Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:31:30 (3975496): wrapper (7.7.26015): starting
12:31:30 (3975496): wrapper: running run_atlas (--nthreads 9)
[2025-10-09 12:31:30] Arguments: --nthreads 9
[2025-10-09 12:31:30] Threads: 9
[2025-10-09 12:31:30] Checking for CVMFS
[2025-10-09 12:31:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 12:31:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 12:31:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 12:31:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 12:31:30] 2.13.2.0 3269412 31650 355596 151513 1 917 25308052 40960001 34404 16776704 0 384936193 99.828 172334664 37054 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 12:31:30] CVMFS is ok
[2025-10-09 12:31:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 12:31:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 12:31:30] Further information can be found at the LHC@home message board.
[2025-10-09 12:31:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 12:31:30] Checking for apptainer binary...
[2025-10-09 12:31:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 12:31:30] Running /usr/bin/apptainer --version
[2025-10-09 12:31:31] apptainer version 1.4.3-1.el9
[2025-10-09 12:31:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 12:31:31] c8-16-2.aglt2.org
[2025-10-09 12:31:31] apptainer works
[2025-10-09 12:31:31] Set ATHENA_PROC_NUMBER=9
[2025-10-09 12:31:31] Set ATHENA_CORE_NUMBER=9
[2025-10-09 12:31:31] Starting ATLAS job with PandaID=6835800349
[2025-10-09 12:31:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 13:44:08]  *** The last 200 lines of the pilot log: ***
[2025-10-09 13:44:08] 2025-10-09 17:42:53,347 | INFO     | executing command: lscpu
[2025-10-09 13:44:08] 2025-10-09 17:42:53,566 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 13:44:08] 2025-10-09 17:42:53,880 | INFO     | PID=3983186 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-09 13:44:08] 2025-10-09 17:42:53,880 | INFO     | .. there are 53 such processes running
[2025-10-09 13:44:08] 2025-10-09 17:42:54,881 | INFO     | time since job start (4259s) is within the limit (172800.0s)
[2025-10-09 13:44:08] 2025-10-09 17:42:56,887 | INFO     | time since job start (4261s) is within the limit (172800.0s)
[2025-10-09 13:44:08] 2025-10-09 17:42:57,642 | WARNING  | process 4023425 can no longer be monitored (due to stat problems) - aborting
[2025-10-09 13:44:08] 2025-10-09 17:42:57,642 | INFO     | using path: /tmp/boinchome/slots/12/PanDA_Pilot-6835800349/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 13:44:08] 2025-10-09 17:42:58,769 | INFO     | number of running child processes to parent process 4023425: 1
[2025-10-09 13:44:08] 2025-10-09 17:42:58,769 | INFO     | maximum number of monitored processes: 6
[2025-10-09 13:44:08] 2025-10-09 17:42:58,895 | INFO     | time since job start (4263s) is within the limit (172800.0s)
[2025-10-09 13:44:08] 2025-10-09 17:43:00,902 | INFO     | time since job start (4265s) is within the limit (172800.0s)
[2025-10-09 13:44:08] 2025-10-09 17:43:01,272 | INFO     | monitor loop #287: job 0:6835800349 is in state 'finished'
[2025-10-09 13:44:08] 2025-10-09 17:43:01,272 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:44:08] 2025-10-09 17:43:02,909 | INFO     | time since job start (4267s) is within the limit (172800.0s)
[2025-10-09 13:44:08] 2025-10-09 17:43:03,784 | INFO     | monitor loop #288: job 0:6835800349 is in state 'finished'
[2025-10-09 13:44:08] 2025-10-09 17:43:03,784 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:44:08] 2025-10-09 17:43:04,916 | INFO     | time since job start (4269s) is within the limit (172800.0s)
[2025-10-09 13:44:08] 2025-10-09 17:43:06,289 | INFO     | monitor loop #289: job 0:6835800349 is in state 'finished'
[2025-10-09 13:44:08] 2025-10-09 17:43:06,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:44:08] 2025-10-09 17:43:06,926 | INFO     | time since job start (4271s) is within the limit (172800.0s)
[2025-10-09 13:44:08] 2025-10-09 17:43:08,794 | INFO     | monitor loop #290: job 0:6835800349 is in state 'finished'
[2025-10-09 13:44:08] 2025-10-09 17:43:08,794 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:44:08] 2025-10-09 17:43:08,935 | INFO     | time since job start (4273s) is within the limit (172800.0s)
[2025-10-09 13:44:08] 2025-10-09 17:43:10,943 | INFO     | time since job start (4275s) is within the limit (172800.0s)
[2025-10-09 13:44:08] 2025-10-09 17:43:11,299 | INFO     | monitor loop #291: job 0:6835800349 is in state 'finished'
[2025-10-09 13:44:08] 2025-10-09 17:43:11,299 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:44:08] 2025-10-09 17:43:12,949 | INFO     | time since job start (4277s) is within the limit (172800.0s)
[2025-10-09 13:44:08] 2025-10-09 17:43:13,804 | INFO     | monitor loop #292: job 0:6835800349 is in state 'finished'
[2025-10-09 13:44:08] 2025-10-09 17:43:13,804 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:44:08] 2025-10-09 17:43:14,956 | INFO     | time since job start (4279s) is within the limit (172800.0s)
[2025-10-09 13:44:08] 2025-10-09 17:43:16,349 | INFO     | monitor loop #293: job 0:6835800349 is in state 'finished'
[2025-10-09 13:44:08] 2025-10-09 17:43:16,349 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:44:08] 2025-10-09 17:43:17,399 | INFO     | PID=3983186 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 13:44:08] 2025-10-09 17:43:17,399 | INFO     | .. there are 53 such processes running
[2025-10-09 13:44:08] 2025-10-09 17:43:18,401 | INFO     | time since job start (4283s) is within the limit (172800.0s)
[2025-10-09 13:44:08] 2025-10-09 17:43:18,720 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-09 13:44:08] 2025-10-09 17:43:18,727 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.6931249999957
[2025-10-09 13:44:08] 2025-10-09 17:43:18,754 | INFO     | using path: /tmp/boinchome/slots/12/PanDA_Pilot-6835800349/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 13:44:08] 2025-10-09 17:43:18,755 | INFO     | extracted standard info from prmon json
[2025-10-09 13:44:08] 2025-10-09 17:43:18,755 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 13:44:08] 2025-10-09 17:43:18,755 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 13:44:08] 2025-10-09 17:43:18,755 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 13:44:08] 2025-10-09 17:43:18,755 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 13:44:08] 2025-10-09 17:43:18,756 | INFO     | fitting pss+swap vs Time
[2025-10-09 13:44:08] 2025-10-09 17:43:18,756 | INFO     | sum of square deviations: 70364110.0
[2025-10-09 13:44:08] 2025-10-09 17:43:18,756 | INFO     | sum of deviations: 2179065607.0
[2025-10-09 13:44:08] 2025-10-09 17:43:18,756 | INFO     | mean x: 1760029798.0
[2025-10-09 13:44:08] 2025-10-09 17:43:18,757 | INFO     | mean y: 2171279.2622950817
[2025-10-09 13:44:08] 2025-10-09 17:43:18,757 | INFO     | -- intersect: -54503178111.456314
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | intersect: -54503178111.456314
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | chi2: 0.12184936081595886
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | -- intersect: -54503178111.456314
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | current memory leak: 30.97 B/s (using 61 data points, chi2=0.12)
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | could have reported an average CPU frequency of 3798 MHz (6 samples)
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | ..............................
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | . Timing measurements:
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | . get job = 0 s
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | . initial setup = 2 s
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | . payload setup = 45 s
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | . stage-in = 0 s
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | . payload execution = 4132 s
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | . stage-out = 1 s
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | . log creation = 0 s
[2025-10-09 13:44:08] 2025-10-09 17:43:18,761 | INFO     | ..............................
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | 
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | job summary report
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | --------------------------------------------------
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | PanDA job id: 6835800349
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | task id: 46676269
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | errors: (none)
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | pilot state: finished 
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | transexitcode: 0
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | exeerrorcode: 0
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | exeerrordiag: 
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | exitcode: 0
[2025-10-09 13:44:08] 2025-10-09 17:43:18,848 | INFO     | exitmsg: OK
[2025-10-09 13:44:08] 2025-10-09 17:43:18,849 | INFO     | cpuconsumptiontime: 22322 s
[2025-10-09 13:44:08] 2025-10-09 17:43:18,849 | INFO     | nevents: 400
[2025-10-09 13:44:08] 2025-10-09 17:43:18,849 | INFO     | neventsw: 0
[2025-10-09 13:44:08] 2025-10-09 17:43:18,849 | INFO     | pid: 4023425
[2025-10-09 13:44:08] 2025-10-09 17:43:18,849 | INFO     | pgrp: 4023425
[2025-10-09 13:44:08] 2025-10-09 17:43:18,849 | INFO     | corecount: 9
[2025-10-09 13:44:08] 2025-10-09 17:43:18,849 | INFO     | event service: False
[2025-10-09 13:44:08] 2025-10-09 17:43:18,849 | INFO     | sizes: {0: 2348016, 1: 2348873, 12: 2348873, 22: 2348901, 33: 2348929, 36: 2349247, 44: 2349403, 4181: 2375351, 4184: 2384407, 4210: 2384545}
[2025-10-09 13:44:08] 2025-10-09 17:43:18,849 | INFO     | --------------------------------------------------
[2025-10-09 13:44:08] 2025-10-09 17:43:18,849 | INFO     | 
[2025-10-09 13:44:08] 2025-10-09 17:43:18,849 | INFO     | executing command: ls -lF /tmp/boinchome/slots/12
[2025-10-09 13:44:08] 2025-10-09 17:43:18,902 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,902 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,902 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,902 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,902 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,902 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,902 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,902 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,902 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | job 6835800349 has completed (purged errors)
[2025-10-09 13:44:08] 2025-10-09 17:43:18,903 | INFO     | overall cleanup function is called
[2025-10-09 13:44:08] 2025-10-09 17:43:19,911 | INFO     | --- collectZombieJob: --- 10, [4023425]
[2025-10-09 13:44:08] 2025-10-09 17:43:19,911 | INFO     | zombie collector waiting for pid 4023425
[2025-10-09 13:44:08] 2025-10-09 17:43:19,911 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 13:44:08] 2025-10-09 17:43:19,911 | INFO     | collected zombie processes
[2025-10-09 13:44:08] 2025-10-09 17:43:19,911 | INFO     | will attempt to kill all subprocesses of pid=4023425
[2025-10-09 13:44:08] 2025-10-09 17:43:21,143 | INFO     | process IDs to be killed: [4023425] (in reverse order)
[2025-10-09 13:44:08] 2025-10-09 17:43:21,566 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 13:44:08] 2025-10-09 17:43:21,566 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 13:44:08] 2025-10-09 17:43:21,708 | INFO     | did not find any defunct processes belonging to 4023425
[2025-10-09 13:44:08] 2025-10-09 17:43:21,781 | INFO     | did not find any defunct processes belonging to 4023425
[2025-10-09 13:44:08] 2025-10-09 17:43:21,781 | INFO     | ready for new job
[2025-10-09 13:44:08] 2025-10-09 17:43:21,781 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 13:44:08] 2025-10-09 17:43:21,782 | INFO     | ***************************************
[2025-10-09 13:44:08] 2025-10-09 17:43:21,782 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-09 13:44:08] 2025-10-09 17:43:21,782 | INFO     | ***************************************
[2025-10-09 13:44:08] 2025-10-09 17:43:21,782 | INFO     | 
[2025-10-09 13:44:08] 2025-10-09 17:43:21,802 | INFO     | architecture information:
[2025-10-09 13:44:08] 2025-10-09 17:43:21,813 | INFO     | executing command: cat /etc/os-release
[2025-10-09 13:44:08] 2025-10-09 17:43:21,851 | INFO     | cat /etc/os-release:
[2025-10-09 13:44:08] NAME="CentOS Linux"
[2025-10-09 13:44:08] VERSION="7 (Core)"
[2025-10-09 13:44:08] ID="centos"
[2025-10-09 13:44:08] ID_LIKE="rhel fedora"
[2025-10-09 13:44:08] VERSION_ID="7"
[2025-10-09 13:44:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 13:44:08] ANSI_COLOR="0;31"
[2025-10-09 13:44:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 13:44:08] HOME_URL="https://www.centos.org/"
[2025-10-09 13:44:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 13:44:08] 
[2025-10-09 13:44:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 13:44:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 13:44:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 13:44:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 13:44:08] 
[2025-10-09 13:44:08] 2025-10-09 17:43:21,851 | INFO     | ***************************************
[2025-10-09 13:44:08] 2025-10-09 17:43:22,355 | INFO     | executing command: df -mP /tmp/boinchome/slots/12
[2025-10-09 13:44:08] 2025-10-09 17:43:22,388 | INFO     | sufficient remaining disk space (166505480192 B)
[2025-10-09 13:44:08] 2025-10-09 17:43:22,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 13:44:08] 2025-10-09 17:43:22,388 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 13:44:08] 2025-10-09 17:43:22,388 | INFO     | update_server=False
[2025-10-09 13:44:08] 2025-10-09 17:43:22,388 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 13:44:08] 2025-10-09 17:43:22,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 13:44:08] 2025-10-09 17:43:22,389 | INFO     | aborting loop
[2025-10-09 13:44:08] 2025-10-09 17:43:22,393 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 13:44:08] 2025-10-09 17:43:22,696 | INFO     | all data control threads have been joined
[2025-10-09 13:44:08] 2025-10-09 17:43:23,394 | INFO     | [job] retrieve thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:23,395 | INFO     | [job] job monitor thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:23,404 | INFO     | all job control threads have been joined
[2025-10-09 13:44:08] 2025-10-09 17:43:23,505 | INFO     | all payload control threads have been joined
[2025-10-09 13:44:08] 2025-10-09 17:43:23,532 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 13:44:08] 2025-10-09 17:43:23,594 | INFO     | [job] validate thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:23,702 | INFO     | [data] control thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:23,861 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 13:44:08] 2025-10-09 17:43:23,890 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:23,890 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:23,891 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:24,397 | INFO     | [data] copytool_in thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:24,410 | INFO     | [job] control thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:24,488 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:24,511 | INFO     | [payload] control thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:24,569 | INFO     | [payload] failed_post thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:24,594 | INFO     | [payload] validate_post thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:24,867 | INFO     | [job] queue monitor thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:25,539 | INFO     | [data] copytool_out thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:26,407 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 13:44:08] 2025-10-09 17:43:52,879 | INFO     | PID=3983186 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 13:44:08] 2025-10-09 17:43:52,879 | INFO     | .. there are 53 such processes running
[2025-10-09 13:44:08] 2025-10-09 17:43:52,879 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 13:44:08] 2025-10-09 17:43:52,879 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 13:44:08] 2025-10-09 17:43:52,879 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 13:44:08] 2025-10-09 17:44:02,054 | INFO     | [monitor] cgroup control has ended
[2025-10-09 13:44:08] 2025-10-09 17:44:02,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140012941477696)>', '<ExcThread(monitor, started 140012276397824)>']
[2025-10-09 13:44:08] 2025-10-09 17:44:02,942 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 13:44:08] 2025-10-09 17:44:02,942 | INFO     | [monitor] control thread has ended
[2025-10-09 13:44:08] 2025-10-09 17:44:07,272 | INFO     | all workflow threads have been joined
[2025-10-09 13:44:08] 2025-10-09 17:44:07,272 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 13:44:08] 2025-10-09 17:44:07,272 | INFO     | traces error code: 0
[2025-10-09 13:44:08] 2025-10-09 17:44:07,272 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 13:44:08] 2025-10-09 17:44:07,485 [wrapper] ==== pilot stdout END ====
[2025-10-09 13:44:08] 2025-10-09 17:44:07,500 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 13:44:08] 2025-10-09 17:44:07,507 [wrapper] pilotpid: 3983186
[2025-10-09 13:44:08] 2025-10-09 17:44:07,524 [wrapper] Pilot exit status: 0
[2025-10-09 13:44:08] 2025-10-09 17:44:07,595 [wrapper] pandaids: 6835800349
[2025-10-09 13:44:08] 2025-10-09 17:44:07,858 [wrapper] cleanup supervisor_pilot  456660 3983187
[2025-10-09 13:44:08] 2025-10-09 17:44:07,872 [wrapper] Test setup, not cleaning
[2025-10-09 13:44:08] 2025-10-09 17:44:07,887 [wrapper] apfmon messages muted
[2025-10-09 13:44:08] 2025-10-09 17:44:07,891 [wrapper] ==== wrapper stdout END ====
[2025-10-09 13:44:08] 2025-10-09 17:44:07,896 [wrapper] ==== wrapper stderr END ====
[2025-10-09 13:44:08]  *** Error codes and diagnostics ***
[2025-10-09 13:44:08]     "exeErrorCode": 0,
[2025-10-09 13:44:08]     "exeErrorDiag": "",
[2025-10-09 13:44:08]     "pilotErrorCode": 0,
[2025-10-09 13:44:08]     "pilotErrorDiag": "",
[2025-10-09 13:44:08]  *** Listing of results directory ***
[2025-10-09 13:44:08] total 410424
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas    552446 Oct  8 02:43 pilot3.tar.gz
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 02:57 queuedata.json
[2025-10-09 13:44:08] -rwx------. 1 boincer umatlas     36292 Oct  8 02:57 runpilot2-wrapper.sh
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas       100 Oct  9 12:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 13:44:08] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 12:31 run_atlas
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas       105 Oct  9 12:31 job.xml
[2025-10-09 13:44:08] -rw-r--r--. 2 boincer umatlas 219862656 Oct  9 12:31 EVNT.46676267._000040.pool.root.1
[2025-10-09 13:44:08] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 12:31 start_atlas.sh
[2025-10-09 13:44:08] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 12:31 shared
[2025-10-09 13:44:08] -rw-r--r--. 2 boincer umatlas    565601 Oct  9 12:31 input.tar.gz
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas         0 Oct  9 12:31 boinc_lockfile
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas      2544 Oct  9 12:31 pandaJob.out
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas    975462 Oct  9 12:31 agis_schedconf.cvmfs.json
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas   1560401 Oct  9 12:31 agis_ddmendpoints.agis.ALL.json
[2025-10-09 13:44:08] drwx------. 4 boincer umatlas      4096 Oct  9 12:31 pilot3
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas      7162 Oct  9 13:38 init_data.xml
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas 194714796 Oct  9 13:42 HITS.46676269._000979.pool.root.1
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas       529 Oct  9 13:42 boinc_task_state.xml
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas      1034 Oct  9 13:42 memory_monitor_summary.json
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas    320296 Oct  9 13:42 log.46676269._000979.job.log.tgz.1
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas      7773 Oct  9 13:43 heartbeat.json
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas        95 Oct  9 13:43 pilot_heartbeat.json
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas      4826 Oct  9 13:44 pilotlog.txt
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas        27 Oct  9 13:44 wrapper_checkpoint.txt
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 13:44 boinc_mmap_file
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas    584540 Oct  9 13:44 log.46676269._000979.job.log.1
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas       357 Oct  9 13:44 output.list
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas       620 Oct  9 13:44 runtime_log
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas    921600 Oct  9 13:44 result.tar.gz
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas      8712 Oct  9 13:44 runtime_log.err
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas       651 Oct  9 13:44 HKgNDmcIdQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkTXNDmR4vQsn.diag
[2025-10-09 13:44:08] -rw-r--r--. 1 boincer umatlas     22474 Oct  9 13:44 stderr.txt
[2025-10-09 13:44:08] HITS file was successfully produced:
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas 194714796 Oct  9 13:42 shared/HITS.pool.root.1
[2025-10-09 13:44:08]  *** Contents of shared directory: ***
[2025-10-09 13:44:08] total 406344
[2025-10-09 13:44:08] -rw-r--r--. 2 boincer umatlas 219862656 Oct  9 12:31 ATLAS.root_0
[2025-10-09 13:44:08] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 12:31 start_atlas.sh
[2025-10-09 13:44:08] -rw-r--r--. 2 boincer umatlas    565601 Oct  9 12:31 input.tar.gz
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas 194714796 Oct  9 13:42 HITS.pool.root.1
[2025-10-09 13:44:08] -rw-------. 1 boincer umatlas    921600 Oct  9 13:44 result.tar.gz
13:44:09 (3975496): run_atlas exited; CPU time 22493.050108
13:44:09 (3975496): called boinc_finish(0)

</stderr_txt>
]]>

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