Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:36:50 (25548): wrapper (7.7.26015): starting
12:36:50 (25548): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 12:36:50] Arguments: --nthreads 8
[2025-10-09 12:36:50] Threads: 8
[2025-10-09 12:36:50] Checking for CVMFS
[2025-10-09 12:36:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 12:36:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 12:36:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 12:36:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 12:36:51] 2.11.2.0 8539 48843 126064 151513 0 188 10916773 18432000 917 130560 0 42794887 99.971 2126404 37660 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 12:36:51] CVMFS is ok
[2025-10-09 12:36:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 12:36:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 12:36:51] Further information can be found at the LHC@home message board.
[2025-10-09 12:36:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 12:36:51] Checking for apptainer binary...
[2025-10-09 12:36:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 12:36:51] Running /usr/bin/apptainer --version
[2025-10-09 12:36:51] apptainer version 1.3.2-1.el7
[2025-10-09 12:36:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 12:36:52] c-206-1.aglt2.org
[2025-10-09 12:36:52] apptainer works
[2025-10-09 12:36:52] Set ATHENA_PROC_NUMBER=8
[2025-10-09 12:36:52] Set ATHENA_CORE_NUMBER=8
[2025-10-09 12:36:52] Starting ATLAS job with PandaID=6837329336
[2025-10-09 12:36:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 15:28:25]  *** The last 200 lines of the pilot log: ***
[2025-10-09 15:28:25] 2025-10-09 19:27:36,059 | INFO     | fitting pss+swap vs Time
[2025-10-09 15:28:25] 2025-10-09 19:27:36,059 | INFO     | sum of square deviations: 1470248962.0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,060 | INFO     | sum of deviations: 9666133200.0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,060 | INFO     | mean x: 1760032939.5
[2025-10-09 15:28:25] 2025-10-09 19:27:36,060 | INFO     | mean y: 2491805.7976190476
[2025-10-09 15:28:25] 2025-10-09 19:27:36,061 | INFO     | -- intersect: -11568822488.11075
[2025-10-09 15:28:25] 2025-10-09 19:27:36,061 | INFO     | intersect: -11568822488.11075
[2025-10-09 15:28:25] 2025-10-09 19:27:36,061 | INFO     | chi2: 2.113428790036103
[2025-10-09 15:28:25] 2025-10-09 19:27:36,061 | INFO     | sum of square deviations: 1342841922.0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,062 | INFO     | sum of deviations: 20650011823.999992
[2025-10-09 15:28:25] 2025-10-09 19:27:36,062 | INFO     | mean x: 1760032787.0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,062 | INFO     | mean y: 2504621.5582822086
[2025-10-09 15:28:25] 2025-10-09 19:27:36,062 | INFO     | -- intersect: -27063002692.993416
[2025-10-09 15:28:25] 2025-10-09 19:27:36,063 | INFO     | intersect: -27063002692.993416
[2025-10-09 15:28:25] 2025-10-09 19:27:36,063 | INFO     | chi2: 1.2985092895988142
[2025-10-09 15:28:25] 2025-10-09 19:27:36,063 | INFO     | current chi2=1.2985092895988142 (change=38.559117973564085 %)
[2025-10-09 15:28:25] 2025-10-09 19:27:36,063 | INFO     | sum of square deviations: 1223016419.5
[2025-10-09 15:28:25] 2025-10-09 19:27:36,064 | INFO     | sum of deviations: 19960439398.0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,064 | INFO     | mean x: 1760032634.5
[2025-10-09 15:28:25] 2025-10-09 19:27:36,064 | INFO     | mean y: 2503743.6329113925
[2025-10-09 15:28:25] 2025-10-09 19:27:36,064 | INFO     | -- intersect: -28722396576.022633
[2025-10-09 15:28:25] 2025-10-09 19:27:36,064 | INFO     | intersect: -28722396576.022633
[2025-10-09 15:28:25] 2025-10-09 19:27:36,065 | INFO     | chi2: 1.2995365192869799
[2025-10-09 15:28:25] 2025-10-09 19:27:36,065 | INFO     | current chi2=1.2995365192869799 (change=-0.0791083819264074 %)
[2025-10-09 15:28:25] 2025-10-09 19:27:36,065 | INFO     | right removable region: 157
[2025-10-09 15:28:25] 2025-10-09 19:27:36,065 | INFO     | sum of square deviations: 1342841922.0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,066 | INFO     | sum of deviations: -13939508025.0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,066 | INFO     | mean x: 1760033092.0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,066 | INFO     | mean y: 2519689.2208588957
[2025-10-09 15:28:25] 2025-10-09 19:27:36,066 | INFO     | -- intersect: 18272723358.212036
[2025-10-09 15:28:25] 2025-10-09 19:27:36,066 | INFO     | intersect: 18272723358.212036
[2025-10-09 15:28:25] 2025-10-09 19:27:36,067 | INFO     | chi2: 0.8603441114490005
[2025-10-09 15:28:25] 2025-10-09 19:27:36,067 | INFO     | current chi2=0.8603441114490005 (change=59.29154956603466 %)
[2025-10-09 15:28:25] 2025-10-09 19:27:36,067 | INFO     | sum of square deviations: 1223016419.5
[2025-10-09 15:28:25] 2025-10-09 19:27:36,068 | INFO     | sum of deviations: -14366686419.5
[2025-10-09 15:28:25] 2025-10-09 19:27:36,068 | INFO     | mean x: 1760033244.5
[2025-10-09 15:28:25] 2025-10-09 19:27:36,068 | INFO     | mean y: 2520192.1835443038
[2025-10-09 15:28:25] 2025-10-09 19:27:36,068 | INFO     | -- intersect: 20677504851.80419
[2025-10-09 15:28:25] 2025-10-09 19:27:36,068 | INFO     | intersect: 20677504851.80419
[2025-10-09 15:28:25] 2025-10-09 19:27:36,069 | INFO     | chi2: 0.8504946647424021
[2025-10-09 15:28:25] 2025-10-09 19:27:36,069 | INFO     | current chi2=0.8504946647424021 (change=1.1448264218383308 %)
[2025-10-09 15:28:25] 2025-10-09 19:27:36,069 | INFO     | left removable region: 20
[2025-10-09 15:28:25] 2025-10-09 19:27:36,069 | INFO     | sum of square deviations: 797291228.0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,070 | INFO     | sum of deviations: -826934726.9999995
[2025-10-09 15:28:25] 2025-10-09 19:27:36,070 | INFO     | mean x: 1760033214.0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,070 | INFO     | mean y: 2530860.9343065694
[2025-10-09 15:28:25] 2025-10-09 19:27:36,070 | INFO     | -- intersect: 1828002575.932307
[2025-10-09 15:28:25] 2025-10-09 19:27:36,070 | INFO     | intersect: 1828002575.932307
[2025-10-09 15:28:25] 2025-10-09 19:27:36,070 | INFO     | chi2: 0.007976197146465795
[2025-10-09 15:28:25] 2025-10-09 19:27:36,071 | INFO     | -- intersect: 1828002575.932307
[2025-10-09 15:28:25] 2025-10-09 19:27:36,071 | INFO     | current memory leak: -1.04 B/s (using 137 data points, chi2=0.01)
[2025-10-09 15:28:25] 2025-10-09 19:27:36,071 | INFO     | could have reported an average CPU frequency of 2408 MHz (9 samples)
[2025-10-09 15:28:25] 2025-10-09 19:27:36,071 | INFO     | ..............................
[2025-10-09 15:28:25] 2025-10-09 19:27:36,071 | INFO     | . Timing measurements:
[2025-10-09 15:28:25] 2025-10-09 19:27:36,071 | INFO     | . get job = 0 s
[2025-10-09 15:28:25] 2025-10-09 19:27:36,072 | INFO     | . initial setup = 2 s
[2025-10-09 15:28:25] 2025-10-09 19:27:36,072 | INFO     | . payload setup = 4 s
[2025-10-09 15:28:25] 2025-10-09 19:27:36,072 | INFO     | . stage-in = 0 s
[2025-10-09 15:28:25] 2025-10-09 19:27:36,072 | INFO     | . payload execution = 10203 s
[2025-10-09 15:28:25] 2025-10-09 19:27:36,072 | INFO     | . stage-out = 0 s
[2025-10-09 15:28:25] 2025-10-09 19:27:36,072 | INFO     | . log creation = 0 s
[2025-10-09 15:28:25] 2025-10-09 19:27:36,072 | INFO     | ..............................
[2025-10-09 15:28:25] 2025-10-09 19:27:36,158 | INFO     | 
[2025-10-09 15:28:25] 2025-10-09 19:27:36,158 | INFO     | job summary report
[2025-10-09 15:28:25] 2025-10-09 19:27:36,158 | INFO     | --------------------------------------------------
[2025-10-09 15:28:25] 2025-10-09 19:27:36,158 | INFO     | PanDA job id: 6837329336
[2025-10-09 15:28:25] 2025-10-09 19:27:36,158 | INFO     | task id: 46676269
[2025-10-09 15:28:25] 2025-10-09 19:27:36,158 | INFO     | errors: (none)
[2025-10-09 15:28:25] 2025-10-09 19:27:36,158 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 15:28:25] 2025-10-09 19:27:36,158 | INFO     | pilot state: finished 
[2025-10-09 15:28:25] 2025-10-09 19:27:36,159 | INFO     | transexitcode: 0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,159 | INFO     | exeerrorcode: 0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,159 | INFO     | exeerrordiag: 
[2025-10-09 15:28:25] 2025-10-09 19:27:36,159 | INFO     | exitcode: 0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,159 | INFO     | exitmsg: OK
[2025-10-09 15:28:25] 2025-10-09 19:27:36,159 | INFO     | cpuconsumptiontime: 76398 s
[2025-10-09 15:28:25] 2025-10-09 19:27:36,159 | INFO     | nevents: 400
[2025-10-09 15:28:25] 2025-10-09 19:27:36,159 | INFO     | neventsw: 0
[2025-10-09 15:28:25] 2025-10-09 19:27:36,159 | INFO     | pid: 5347
[2025-10-09 15:28:25] 2025-10-09 19:27:36,160 | INFO     | pgrp: 5347
[2025-10-09 15:28:25] 2025-10-09 19:27:36,160 | INFO     | corecount: 8
[2025-10-09 15:28:25] 2025-10-09 19:27:36,160 | INFO     | event service: False
[2025-10-09 15:28:25] 2025-10-09 19:27:36,160 | INFO     | sizes: {0: 2348742, 1: 2348856, 4: 2349146, 11: 2349174, 10212: 2377889, 10213: 2386887, 10216: 2387071, 10219: 2387329}
[2025-10-09 15:28:25] 2025-10-09 19:27:36,160 | INFO     | --------------------------------------------------
[2025-10-09 15:28:25] 2025-10-09 19:27:36,160 | INFO     | 
[2025-10-09 15:28:25] 2025-10-09 19:27:36,160 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-09 15:28:25] 2025-10-09 19:27:36,178 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,178 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,178 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,178 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,179 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,179 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,179 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,179 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,179 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,179 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,179 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,179 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,180 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,180 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,180 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,180 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,180 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,180 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 15:28:25] 2025-10-09 19:27:36,180 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,180 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 15:28:25] 2025-10-09 19:27:36,181 | INFO     | job 6837329336 has completed (purged errors)
[2025-10-09 15:28:25] 2025-10-09 19:27:36,181 | INFO     | overall cleanup function is called
[2025-10-09 15:28:25] 2025-10-09 19:27:37,188 | INFO     | --- collectZombieJob: --- 10, [5347]
[2025-10-09 15:28:25] 2025-10-09 19:27:37,188 | INFO     | zombie collector waiting for pid 5347
[2025-10-09 15:28:25] 2025-10-09 19:27:37,188 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 15:28:25] 2025-10-09 19:27:37,189 | INFO     | collected zombie processes
[2025-10-09 15:28:25] 2025-10-09 19:27:37,189 | INFO     | will attempt to kill all subprocesses of pid=5347
[2025-10-09 15:28:25] 2025-10-09 19:27:37,316 | INFO     | process IDs to be killed: [5347] (in reverse order)
[2025-10-09 15:28:25] 2025-10-09 19:27:37,359 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 15:28:25] 2025-10-09 19:27:37,360 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 15:28:25] 2025-10-09 19:27:37,362 | INFO     | did not find any defunct processes belonging to 5347
[2025-10-09 15:28:25] 2025-10-09 19:27:37,365 | INFO     | did not find any defunct processes belonging to 5347
[2025-10-09 15:28:25] 2025-10-09 19:27:37,365 | INFO     | ready for new job
[2025-10-09 15:28:25] 2025-10-09 19:27:37,365 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 15:28:25] 2025-10-09 19:27:37,366 | INFO     | ***************************************
[2025-10-09 15:28:25] 2025-10-09 19:27:37,367 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 15:28:25] 2025-10-09 19:27:37,367 | INFO     | ***************************************
[2025-10-09 15:28:25] 2025-10-09 19:27:37,367 | INFO     | 
[2025-10-09 15:28:25] 2025-10-09 19:27:37,368 | INFO     | architecture information:
[2025-10-09 15:28:25] 2025-10-09 19:27:37,368 | INFO     | executing command: cat /etc/os-release
[2025-10-09 15:28:25] 2025-10-09 19:27:37,381 | INFO     | cat /etc/os-release:
[2025-10-09 15:28:25] NAME="CentOS Linux"
[2025-10-09 15:28:25] VERSION="7 (Core)"
[2025-10-09 15:28:25] ID="centos"
[2025-10-09 15:28:25] ID_LIKE="rhel fedora"
[2025-10-09 15:28:25] VERSION_ID="7"
[2025-10-09 15:28:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 15:28:25] ANSI_COLOR="0;31"
[2025-10-09 15:28:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 15:28:25] HOME_URL="https://www.centos.org/"
[2025-10-09 15:28:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 15:28:25] 
[2025-10-09 15:28:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 15:28:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 15:28:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 15:28:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 15:28:25] 
[2025-10-09 15:28:25] 2025-10-09 19:27:37,381 | INFO     | ***************************************
[2025-10-09 15:28:25] 2025-10-09 19:27:37,885 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-09 15:28:25] 2025-10-09 19:27:37,901 | INFO     | sufficient remaining disk space (28005367808 B)
[2025-10-09 15:28:25] 2025-10-09 19:27:37,902 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 15:28:25] 2025-10-09 19:27:37,902 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 15:28:25] 2025-10-09 19:27:37,902 | INFO     | update_server=False
[2025-10-09 15:28:25] 2025-10-09 19:27:37,902 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 15:28:25] 2025-10-09 19:27:37,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 15:28:25] 2025-10-09 19:27:37,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 15:28:25] 2025-10-09 19:27:38,254 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-09 15:28:25] 2025-10-09 19:27:38,255 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-09 15:28:25] 2025-10-09 19:27:38,255 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 15:28:25] 2025-10-09 19:27:38,255 | INFO     | will abort loop
[2025-10-09 15:28:25] 2025-10-09 19:27:38,262 | INFO     | all job control threads have been joined
[2025-10-09 15:28:25] 2025-10-09 19:27:38,340 | INFO     | all payload control threads have been joined
[2025-10-09 15:28:25] 2025-10-09 19:27:38,565 | INFO     | all data control threads have been joined
[2025-10-09 15:28:25] 2025-10-09 19:27:38,813 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 15:28:25] 2025-10-09 19:27:38,907 | INFO     | [job] retrieve thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:38,908 | INFO     | [job] queue monitor thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:39,183 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:39,191 | INFO     | [job] validate thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:39,261 | INFO     | [job] job monitor thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:39,268 | INFO     | [job] control thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:39,310 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:39,345 | INFO     | [payload] control thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:39,396 | INFO     | [payload] validate_post thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:39,570 | INFO     | [data] control thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:39,768 | INFO     | [data] copytool_in thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:39,909 | INFO     | [data] copytool_out thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:40,242 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:40,390 | INFO     | [payload] failed_post thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:42,819 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:27:48,070 | INFO     | job.realtimelogging is not enabled
[2025-10-09 15:28:25] 2025-10-09 19:27:49,072 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 15:28:25] 2025-10-09 19:28:08,367 | INFO     | PID=29260 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 15:28:25] 2025-10-09 19:28:08,367 | INFO     | .. there are 3 such processes running
[2025-10-09 15:28:25] 2025-10-09 19:28:08,368 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 15:28:25] 2025-10-09 19:28:08,368 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 15:28:25] 2025-10-09 19:28:08,368 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 15:28:25] 2025-10-09 19:28:19,143 | INFO     | [monitor] cgroup control has ended
[2025-10-09 15:28:25] 2025-10-09 19:28:20,404 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139736781637440)>', '<ExcThread(monitor, started 139736316356352)>']
[2025-10-09 15:28:25] 2025-10-09 19:28:20,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 15:28:25] 2025-10-09 19:28:20,427 | INFO     | [monitor] control thread has ended
[2025-10-09 15:28:25] 2025-10-09 19:28:25,429 | INFO     | all workflow threads have been joined
[2025-10-09 15:28:25] 2025-10-09 19:28:25,429 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 15:28:25] 2025-10-09 19:28:25,430 | INFO     | traces error code: 0
[2025-10-09 15:28:25] 2025-10-09 19:28:25,430 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 15:28:25] 2025-10-09 19:28:25,526 [wrapper] ==== pilot stdout END ====
[2025-10-09 15:28:25] 2025-10-09 19:28:25,528 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 15:28:25] 2025-10-09 19:28:25,530 [wrapper] pilotpid: 29260
[2025-10-09 15:28:25] 2025-10-09 19:28:25,532 [wrapper] Pilot exit status: 0
[2025-10-09 15:28:25] 2025-10-09 19:28:25,539 [wrapper] pandaids: 6837329336
[2025-10-09 15:28:25] 2025-10-09 19:28:25,568 [wrapper] cleanup supervisor_pilot   971 29261
[2025-10-09 15:28:25] 2025-10-09 19:28:25,570 [wrapper] Test setup, not cleaning
[2025-10-09 15:28:25] 2025-10-09 19:28:25,572 [wrapper] apfmon messages muted
[2025-10-09 15:28:25] 2025-10-09 19:28:25,575 [wrapper] ==== wrapper stdout END ====
[2025-10-09 15:28:25] 2025-10-09 19:28:25,577 [wrapper] ==== wrapper stderr END ====
[2025-10-09 15:28:25]  *** Error codes and diagnostics ***
[2025-10-09 15:28:25]     "exeErrorCode": 0,
[2025-10-09 15:28:25]     "exeErrorDiag": "",
[2025-10-09 15:28:25]     "pilotErrorCode": 0,
[2025-10-09 15:28:25]     "pilotErrorDiag": "",
[2025-10-09 15:28:25]  *** Listing of results directory ***
[2025-10-09 15:28:25] total 409900
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas      5112 Oct  9 06:51 queuedata.json
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas    557409 Oct  9 06:52 pilot3.tar.gz
[2025-10-09 15:28:25] -rwx------ 1 boincer umatlas     36292 Oct  9 06:54 runpilot2-wrapper.sh
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas       100 Oct  9 12:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 15:28:25] -rwxr-xr-x 1 boincer umatlas      7986 Oct  9 12:36 run_atlas
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas       105 Oct  9 12:36 job.xml
[2025-10-09 15:28:25] -rw-r--r-- 2 boincer umatlas 219712299 Oct  9 12:36 EVNT.46676267._000585.pool.root.1
[2025-10-09 15:28:25] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 12:36 start_atlas.sh
[2025-10-09 15:28:25] drwxrwx--x 2 boincer umatlas      4096 Oct  9 12:36 shared
[2025-10-09 15:28:25] -rw-r--r-- 2 boincer umatlas    569681 Oct  9 12:36 input.tar.gz
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas         0 Oct  9 12:36 boinc_lockfile
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas      2550 Oct  9 12:36 pandaJob.out
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas    975462 Oct  9 12:37 agis_schedconf.cvmfs.json
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas   1560401 Oct  9 12:37 agis_ddmendpoints.agis.ALL.json
[2025-10-09 15:28:25] drwx------ 5 boincer umatlas      4096 Oct  9 12:37 pilot3
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas      5949 Oct  9 15:18 init_data.xml
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas 192401118 Oct  9 15:26 HITS.46676269._014274.pool.root.1
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas       530 Oct  9 15:27 boinc_task_state.xml
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas      1053 Oct  9 15:27 memory_monitor_summary.json
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas    424231 Oct  9 15:27 log.46676269._014274.job.log.tgz.1
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas      7851 Oct  9 15:27 heartbeat.json
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas        95 Oct  9 15:28 pilot_heartbeat.json
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas        28 Oct  9 15:28 wrapper_checkpoint.txt
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas      8192 Oct  9 15:28 boinc_mmap_file
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas      5079 Oct  9 15:28 pilotlog.txt
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas   1438298 Oct  9 15:28 log.46676269._014274.job.log.1
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas       357 Oct  9 15:28 output.list
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas       620 Oct  9 15:28 runtime_log
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas   1884160 Oct  9 15:28 result.tar.gz
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas      8699 Oct  9 15:28 runtime_log.err
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas       660 Oct  9 15:28 GuoNDmeT3Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmqaNMDmhfe7Km.diag
[2025-10-09 15:28:25] -rw-r--r-- 1 boincer umatlas     20885 Oct  9 15:28 stderr.txt
[2025-10-09 15:28:25] HITS file was successfully produced:
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas 192401118 Oct  9 15:26 shared/HITS.pool.root.1
[2025-10-09 15:28:25]  *** Contents of shared directory: ***
[2025-10-09 15:28:25] total 404876
[2025-10-09 15:28:25] -rw-r--r-- 2 boincer umatlas 219712299 Oct  9 12:36 ATLAS.root_0
[2025-10-09 15:28:25] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 12:36 start_atlas.sh
[2025-10-09 15:28:25] -rw-r--r-- 2 boincer umatlas    569681 Oct  9 12:36 input.tar.gz
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas 192401118 Oct  9 15:26 HITS.pool.root.1
[2025-10-09 15:28:25] -rw------- 1 boincer umatlas   1884160 Oct  9 15:28 result.tar.gz
15:28:27 (25548): run_atlas exited; CPU time 76609.792547
15:28:27 (25548): called boinc_finish(0)

</stderr_txt>
]]>

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