Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:32:00 (422617): wrapper (7.7.26015): starting
12:32:00 (422617): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 12:32:00] Arguments: --nthreads 8
[2025-10-09 12:32:00] Threads: 8
[2025-10-09 12:32:00] Checking for CVMFS
[2025-10-09 12:32:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 12:32:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 12:32:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 12:32:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 12:32:02] 2.13.2.0 112940 134035 425056 151513 0 1123 28340334 40960000 39923 16776704 0 363320734 99.816 178018194 31703 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 12:32:02] CVMFS is ok
[2025-10-09 12:32:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 12:32:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 12:32:02] Further information can be found at the LHC@home message board.
[2025-10-09 12:32:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 12:32:02] Checking for apptainer binary...
[2025-10-09 12:32:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 12:32:02] Running /usr/bin/apptainer --version
[2025-10-09 12:32:03] apptainer version 1.4.3-1.el9
[2025-10-09 12:32:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 12:32:03] c8-7-3.aglt2.org
[2025-10-09 12:32:03] apptainer works
[2025-10-09 12:32:03] Set ATHENA_PROC_NUMBER=8
[2025-10-09 12:32:03] Set ATHENA_CORE_NUMBER=8
[2025-10-09 12:32:03] Starting ATLAS job with PandaID=6837333845
[2025-10-09 12:32:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 14:13:54]  *** The last 200 lines of the pilot log: ***
[2025-10-09 14:13:54] 2025-10-09 18:12:54,190 | INFO     | monitor loop #395: job 0:6837333845 is in state 'finished'
[2025-10-09 14:13:54] 2025-10-09 18:12:54,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:13:54] 2025-10-09 18:12:54,736 | INFO     | time since job start (5958s) is within the limit (172800.0s)
[2025-10-09 14:13:54] 2025-10-09 18:12:56,695 | INFO     | monitor loop #396: job 0:6837333845 is in state 'finished'
[2025-10-09 14:13:54] 2025-10-09 18:12:56,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:13:54] 2025-10-09 18:12:56,750 | INFO     | time since job start (5960s) is within the limit (172800.0s)
[2025-10-09 14:13:54] 2025-10-09 18:12:58,757 | INFO     | time since job start (5962s) is within the limit (172800.0s)
[2025-10-09 14:13:54] 2025-10-09 18:12:59,203 | INFO     | monitor loop #397: job 0:6837333845 is in state 'finished'
[2025-10-09 14:13:54] 2025-10-09 18:12:59,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:13:54] 2025-10-09 18:13:01,437 | INFO     | PID=435922 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-09 14:13:54] 2025-10-09 18:13:01,437 | INFO     | .. there are 40 such processes running
[2025-10-09 14:13:54] 2025-10-09 18:13:01,732 | INFO     | monitor loop #398: job 0:6837333845 is in state 'finished'
[2025-10-09 14:13:54] 2025-10-09 18:13:01,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:13:54] 2025-10-09 18:13:02,438 | INFO     | time since job start (5966s) is within the limit (172800.0s)
[2025-10-09 14:13:54] 2025-10-09 18:13:04,250 | INFO     | monitor loop #399: job 0:6837333845 is in state 'finished'
[2025-10-09 14:13:54] 2025-10-09 18:13:04,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:13:54] 2025-10-09 18:13:04,445 | INFO     | time since job start (5968s) is within the limit (172800.0s)
[2025-10-09 14:13:54] 2025-10-09 18:13:06,457 | INFO     | time since job start (5970s) is within the limit (172800.0s)
[2025-10-09 14:13:54] 2025-10-09 18:13:06,755 | INFO     | monitor loop #400: job 0:6837333845 is in state 'finished'
[2025-10-09 14:13:54] 2025-10-09 18:13:06,755 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:13:54] 2025-10-09 18:13:08,476 | INFO     | time since job start (5972s) is within the limit (172800.0s)
[2025-10-09 14:13:54] 2025-10-09 18:13:09,265 | INFO     | monitor loop #401: job 0:6837333845 is in state 'finished'
[2025-10-09 14:13:54] 2025-10-09 18:13:09,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:13:54] 2025-10-09 18:13:10,483 | INFO     | time since job start (5974s) is within the limit (172800.0s)
[2025-10-09 14:13:54] 2025-10-09 18:13:11,770 | INFO     | monitor loop #402: job 0:6837333845 is in state 'finished'
[2025-10-09 14:13:54] 2025-10-09 18:13:11,770 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:13:54] 2025-10-09 18:13:12,490 | INFO     | time since job start (5976s) is within the limit (172800.0s)
[2025-10-09 14:13:54] 2025-10-09 18:13:14,275 | INFO     | monitor loop #403: job 0:6837333845 is in state 'finished'
[2025-10-09 14:13:54] 2025-10-09 18:13:14,275 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:13:54] 2025-10-09 18:13:14,500 | INFO     | time since job start (5978s) is within the limit (172800.0s)
[2025-10-09 14:13:54] 2025-10-09 18:13:16,507 | INFO     | time since job start (5980s) is within the limit (172800.0s)
[2025-10-09 14:13:54] 2025-10-09 18:13:16,791 | INFO     | monitor loop #404: job 0:6837333845 is in state 'finished'
[2025-10-09 14:13:54] 2025-10-09 18:13:16,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 14:13:54] 2025-10-09 18:13:18,499 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-09 14:13:54] 2025-10-09 18:13:18,504 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.222039062502
[2025-10-09 14:13:54] 2025-10-09 18:13:18,516 | INFO     | time since job start (5982s) is within the limit (172800.0s)
[2025-10-09 14:13:54] 2025-10-09 18:13:18,523 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6837333845/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 14:13:54] 2025-10-09 18:13:18,523 | INFO     | extracted standard info from prmon json
[2025-10-09 14:13:54] 2025-10-09 18:13:18,523 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 14:13:54] 2025-10-09 18:13:18,523 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 14:13:54] 2025-10-09 18:13:18,524 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 14:13:54] 2025-10-09 18:13:18,524 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 14:13:54] 2025-10-09 18:13:18,525 | INFO     | fitting pss+swap vs Time
[2025-10-09 14:13:54] 2025-10-09 18:13:18,525 | INFO     | sum of square deviations: 211316897.98863629
[2025-10-09 14:13:54] 2025-10-09 18:13:18,525 | INFO     | sum of deviations: 8603114496.84091
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | mean x: 1760030753.7613637
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | mean y: 2449646.659090909
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | -- intersect: -71651763701.60083
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | intersect: -71651763701.60083
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | chi2: 0.6344061988595499
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | -- intersect: -71651763701.60083
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | current memory leak: 40.71 B/s (using 88 data points, chi2=0.63)
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | could have reported an average CPU frequency of 3797 MHz (7 samples)
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | ..............................
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | . Timing measurements:
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | . get job = 0 s
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | . initial setup = 9 s
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | . payload setup = 65 s
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | . stage-in = 0 s
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | . payload execution = 5791 s
[2025-10-09 14:13:54] 2025-10-09 18:13:18,526 | INFO     | . stage-out = 2 s
[2025-10-09 14:13:54] 2025-10-09 18:13:18,527 | INFO     | . log creation = 0 s
[2025-10-09 14:13:54] 2025-10-09 18:13:18,527 | INFO     | ..............................
[2025-10-09 14:13:54] 2025-10-09 18:13:18,598 | INFO     | 
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | job summary report
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | --------------------------------------------------
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | PanDA job id: 6837333845
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | task id: 46676269
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | errors: (none)
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | pilot state: finished 
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | transexitcode: 0
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | exeerrorcode: 0
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | exeerrordiag: 
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | exitcode: 0
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | exitmsg: OK
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | cpuconsumptiontime: 22762 s
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | nevents: 400
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | neventsw: 0
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | pid: 450395
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | pgrp: 450395
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | corecount: 8
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | event service: False
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | sizes: {0: 2348628, 1: 2348883, 12: 2348883, 23: 2348911, 34: 2348939, 39: 2349229, 45: 2349385, 5862: 2376084, 5865: 2385082, 5867: 2385138, 5903: 2385332}
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | --------------------------------------------------
[2025-10-09 14:13:54] 2025-10-09 18:13:18,602 | INFO     | 
[2025-10-09 14:13:54] 2025-10-09 18:13:18,607 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,725 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,726 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,726 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,726 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,726 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 14:13:54] 2025-10-09 18:13:18,726 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,726 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 14:13:54] 2025-10-09 18:13:18,726 | INFO     | job 6837333845 has completed (purged errors)
[2025-10-09 14:13:54] 2025-10-09 18:13:18,726 | INFO     | overall cleanup function is called
[2025-10-09 14:13:54] 2025-10-09 18:13:19,733 | INFO     | --- collectZombieJob: --- 10, [450395]
[2025-10-09 14:13:54] 2025-10-09 18:13:19,733 | INFO     | zombie collector waiting for pid 450395
[2025-10-09 14:13:54] 2025-10-09 18:13:19,733 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 14:13:54] 2025-10-09 18:13:19,733 | INFO     | collected zombie processes
[2025-10-09 14:13:54] 2025-10-09 18:13:19,733 | INFO     | will attempt to kill all subprocesses of pid=450395
[2025-10-09 14:13:54] 2025-10-09 18:13:20,554 | INFO     | process IDs to be killed: [450395] (in reverse order)
[2025-10-09 14:13:54] 2025-10-09 18:13:20,836 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 14:13:54] 2025-10-09 18:13:20,836 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 14:13:54] 2025-10-09 18:13:20,923 | INFO     | did not find any defunct processes belonging to 450395
[2025-10-09 14:13:54] 2025-10-09 18:13:20,950 | INFO     | did not find any defunct processes belonging to 450395
[2025-10-09 14:13:54] 2025-10-09 18:13:20,950 | INFO     | ready for new job
[2025-10-09 14:13:54] 2025-10-09 18:13:20,950 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 14:13:54] 2025-10-09 18:13:20,951 | INFO     | ***************************************
[2025-10-09 14:13:54] 2025-10-09 18:13:20,951 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 14:13:54] 2025-10-09 18:13:20,952 | INFO     | ***************************************
[2025-10-09 14:13:54] 2025-10-09 18:13:20,952 | INFO     | 
[2025-10-09 14:13:54] 2025-10-09 18:13:20,973 | INFO     | architecture information:
[2025-10-09 14:13:54] 2025-10-09 18:13:20,978 | INFO     | executing command: cat /etc/os-release
[2025-10-09 14:13:54] 2025-10-09 18:13:21,040 | INFO     | cat /etc/os-release:
[2025-10-09 14:13:54] NAME="CentOS Linux"
[2025-10-09 14:13:54] VERSION="7 (Core)"
[2025-10-09 14:13:54] ID="centos"
[2025-10-09 14:13:54] ID_LIKE="rhel fedora"
[2025-10-09 14:13:54] VERSION_ID="7"
[2025-10-09 14:13:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 14:13:54] ANSI_COLOR="0;31"
[2025-10-09 14:13:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 14:13:54] HOME_URL="https://www.centos.org/"
[2025-10-09 14:13:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 14:13:54] 
[2025-10-09 14:13:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 14:13:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 14:13:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 14:13:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 14:13:54] 
[2025-10-09 14:13:54] 2025-10-09 18:13:21,040 | INFO     | ***************************************
[2025-10-09 14:13:54] 2025-10-09 18:13:21,548 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-09 14:13:54] 2025-10-09 18:13:21,642 | INFO     | sufficient remaining disk space (169549496320 B)
[2025-10-09 14:13:54] 2025-10-09 18:13:21,642 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 14:13:54] 2025-10-09 18:13:21,642 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 14:13:54] 2025-10-09 18:13:21,642 | INFO     | update_server=False
[2025-10-09 14:13:54] 2025-10-09 18:13:21,642 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 14:13:54] 2025-10-09 18:13:21,642 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 14:13:54] 2025-10-09 18:13:21,812 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-09 14:13:54] 2025-10-09 18:13:21,813 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-09 14:13:54] 2025-10-09 18:13:21,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 14:13:54] 2025-10-09 18:13:21,813 | INFO     | will abort loop
[2025-10-09 14:13:54] 2025-10-09 18:13:21,955 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 14:13:54] 2025-10-09 18:13:22,388 | INFO     | all job control threads have been joined
[2025-10-09 14:13:54] 2025-10-09 18:13:22,633 | INFO     | all data control threads have been joined
[2025-10-09 14:13:54] 2025-10-09 18:13:22,648 | INFO     | [job] retrieve thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:22,673 | INFO     | [payload] failed_post thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:22,718 | INFO     | [payload] validate_post thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:22,820 | INFO     | [job] job monitor thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:22,945 | INFO     | all payload control threads have been joined
[2025-10-09 14:13:54] 2025-10-09 18:13:23,040 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:23,220 | INFO     | [data] copytool_in thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:23,236 | INFO     | [job] validate thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:23,236 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:23,394 | INFO     | [job] control thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:23,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 14:13:54] 2025-10-09 18:13:23,639 | INFO     | [data] control thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:23,951 | INFO     | [payload] control thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:23,961 | INFO     | [data] copytool_out thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:24,038 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:24,053 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:24,623 | INFO     | [job] queue monitor thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:25,652 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 14:13:54] 2025-10-09 18:13:45,827 | INFO     | [monitor] cgroup control has ended
[2025-10-09 14:13:54] 2025-10-09 18:13:46,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140140628571968)>', '<ExcThread(monitor, started 140139539982080)>']
[2025-10-09 14:13:54] 2025-10-09 18:13:51,528 | INFO     | all workflow threads have been joined
[2025-10-09 14:13:54] 2025-10-09 18:13:51,528 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 14:13:54] 2025-10-09 18:13:51,528 | INFO     | traces error code: 0
[2025-10-09 14:13:54] 2025-10-09 18:13:51,528 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 14:13:54] 2025-10-09 18:13:53,187 | INFO     | PID=435922 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-09 14:13:54] 2025-10-09 18:13:53,187 | INFO     | .. there are 40 such processes running
[2025-10-09 14:13:54] 2025-10-09 18:13:53,188 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 14:13:54] 2025-10-09 18:13:53,188 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 14:13:54] 2025-10-09 18:13:53,188 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 14:13:54] 2025-10-09 18:13:53,188 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 14:13:54] 2025-10-09 18:13:53,188 | INFO     | [monitor] control thread has ended
[2025-10-09 14:13:54] 2025-10-09 18:13:53,420 [wrapper] ==== pilot stdout END ====
[2025-10-09 14:13:54] 2025-10-09 18:13:53,456 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 14:13:54] 2025-10-09 18:13:53,471 [wrapper] pilotpid: 435922
[2025-10-09 14:13:54] 2025-10-09 18:13:53,537 [wrapper] Pilot exit status: 0
[2025-10-09 14:13:54] 2025-10-09 18:13:53,603 [wrapper] pandaids: 6837333845
[2025-10-09 14:13:54] 2025-10-09 18:13:53,713 [wrapper] cleanup supervisor_pilot 1004302 435923
[2025-10-09 14:13:54] 2025-10-09 18:13:53,730 [wrapper] Test setup, not cleaning
[2025-10-09 14:13:54] 2025-10-09 18:13:53,747 [wrapper] apfmon messages muted
[2025-10-09 14:13:54] 2025-10-09 18:13:53,775 [wrapper] ==== wrapper stdout END ====
[2025-10-09 14:13:54] 2025-10-09 18:13:53,824 [wrapper] ==== wrapper stderr END ====
[2025-10-09 14:13:54]  *** Error codes and diagnostics ***
[2025-10-09 14:13:54]     "exeErrorCode": 0,
[2025-10-09 14:13:54]     "exeErrorDiag": "",
[2025-10-09 14:13:54]     "pilotErrorCode": 0,
[2025-10-09 14:13:54]     "pilotErrorDiag": "",
[2025-10-09 14:13:54]  *** Listing of results directory ***
[2025-10-09 14:13:54] total 412468
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 07:26 pilot3.tar.gz
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 07:35 queuedata.json
[2025-10-09 14:13:54] -rwx------. 1 boincer umatlas     36292 Oct  9 07:36 runpilot2-wrapper.sh
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas       100 Oct  9 12:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 14:13:54] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 12:31 run_atlas
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas       105 Oct  9 12:31 job.xml
[2025-10-09 14:13:54] -rw-r--r--. 2 boincer umatlas 223630694 Oct  9 12:32 EVNT.46676267._000659.pool.root.1
[2025-10-09 14:13:54] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 12:32 start_atlas.sh
[2025-10-09 14:13:54] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 12:32 shared
[2025-10-09 14:13:54] -rw-r--r--. 2 boincer umatlas    569682 Oct  9 12:32 input.tar.gz
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas         0 Oct  9 12:32 boinc_lockfile
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas      2549 Oct  9 12:32 pandaJob.out
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas    975462 Oct  9 12:33 agis_schedconf.cvmfs.json
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas   1560401 Oct  9 12:33 agis_ddmendpoints.agis.ALL.json
[2025-10-09 14:13:54] drwx------. 5 boincer umatlas      4096 Oct  9 12:33 pilot3
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas      7161 Oct  9 14:10 init_data.xml
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas 192566436 Oct  9 14:11 HITS.46676269._016025.pool.root.1
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas       529 Oct  9 14:11 boinc_task_state.xml
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas      1049 Oct  9 14:12 memory_monitor_summary.json
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas    352407 Oct  9 14:12 log.46676269._016025.job.log.tgz.1
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas      7801 Oct  9 14:13 heartbeat.json
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 14:13 boinc_mmap_file
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas        27 Oct  9 14:13 wrapper_checkpoint.txt
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas       822 Oct  9 14:13 pilotlog.txt
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas        95 Oct  9 14:13 pilot_heartbeat.json
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas    782272 Oct  9 14:13 log.46676269._016025.job.log.1
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas       357 Oct  9 14:13 output.list
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas       620 Oct  9 14:13 runtime_log
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas   1157120 Oct  9 14:13 result.tar.gz
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas      8693 Oct  9 14:13 runtime_log.err
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas       655 Oct  9 14:13 QdDMDmP73Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsaZNDmQ524Dn.diag
[2025-10-09 14:13:54] -rw-r--r--. 1 boincer umatlas     22337 Oct  9 14:13 stderr.txt
[2025-10-09 14:13:54] HITS file was successfully produced:
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas 192566436 Oct  9 14:11 shared/HITS.pool.root.1
[2025-10-09 14:13:54]  *** Contents of shared directory: ***
[2025-10-09 14:13:54] total 408160
[2025-10-09 14:13:54] -rw-r--r--. 2 boincer umatlas 223630694 Oct  9 12:32 ATLAS.root_0
[2025-10-09 14:13:54] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 12:32 start_atlas.sh
[2025-10-09 14:13:54] -rw-r--r--. 2 boincer umatlas    569682 Oct  9 12:32 input.tar.gz
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas 192566436 Oct  9 14:11 HITS.pool.root.1
[2025-10-09 14:13:54] -rw-------. 1 boincer umatlas   1157120 Oct  9 14:13 result.tar.gz
14:13:56 (422617): run_atlas exited; CPU time 22905.903484
14:13:56 (422617): called boinc_finish(0)

</stderr_txt>
]]>

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