Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:56:24 (28523): wrapper (7.7.26015): starting
12:56:24 (28523): wrapper: running run_atlas (--nthreads 12)
[2025-10-09 12:56:24] Arguments: --nthreads 12
[2025-10-09 12:56:24] Threads: 12
[2025-10-09 12:56:24] Checking for CVMFS
[2025-10-09 12:56:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 12:56:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 12:56:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 12:56:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 12:56:25] 2.11.2.0 2979 218844 97388 151513 2 188 11137939 20275201 1 130560 1 104073338 99.984 12991245 12245 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 12:56:25] CVMFS is ok
[2025-10-09 12:56:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 12:56:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 12:56:25] Further information can be found at the LHC@home message board.
[2025-10-09 12:56:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 12:56:25] Checking for apptainer binary...
[2025-10-09 12:56:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 12:56:25] Running /usr/bin/apptainer --version
[2025-10-09 12:56:25] apptainer version 1.3.2-1.el7
[2025-10-09 12:56:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 12:56:26] c-205-21.aglt2.org
[2025-10-09 12:56:26] apptainer works
[2025-10-09 12:56:26] Set ATHENA_PROC_NUMBER=12
[2025-10-09 12:56:26] Set ATHENA_CORE_NUMBER=12
[2025-10-09 12:56:26] Starting ATLAS job with PandaID=6837331606
[2025-10-09 12:56:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 14:08:54]  *** The last 200 lines of the pilot log: ***
[2025-10-09 14:08:54]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837331606/log.46676269._014922.job.log.tgz.1
[2025-10-09 14:08:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/10/log.46676269._014922.job.log.tgz.1
[2025-10-09 14:08:54]  workdir=None
[2025-10-09 14:08:54] ]
[2025-10-09 14:08:54] 2025-10-09 18:08:00,246 | INFO     | transferring file log.46676269._014922.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837331606/log.46676269._014922.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-09 14:08:54] 2025-10-09 18:08:00,247 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837331606/log.46676269._014922.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._014922.job
[2025-10-09 14:08:54] 2025-10-09 18:08:00,270 | INFO     | adding to output.list: log.46676269._014922.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/10/log.46676269._014922.job.log.tg
[2025-10-09 14:08:54] 2025-10-09 18:08:00,271 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 14:08:54] 2025-10-09 18:08:00,271 | INFO     | summary of transferred files:
[2025-10-09 14:08:54] 2025-10-09 18:08:00,272 | INFO     |  -- lfn=log.46676269._014922.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 14:08:54] 2025-10-09 18:08:00,272 | INFO     | stage-out finished correctly
[2025-10-09 14:08:54] 2025-10-09 18:08:01,439 | INFO     | time since job start (4280s) is within the limit (172800.0s)
[2025-10-09 14:08:54] 2025-10-09 18:08:03,239 | WARNING  | process 6337 can no longer be monitored (due to stat problems) - aborting
[2025-10-09 14:08:54] 2025-10-09 18:08:03,239 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837331606/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 14:08:54] 2025-10-09 18:08:03,327 | INFO     | number of running child processes to parent process 6337: 1
[2025-10-09 14:08:54] 2025-10-09 18:08:03,327 | INFO     | maximum number of monitored processes: 6
[2025-10-09 14:08:54] 2025-10-09 18:08:03,444 | INFO     | time since job start (4282s) is within the limit (172800.0s)
[2025-10-09 14:08:54] 2025-10-09 18:08:03,700 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 14:08:54] 2025-10-09 18:08:03,785 | INFO     | job 6837331606 has state=finished
[2025-10-09 14:08:54] 2025-10-09 18:08:03,785 | INFO     | preparing for final server update for job 6837331606 in state='finished'
[2025-10-09 14:08:54] 2025-10-09 18:08:03,786 | INFO     | this job has now completed (state=finished)
[2025-10-09 14:08:54] 2025-10-09 18:08:03,786 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 14:08:54] 2025-10-09 18:08:03,786 | INFO     | log transfer has been attempted: DONE
[2025-10-09 14:08:54] 2025-10-09 18:08:03,786 | INFO     | job 6837331606 has finished - writing final server update
[2025-10-09 14:08:54] 2025-10-09 18:08:03,787 | INFO     | total number of processed events: 400 (read)
[2025-10-09 14:08:54] 2025-10-09 18:08:03,788 | INFO     | executing command: lscpu
[2025-10-09 14:08:54] 2025-10-09 18:08:03,814 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 14:08:54] 2025-10-09 18:08:04,571 | INFO     | PID=32210 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 14:08:54] 2025-10-09 18:08:05,572 | INFO     | time since job start (4284s) is within the limit (172800.0s)
[2025-10-09 14:08:54] 2025-10-09 18:08:05,829 | INFO     | monitor loop #319: job 0:6837331606 is in state 'finished'
[2025-10-09 14:08:54] 2025-10-09 18:08:05,830 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:08:54] 2025-10-09 18:08:07,577 | INFO     | time since job start (4286s) is within the limit (172800.0s)
[2025-10-09 14:08:54] 2025-10-09 18:08:08,332 | INFO     | monitor loop #320: job 0:6837331606 is in state 'finished'
[2025-10-09 14:08:54] 2025-10-09 18:08:08,333 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:08:54] 2025-10-09 18:08:08,619 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-09 14:08:54] 2025-10-09 18:08:08,622 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.8333333333333
[2025-10-09 14:08:54] 2025-10-09 18:08:08,623 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837331606/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 14:08:54] 2025-10-09 18:08:08,624 | INFO     | extracted standard info from prmon json
[2025-10-09 14:08:54] 2025-10-09 18:08:08,624 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 14:08:54] 2025-10-09 18:08:08,624 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 14:08:54] 2025-10-09 18:08:08,624 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 14:08:54] 2025-10-09 18:08:08,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 14:08:54] 2025-10-09 18:08:08,626 | INFO     | fitting pss+swap vs Time
[2025-10-09 14:08:54] 2025-10-09 18:08:08,626 | INFO     | sum of square deviations: 77515872.0
[2025-10-09 14:08:54] 2025-10-09 18:08:08,626 | INFO     | sum of deviations: 1356426133.9999998
[2025-10-09 14:08:54] 2025-10-09 18:08:08,626 | INFO     | mean x: 1760031227.0
[2025-10-09 14:08:54] 2025-10-09 18:08:08,627 | INFO     | mean y: 2660986.6507936507
[2025-10-09 14:08:54] 2025-10-09 18:08:08,627 | INFO     | -- intersect: -30795578023.791943
[2025-10-09 14:08:54] 2025-10-09 18:08:08,627 | INFO     | intersect: -30795578023.791943
[2025-10-09 14:08:54] 2025-10-09 18:08:08,627 | INFO     | chi2: 0.01230049493495823
[2025-10-09 14:08:54] 2025-10-09 18:08:08,627 | INFO     | -- intersect: -30795578023.791943
[2025-10-09 14:08:54] 2025-10-09 18:08:08,627 | INFO     | current memory leak: 17.50 B/s (using 63 data points, chi2=0.01)
[2025-10-09 14:08:54] 2025-10-09 18:08:08,628 | INFO     | could have reported an average CPU frequency of 2019 MHz (6 samples)
[2025-10-09 14:08:54] 2025-10-09 18:08:08,628 | INFO     | ..............................
[2025-10-09 14:08:54] 2025-10-09 18:08:08,628 | INFO     | . Timing measurements:
[2025-10-09 14:08:54] 2025-10-09 18:08:08,628 | INFO     | . get job = 0 s
[2025-10-09 14:08:54] 2025-10-09 18:08:08,628 | INFO     | . initial setup = 2 s
[2025-10-09 14:08:54] 2025-10-09 18:08:08,628 | INFO     | . payload setup = 7 s
[2025-10-09 14:08:54] 2025-10-09 18:08:08,628 | INFO     | . stage-in = 0 s
[2025-10-09 14:08:54] 2025-10-09 18:08:08,628 | INFO     | . payload execution = 4251 s
[2025-10-09 14:08:54] 2025-10-09 18:08:08,629 | INFO     | . stage-out = 0 s
[2025-10-09 14:08:54] 2025-10-09 18:08:08,629 | INFO     | . log creation = 0 s
[2025-10-09 14:08:54] 2025-10-09 18:08:08,629 | INFO     | ..............................
[2025-10-09 14:08:54] 2025-10-09 18:08:08,713 | INFO     | 
[2025-10-09 14:08:54] 2025-10-09 18:08:08,713 | INFO     | job summary report
[2025-10-09 14:08:54] 2025-10-09 18:08:08,713 | INFO     | --------------------------------------------------
[2025-10-09 14:08:54] 2025-10-09 18:08:08,714 | INFO     | PanDA job id: 6837331606
[2025-10-09 14:08:54] 2025-10-09 18:08:08,714 | INFO     | task id: 46676269
[2025-10-09 14:08:54] 2025-10-09 18:08:08,714 | INFO     | errors: (none)
[2025-10-09 14:08:54] 2025-10-09 18:08:08,714 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 14:08:54] 2025-10-09 18:08:08,714 | INFO     | pilot state: finished 
[2025-10-09 14:08:54] 2025-10-09 18:08:08,714 | INFO     | transexitcode: 0
[2025-10-09 14:08:54] 2025-10-09 18:08:08,715 | INFO     | exeerrorcode: 0
[2025-10-09 14:08:54] 2025-10-09 18:08:08,715 | INFO     | exeerrordiag: 
[2025-10-09 14:08:54] 2025-10-09 18:08:08,715 | INFO     | exitcode: 0
[2025-10-09 14:08:54] 2025-10-09 18:08:08,715 | INFO     | exitmsg: OK
[2025-10-09 14:08:54] 2025-10-09 18:08:08,715 | INFO     | cpuconsumptiontime: 45561 s
[2025-10-09 14:08:54] 2025-10-09 18:08:08,715 | INFO     | nevents: 400
[2025-10-09 14:08:54] 2025-10-09 18:08:08,715 | INFO     | neventsw: 0
[2025-10-09 14:08:54] 2025-10-09 18:08:08,716 | INFO     | pid: 6337
[2025-10-09 14:08:54] 2025-10-09 18:08:08,716 | INFO     | pgrp: 6337
[2025-10-09 14:08:54] 2025-10-09 18:08:08,716 | INFO     | corecount: 12
[2025-10-09 14:08:54] 2025-10-09 18:08:08,716 | INFO     | event service: False
[2025-10-09 14:08:54] 2025-10-09 18:08:08,716 | INFO     | sizes: {0: 2348685, 1: 2348884, 6: 2349146, 11: 2349174, 4262: 2384191, 4266: 2384191, 4271: 2384513}
[2025-10-09 14:08:54] 2025-10-09 18:08:08,716 | INFO     | --------------------------------------------------
[2025-10-09 14:08:54] 2025-10-09 18:08:08,717 | INFO     | 
[2025-10-09 14:08:54] 2025-10-09 18:08:08,717 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-09 14:08:54] 2025-10-09 18:08:08,740 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,741 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,741 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,741 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,741 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,741 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,742 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,742 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,742 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,742 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,742 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,742 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,743 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,743 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,743 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,743 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,743 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,743 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 14:08:54] 2025-10-09 18:08:08,744 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,744 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 14:08:54] 2025-10-09 18:08:08,744 | INFO     | job 6837331606 has completed (purged errors)
[2025-10-09 14:08:54] 2025-10-09 18:08:08,744 | INFO     | overall cleanup function is called
[2025-10-09 14:08:54] 2025-10-09 18:08:09,753 | INFO     | --- collectZombieJob: --- 10, [6337]
[2025-10-09 14:08:54] 2025-10-09 18:08:09,784 | INFO     | zombie collector waiting for pid 6337
[2025-10-09 14:08:54] 2025-10-09 18:08:09,785 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 14:08:54] 2025-10-09 18:08:09,785 | INFO     | collected zombie processes
[2025-10-09 14:08:54] 2025-10-09 18:08:09,785 | INFO     | will attempt to kill all subprocesses of pid=6337
[2025-10-09 14:08:54] 2025-10-09 18:08:09,875 | INFO     | process IDs to be killed: [6337] (in reverse order)
[2025-10-09 14:08:54] 2025-10-09 18:08:09,926 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 14:08:54] 2025-10-09 18:08:09,926 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 14:08:54] 2025-10-09 18:08:09,930 | INFO     | did not find any defunct processes belonging to 6337
[2025-10-09 14:08:54] 2025-10-09 18:08:09,933 | INFO     | did not find any defunct processes belonging to 6337
[2025-10-09 14:08:54] 2025-10-09 18:08:09,933 | INFO     | ready for new job
[2025-10-09 14:08:54] 2025-10-09 18:08:09,933 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 14:08:54] 2025-10-09 18:08:09,934 | INFO     | ***************************************
[2025-10-09 14:08:54] 2025-10-09 18:08:09,934 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 14:08:54] 2025-10-09 18:08:09,934 | INFO     | ***************************************
[2025-10-09 14:08:54] 2025-10-09 18:08:09,935 | INFO     | 
[2025-10-09 14:08:54] 2025-10-09 18:08:09,935 | INFO     | architecture information:
[2025-10-09 14:08:54] 2025-10-09 18:08:09,936 | INFO     | executing command: cat /etc/os-release
[2025-10-09 14:08:54] 2025-10-09 18:08:09,951 | INFO     | cat /etc/os-release:
[2025-10-09 14:08:54] NAME="CentOS Linux"
[2025-10-09 14:08:54] VERSION="7 (Core)"
[2025-10-09 14:08:54] ID="centos"
[2025-10-09 14:08:54] ID_LIKE="rhel fedora"
[2025-10-09 14:08:54] VERSION_ID="7"
[2025-10-09 14:08:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 14:08:54] ANSI_COLOR="0;31"
[2025-10-09 14:08:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 14:08:54] HOME_URL="https://www.centos.org/"
[2025-10-09 14:08:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 14:08:54] 
[2025-10-09 14:08:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 14:08:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 14:08:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 14:08:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 14:08:54] 
[2025-10-09 14:08:54] 2025-10-09 18:08:09,951 | INFO     | ***************************************
[2025-10-09 14:08:54] 2025-10-09 18:08:10,454 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-09 14:08:54] 2025-10-09 18:08:10,470 | INFO     | sufficient remaining disk space (29368516608 B)
[2025-10-09 14:08:54] 2025-10-09 18:08:10,471 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 14:08:54] 2025-10-09 18:08:10,471 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 14:08:54] 2025-10-09 18:08:10,471 | INFO     | update_server=False
[2025-10-09 14:08:54] 2025-10-09 18:08:10,471 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 14:08:54] 2025-10-09 18:08:10,472 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 14:08:54] 2025-10-09 18:08:10,472 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 14:08:54] 2025-10-09 18:08:10,836 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-09 14:08:54] 2025-10-09 18:08:10,836 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-09 14:08:54] 2025-10-09 18:08:10,836 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 14:08:54] 2025-10-09 18:08:10,836 | INFO     | will abort loop
[2025-10-09 14:08:54] 2025-10-09 18:08:10,869 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 14:08:54] 2025-10-09 18:08:11,001 | INFO     | all data control threads have been joined
[2025-10-09 14:08:54] 2025-10-09 18:08:11,477 | INFO     | [job] retrieve thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:11,477 | INFO     | [job] queue monitor thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:11,641 | INFO     | all job control threads have been joined
[2025-10-09 14:08:54] 2025-10-09 18:08:11,729 | INFO     | [payload] validate_post thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:11,795 | INFO     | [data] copytool_in thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:11,842 | INFO     | [job] job monitor thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:11,879 | INFO     | all payload control threads have been joined
[2025-10-09 14:08:54] 2025-10-09 18:08:12,007 | INFO     | [data] control thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:12,049 | INFO     | [payload] failed_post thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:12,444 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:12,547 | INFO     | [job] validate thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:12,565 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:12,647 | INFO     | [job] control thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:12,785 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:12,875 | INFO     | [data] copytool_out thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:12,884 | INFO     | [payload] control thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:14,478 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:21,041 | INFO     | job.realtimelogging is not enabled
[2025-10-09 14:08:54] 2025-10-09 18:08:22,046 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 14:08:54] 2025-10-09 18:08:40,786 | INFO     | PID=32210 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 14:08:54] 2025-10-09 18:08:40,787 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 14:08:54] 2025-10-09 18:08:40,787 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 14:08:54] 2025-10-09 18:08:40,787 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 14:08:54] 2025-10-09 18:08:48,070 | INFO     | [monitor] cgroup control has ended
[2025-10-09 14:08:54] 2025-10-09 18:08:49,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139729042896704)>', '<ExcThread(monitor, started 139728103929600)>']
[2025-10-09 14:08:54] 2025-10-09 18:08:49,824 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 14:08:54] 2025-10-09 18:08:49,825 | INFO     | [monitor] control thread has ended
[2025-10-09 14:08:54] 2025-10-09 18:08:54,512 | INFO     | all workflow threads have been joined
[2025-10-09 14:08:54] 2025-10-09 18:08:54,513 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 14:08:54] 2025-10-09 18:08:54,513 | INFO     | traces error code: 0
[2025-10-09 14:08:54] 2025-10-09 18:08:54,513 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 14:08:54] 2025-10-09 18:08:54,605 [wrapper] ==== pilot stdout END ====
[2025-10-09 14:08:54] 2025-10-09 18:08:54,609 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 14:08:54] 2025-10-09 18:08:54,613 [wrapper] pilotpid: 32210
[2025-10-09 14:08:54] 2025-10-09 18:08:54,617 [wrapper] Pilot exit status: 0
[2025-10-09 14:08:54] 2025-10-09 18:08:54,632 [wrapper] pandaids: 6837331606
[2025-10-09 14:08:54] 2025-10-09 18:08:54,680 [wrapper] cleanup supervisor_pilot  9885 32211
[2025-10-09 14:08:54] 2025-10-09 18:08:54,684 [wrapper] Test setup, not cleaning
[2025-10-09 14:08:54] 2025-10-09 18:08:54,688 [wrapper] apfmon messages muted
[2025-10-09 14:08:54] 2025-10-09 18:08:54,691 [wrapper] ==== wrapper stdout END ====
[2025-10-09 14:08:54] 2025-10-09 18:08:54,695 [wrapper] ==== wrapper stderr END ====
[2025-10-09 14:08:54]  *** Error codes and diagnostics ***
[2025-10-09 14:08:54]     "exeErrorCode": 0,
[2025-10-09 14:08:54]     "exeErrorDiag": "",
[2025-10-09 14:08:54]     "pilotErrorCode": 0,
[2025-10-09 14:08:54]     "pilotErrorDiag": "",
[2025-10-09 14:08:54]  *** Listing of results directory ***
[2025-10-09 14:08:54] total 408400
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas      5112 Oct  9 06:51 queuedata.json
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas    557409 Oct  9 06:52 pilot3.tar.gz
[2025-10-09 14:08:54] -rwx------ 1 boincer umatlas     36292 Oct  9 06:55 runpilot2-wrapper.sh
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas       100 Oct  9 12:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 14:08:54] -rwxr-xr-x 1 boincer umatlas      7986 Oct  9 12:56 run_atlas
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas       105 Oct  9 12:56 job.xml
[2025-10-09 14:08:54] -rw-r--r-- 2 boincer umatlas 220864947 Oct  9 12:56 EVNT.46676267._000611.pool.root.1
[2025-10-09 14:08:54] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 12:56 start_atlas.sh
[2025-10-09 14:08:54] drwxrwx--x 2 boincer umatlas      4096 Oct  9 12:56 shared
[2025-10-09 14:08:54] -rw-r--r-- 2 boincer umatlas    569678 Oct  9 12:56 input.tar.gz
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas         0 Oct  9 12:56 boinc_lockfile
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas      2550 Oct  9 12:56 pandaJob.out
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas    975462 Oct  9 12:56 agis_schedconf.cvmfs.json
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas   1560401 Oct  9 12:56 agis_ddmendpoints.agis.ALL.json
[2025-10-09 14:08:54] drwx------ 5 boincer umatlas      4096 Oct  9 12:56 pilot3
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas      5953 Oct  9 14:01 init_data.xml
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas 191405296 Oct  9 14:07 HITS.46676269._014922.pool.root.1
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas       529 Oct  9 14:07 boinc_task_state.xml
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas      1048 Oct  9 14:07 memory_monitor_summary.json
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas    389105 Oct  9 14:08 log.46676269._014922.job.log.tgz.1
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas      7849 Oct  9 14:08 heartbeat.json
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas        95 Oct  9 14:08 pilot_heartbeat.json
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas      8192 Oct  9 14:08 boinc_mmap_file
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas        27 Oct  9 14:08 wrapper_checkpoint.txt
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas      5004 Oct  9 14:08 pilotlog.txt
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas    624939 Oct  9 14:08 log.46676269._014922.job.log.1
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas       357 Oct  9 14:08 output.list
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas       620 Oct  9 14:08 runtime_log
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas   1034240 Oct  9 14:08 result.tar.gz
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas       659 Oct  9 14:08 YzeMDmcU3Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmEgNMDm5XQ71n.diag
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas      8705 Oct  9 14:08 runtime_log.err
[2025-10-09 14:08:54] -rw-r--r-- 1 boincer umatlas     22335 Oct  9 14:08 stderr.txt
[2025-10-09 14:08:54] HITS file was successfully produced:
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas 191405296 Oct  9 14:07 shared/HITS.pool.root.1
[2025-10-09 14:08:54]  *** Contents of shared directory: ***
[2025-10-09 14:08:54] total 404208
[2025-10-09 14:08:54] -rw-r--r-- 2 boincer umatlas 220864947 Oct  9 12:56 ATLAS.root_0
[2025-10-09 14:08:54] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 12:56 start_atlas.sh
[2025-10-09 14:08:54] -rw-r--r-- 2 boincer umatlas    569678 Oct  9 12:56 input.tar.gz
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas 191405296 Oct  9 14:07 HITS.pool.root.1
[2025-10-09 14:08:54] -rw------- 1 boincer umatlas   1034240 Oct  9 14:08 result.tar.gz
14:08:56 (28523): run_atlas exited; CPU time 45531.775473
14:08:56 (28523): called boinc_finish(0)

</stderr_txt>
]]>

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