFO     | exitmsg: OK
[2025-10-09 14:18:53] 2025-10-09 18:18:13,415 | INFO     | cpuconsumptiontime: 47476 s
[2025-10-09 14:18:53] 2025-10-09 18:18:13,415 | INFO     | nevents: 400
[2025-10-09 14:18:53] 2025-10-09 18:18:13,415 | INFO     | neventsw: 0
[2025-10-09 14:18:53] 2025-10-09 18:18:13,415 | INFO     | pid: 3159
[2025-10-09 14:18:53] 2025-10-09 18:18:13,415 | INFO     | pgrp: 3159
[2025-10-09 14:18:53] 2025-10-09 18:18:13,415 | INFO     | corecount: 12
[2025-10-09 14:18:53] 2025-10-09 18:18:13,415 | INFO     | event service: False
[2025-10-09 14:18:53] 2025-10-09 18:18:13,416 | INFO     | sizes: {0: 2348855, 5: 2349117, 11: 2349173, 4385: 2375220, 4386: 2384218, 4387: 2384274, 4396: 2384596}
[2025-10-09 14:18:53] 2025-10-09 18:18:13,416 | INFO     | --------------------------------------------------
[2025-10-09 14:18:53] 2025-10-09 18:18:13,416 | INFO     | 
[2025-10-09 14:18:53] 2025-10-09 18:18:13,416 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-09 14:18:53] 2025-10-09 18:18:13,440 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,441 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,441 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,441 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,441 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,441 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,441 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,442 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,442 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,442 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,442 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,442 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,443 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,443 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,443 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,443 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,443 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,443 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 14:18:53] 2025-10-09 18:18:13,444 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,444 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 14:18:53] 2025-10-09 18:18:13,444 | INFO     | job 6837331686 has completed (purged errors)
[2025-10-09 14:18:53] 2025-10-09 18:18:13,444 | INFO     | overall cleanup function is called
[2025-10-09 14:18:53] 2025-10-09 18:18:14,450 | INFO     | --- collectZombieJob: --- 10, [3159]
[2025-10-09 14:18:53] 2025-10-09 18:18:14,451 | INFO     | zombie collector waiting for pid 3159
[2025-10-09 14:18:53] 2025-10-09 18:18:14,451 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 14:18:53] 2025-10-09 18:18:14,451 | INFO     | collected zombie processes
[2025-10-09 14:18:53] 2025-10-09 18:18:14,451 | INFO     | will attempt to kill all subprocesses of pid=3159
[2025-10-09 14:18:53] 2025-10-09 18:18:14,544 | INFO     | process IDs to be killed: [3159] (in reverse order)
[2025-10-09 14:18:53] 2025-10-09 18:18:14,597 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 14:18:53] 2025-10-09 18:18:14,597 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 14:18:53] 2025-10-09 18:18:14,601 | INFO     | did not find any defunct processes belonging to 3159
[2025-10-09 14:18:53] 2025-10-09 18:18:14,604 | INFO     | did not find any defunct processes belonging to 3159
[2025-10-09 14:18:53] 2025-10-09 18:18:14,604 | INFO     | ready for new job
[2025-10-09 14:18:53] 2025-10-09 18:18:14,604 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 14:18:53] 2025-10-09 18:18:14,606 | INFO     | ***************************************
[2025-10-09 14:18:53] 2025-10-09 18:18:14,606 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 14:18:53] 2025-10-09 18:18:14,606 | INFO     | ***************************************
[2025-10-09 14:18:53] 2025-10-09 18:18:14,606 | INFO     | 
[2025-10-09 14:18:53] 2025-10-09 18:18:14,607 | INFO     | architecture information:
[2025-10-09 14:18:53] 2025-10-09 18:18:14,607 | INFO     | executing command: cat /etc/os-release
[2025-10-09 14:18:53] 2025-10-09 18:18:14,621 | INFO     | cat /etc/os-release:
[2025-10-09 14:18:53] NAME="CentOS Linux"
[2025-10-09 14:18:53] VERSION="7 (Core)"
[2025-10-09 14:18:53] ID="centos"
[2025-10-09 14:18:53] ID_LIKE="rhel fedora"
[2025-10-09 14:18:53] VERSION_ID="7"
[2025-10-09 14:18:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 14:18:53] ANSI_COLOR="0;31"
[2025-10-09 14:18:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 14:18:53] HOME_URL="https://www.centos.org/"
[2025-10-09 14:18:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 14:18:53] 
[2025-10-09 14:18:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 14:18:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 14:18:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 14:18:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 14:18:53] 
[2025-10-09 14:18:53] 2025-10-09 18:18:14,622 | INFO     | ***************************************
[2025-10-09 14:18:53] 2025-10-09 18:18:15,125 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-09 14:18:53] 2025-10-09 18:18:15,140 | INFO     | sufficient remaining disk space (29362225152 B)
[2025-10-09 14:18:53] 2025-10-09 18:18:15,141 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 14:18:53] 2025-10-09 18:18:15,141 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 14:18:53] 2025-10-09 18:18:15,141 | INFO     | update_server=False
[2025-10-09 14:18:53] 2025-10-09 18:18:15,141 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 14:18:53] 2025-10-09 18:18:15,142 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 14:18:53] 2025-10-09 18:18:15,360 | INFO     | all payload control threads have been joined
[2025-10-09 14:18:53] 2025-10-09 18:18:15,491 | INFO     | all data control threads have been joined
[2025-10-09 14:18:53] 2025-10-09 18:18:15,510 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 14:18:53] 2025-10-09 18:18:15,510 | INFO     | aborting loop
[2025-10-09 14:18:53] 2025-10-09 18:18:15,817 | INFO     | all job control threads have been joined
[2025-10-09 14:18:53] 2025-10-09 18:18:15,824 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 14:18:53] 2025-10-09 18:18:16,147 | INFO     | [job] retrieve thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:16,147 | INFO     | [job] queue monitor thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:16,366 | INFO     | [payload] control thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:16,393 | INFO     | [data] copytool_in thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:16,407 | INFO     | [payload] validate_post thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:16,427 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 14:18:53] 2025-10-09 18:18:16,497 | INFO     | [data] control thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:16,516 | INFO     | [job] job monitor thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:16,822 | INFO     | [job] control thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:17,027 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:17,097 | INFO     | [job] validate thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:17,316 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:17,402 | INFO     | [payload] failed_post thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:17,472 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:18,433 | INFO     | [data] copytool_out thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:19,830 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:25,291 | INFO     | job.realtimelogging is not enabled
[2025-10-09 14:18:53] 2025-10-09 18:18:26,302 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 14:18:53] 2025-10-09 18:18:45,793 | INFO     | PID=28631 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 14:18:53] 2025-10-09 18:18:45,794 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 14:18:53] 2025-10-09 18:18:45,794 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 14:18:53] 2025-10-09 18:18:45,794 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 14:18:53] 2025-10-09 18:18:47,917 | INFO     | [monitor] cgroup control has ended
[2025-10-09 14:18:53] 2025-10-09 18:18:48,493 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139969937016640)>', '<ExcThread(monitor, started 139969217685248)>']
[2025-10-09 14:18:53] 2025-10-09 18:18:48,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 14:18:53] 2025-10-09 18:18:48,810 | INFO     | [monitor] control thread has ended
[2025-10-09 14:18:53] 2025-10-09 18:18:53,512 | INFO     | all workflow threads have been joined
[2025-10-09 14:18:53] 2025-10-09 18:18:53,512 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 14:18:53] 2025-10-09 18:18:53,512 | INFO     | traces error code: 0
[2025-10-09 14:18:53] 2025-10-09 18:18:53,513 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 14:18:53] 2025-10-09 18:18:53,602 [wrapper] ==== pilot stdout END ====
[2025-10-09 14:18:53] 2025-10-09 18:18:53,606 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 14:18:53] 2025-10-09 18:18:53,610 [wrapper] pilotpid: 28631
[2025-10-09 14:18:53] 2025-10-09 18:18:53,614 [wrapper] Pilot exit status: 0
[2025-10-09 14:18:53] 2025-10-09 18:18:53,628 [wrapper] pandaids: 6837331686
[2025-10-09 14:18:53] 2025-10-09 18:18:53,666 [wrapper] cleanup supervisor_pilot 12612 28632
[2025-10-09 14:18:53] 2025-10-09 18:18:53,670 [wrapper] Test setup, not cleaning
[2025-10-09 14:18:53] 2025-10-09 18:18:53,674 [wrapper] apfmon messages muted
[2025-10-09 14:18:53] 2025-10-09 18:18:53,678 [wrapper] ==== wrapper stdout END ====
[2025-10-09 14:18:53] 2025-10-09 18:18:53,682 [wrapper] ==== wrapper stderr END ====
[2025-10-09 14:18:53]  *** Error codes and diagnostics ***
[2025-10-09 14:18:53]     "exeErrorCode": 0,
[2025-10-09 14:18:53]     "exeErrorDiag": "",
[2025-10-09 14:18:53]     "pilotErrorCode": 0,
[2025-10-09 14:18:53]     "pilotErrorDiag": "",
[2025-10-09 14:18:53]  *** Listing of results directory ***
[2025-10-09 14:18:53] total 413804
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas      5112 Oct  9 06:51 queuedata.json
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas    557409 Oct  9 06:52 pilot3.tar.gz
[2025-10-09 14:18:53] -rwx------ 1 boincer umatlas     36292 Oct  9 06:56 runpilot2-wrapper.sh
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas       100 Oct  9 13:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 14:18:53] -rwxr-xr-x 1 boincer umatlas      7986 Oct  9 13:04 run_atlas
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas       105 Oct  9 13:04 job.xml
[2025-10-09 14:18:53] -rw-r--r-- 2 boincer umatlas 222272063 Oct  9 13:04 EVNT.46676267._000615.pool.root.1
[2025-10-09 14:18:53] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 13:04 start_atlas.sh
[2025-10-09 14:18:53] drwxrwx--x 2 boincer umatlas      4096 Oct  9 13:04 shared
[2025-10-09 14:18:53] -rw-r--r-- 2 boincer umatlas    569677 Oct  9 13:04 input.tar.gz
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas         0 Oct  9 13:04 boinc_lockfile
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas      2549 Oct  9 13:04 pandaJob.out
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas    975462 Oct  9 13:04 agis_schedconf.cvmfs.json
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas   1560401 Oct  9 13:04 agis_ddmendpoints.agis.ALL.json
[2025-10-09 14:18:53] drwx------ 5 boincer umatlas      4096 Oct  9 13:04 pilot3
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas      5953 Oct  9 14:09 init_data.xml
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas 195489522 Oct  9 14:17 HITS.46676269._015002.pool.root.1
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas       530 Oct  9 14:17 boinc_task_state.xml
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas      1050 Oct  9 14:17 memory_monitor_summary.json
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas    396753 Oct  9 14:18 log.46676269._015002.job.log.tgz.1
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas      7851 Oct  9 14:18 heartbeat.json
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas        95 Oct  9 14:18 pilot_heartbeat.json
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas        27 Oct  9 14:18 wrapper_checkpoint.txt
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas      8192 Oct  9 14:18 boinc_mmap_file
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas      4818 Oct  9 14:18 pilotlog.txt
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas    640322 Oct  9 14:18 log.46676269._015002.job.log.1
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas       357 Oct  9 14:18 output.list
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas       620 Oct  9 14:18 runtime_log
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas   1054720 Oct  9 14:18 result.tar.gz
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas      8705 Oct  9 14:18 runtime_log.err
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas       660 Oct  9 14:18 1t1NDmcU3Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmAhNMDmzJmZHm.diag
[2025-10-09 14:18:53] -rw-r--r-- 1 boincer umatlas     22063 Oct  9 14:18 stderr.txt
[2025-10-09 14:18:53] HITS file was successfully produced:
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas 195489522 Oct  9 14:17 shared/HITS.pool.root.1
[2025-10-09 14:18:53]  *** Contents of shared directory: ***
[2025-10-09 14:18:53] total 409588
[2025-10-09 14:18:53] -rw-r--r-- 2 boincer umatlas 222272063 Oct  9 13:04 ATLAS.root_0
[2025-10-09 14:18:53] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 13:04 start_atlas.sh
[2025-10-09 14:18:53] -rw-r--r-- 2 boincer umatlas    569677 Oct  9 13:04 input.tar.gz
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas 195489522 Oct  9 14:17 HITS.pool.root.1
[2025-10-09 14:18:53] -rw------- 1 boincer umatlas   1054720 Oct  9 14:18 result.tar.gz
14:18:55 (24953): run_atlas exited; CPU time 47438.538319
14:18:55 (24953): called boinc_finish(0)

</stderr_txt>
]]>

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