Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:04:39 (204521): wrapper (7.7.26015): starting
17:04:39 (204521): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 17:04:39] Arguments: --nthreads 8
[2025-10-09 17:04:39] Threads: 8
[2025-10-09 17:04:39] Checking for CVMFS
[2025-10-09 17:04:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 17:04:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 17:04:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 17:04:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 17:04:42] 2.13.2.0 239285 125458 272216 151522 1 397 32863072 32935936 21418 16776704 0 81261706 99.657 77057132 30530 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 17:04:42] CVMFS is ok
[2025-10-09 17:04:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 17:04:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 17:04:42] Further information can be found at the LHC@home message board.
[2025-10-09 17:04:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 17:04:42] Checking for apptainer binary...
[2025-10-09 17:04:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 17:04:42] Running /usr/bin/apptainer --version
[2025-10-09 17:04:42] apptainer version 1.4.3-1.el9
[2025-10-09 17:04:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 17:04:42] c-6-6.aglt2.org
[2025-10-09 17:04:42] apptainer works
[2025-10-09 17:04:42] Set ATHENA_PROC_NUMBER=8
[2025-10-09 17:04:42] Set ATHENA_CORE_NUMBER=8
[2025-10-09 17:04:42] Starting ATLAS job with PandaID=6837338848
[2025-10-09 17:04:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:28:06 (255225): wrapper (7.7.26015): starting
17:28:06 (255225): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 17:28:06] Arguments: --nthreads 8
[2025-10-09 17:28:06] Threads: 8
[2025-10-09 17:28:06] This job has been restarted, cleaning up previous attempt
[2025-10-09 17:28:06] Checking for CVMFS
[2025-10-09 17:28:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 17:28:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 17:28:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 17:28:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 17:28:06] 2.13.2.0 239285 125482 256180 151524 2 21 32889289 32935937 20502 16776704 0 81310016 99.657 77059509 30530 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 17:28:06] CVMFS is ok
[2025-10-09 17:28:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 17:28:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 17:28:06] Further information can be found at the LHC@home message board.
[2025-10-09 17:28:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 17:28:06] Checking for apptainer binary...
[2025-10-09 17:28:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 17:28:06] Running /usr/bin/apptainer --version
[2025-10-09 17:28:06] apptainer version 1.4.3-1.el9
[2025-10-09 17:28:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 17:28:07] c-6-6.aglt2.org
[2025-10-09 17:28:07] apptainer works
[2025-10-09 17:28:07] Set ATHENA_PROC_NUMBER=8
[2025-10-09 17:28:07] Set ATHENA_CORE_NUMBER=8
[2025-10-09 17:28:07] Starting ATLAS job with PandaID=6837338848
[2025-10-09 17:28:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 05:18:16]  *** The last 200 lines of the pilot log: ***
[2025-10-10 05:18:16] 2025-10-10 09:16:58,304 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 05:18:16] 2025-10-10 09:16:58,347 | INFO     | fitting pss+swap vs Time
[2025-10-10 05:18:16] 2025-10-10 09:16:58,348 | INFO     | sum of square deviations: 104096968013.74677
[2025-10-10 05:18:16] 2025-10-10 09:16:58,401 | INFO     | sum of deviations: -325632365430.83167
[2025-10-10 05:18:16] 2025-10-10 09:16:58,434 | INFO     | mean x: 1760066524.1021583
[2025-10-10 05:18:16] 2025-10-10 09:16:58,434 | INFO     | mean y: 2079415.6877697841
[2025-10-10 05:18:16] 2025-10-10 09:16:58,434 | INFO     | -- intersect: 5507855774.931211
[2025-10-10 05:18:16] 2025-10-10 09:16:58,434 | INFO     | intersect: 5507855774.931211
[2025-10-10 05:18:16] 2025-10-10 09:16:58,435 | INFO     | chi2: 4.712217224285257
[2025-10-10 05:18:16] 2025-10-10 09:16:58,436 | INFO     | sum of square deviations: 101866615218.34781
[2025-10-10 05:18:16] 2025-10-10 09:16:58,483 | INFO     | sum of deviations: -221873604147.04346
[2025-10-10 05:18:16] 2025-10-10 09:16:58,483 | INFO     | mean x: 1760066371.6086957
[2025-10-10 05:18:16] 2025-10-10 09:16:58,484 | INFO     | mean y: 2086494.207246377
[2025-10-10 05:18:16] 2025-10-10 09:16:58,484 | INFO     | -- intersect: 3835651284.494824
[2025-10-10 05:18:16] 2025-10-10 09:16:58,484 | INFO     | intersect: 3835651284.494824
[2025-10-10 05:18:16] 2025-10-10 09:16:58,495 | INFO     | chi2: 3.107757331883524
[2025-10-10 05:18:16] 2025-10-10 09:16:58,495 | INFO     | current chi2=3.107757331883524 (change=34.04893739051037 %)
[2025-10-10 05:18:16] 2025-10-10 09:16:58,496 | INFO     | sum of square deviations: 99668187570.78854
[2025-10-10 05:18:16] 2025-10-10 09:16:58,531 | INFO     | sum of deviations: -199967692872.08026
[2025-10-10 05:18:16] 2025-10-10 09:16:58,531 | INFO     | mean x: 1760066219.109489
[2025-10-10 05:18:16] 2025-10-10 09:16:58,531 | INFO     | mean y: 2088012.6277372262
[2025-10-10 05:18:16] 2025-10-10 09:16:58,531 | INFO     | -- intersect: 3533369053.4055233
[2025-10-10 05:18:16] 2025-10-10 09:16:58,532 | INFO     | intersect: 3533369053.4055233
[2025-10-10 05:18:16] 2025-10-10 09:16:58,532 | INFO     | chi2: 3.067398603288722
[2025-10-10 05:18:16] 2025-10-10 09:16:58,533 | INFO     | current chi2=3.067398603288722 (change=1.2986447873760425 %)
[2025-10-10 05:18:16] 2025-10-10 09:16:58,533 | INFO     | right removable region: 684
[2025-10-10 05:18:16] 2025-10-10 09:16:58,534 | INFO     | sum of square deviations: 101866190230.1289
[2025-10-10 05:18:16] 2025-10-10 09:16:58,577 | INFO     | sum of deviations: -430017069349.07544
[2025-10-10 05:18:16] 2025-10-10 09:16:58,577 | INFO     | mean x: 1760066676.6101449
[2025-10-10 05:18:16] 2025-10-10 09:16:58,578 | INFO     | mean y: 2086536.5536231885
[2025-10-10 05:18:16] 2025-10-10 09:16:58,578 | INFO     | -- intersect: 7432017040.727967
[2025-10-10 05:18:16] 2025-10-10 09:16:58,578 | INFO     | intersect: 7432017040.727967
[2025-10-10 05:18:16] 2025-10-10 09:16:58,583 | INFO     | chi2: 3.1385812308305585
[2025-10-10 05:18:16] 2025-10-10 09:16:58,583 | INFO     | current chi2=3.1385812308305585 (change=33.39481009798706 %)
[2025-10-10 05:18:16] 2025-10-10 09:16:58,584 | INFO     | sum of square deviations: 99667506071.4218
[2025-10-10 05:18:16] 2025-10-10 09:16:58,668 | INFO     | sum of deviations: -435042151893.682
[2025-10-10 05:18:16] 2025-10-10 09:16:58,668 | INFO     | mean x: 1760066829.1182482
[2025-10-10 05:18:16] 2025-10-10 09:16:58,668 | INFO     | mean y: 2086881.798540146
[2025-10-10 05:18:16] 2025-10-10 09:16:58,668 | INFO     | -- intersect: 7684663591.07818
[2025-10-10 05:18:16] 2025-10-10 09:16:58,668 | INFO     | intersect: 7684663591.07818
[2025-10-10 05:18:16] 2025-10-10 09:16:58,669 | INFO     | chi2: 3.105797905934609
[2025-10-10 05:18:16] 2025-10-10 09:16:58,669 | INFO     | current chi2=3.105797905934609 (change=1.0445268892172046 %)
[2025-10-10 05:18:16] 2025-10-10 09:16:58,669 | INFO     | left removable region: 20
[2025-10-10 05:18:16] 2025-10-10 09:16:58,670 | INFO     | sum of square deviations: 90779358196.86162
[2025-10-10 05:18:16] 2025-10-10 09:16:58,694 | INFO     | sum of deviations: -283519194971.988
[2025-10-10 05:18:16] 2025-10-10 09:16:58,695 | INFO     | mean x: 1760066798.629518
[2025-10-10 05:18:16] 2025-10-10 09:16:58,695 | INFO     | mean y: 2094599.6626506024
[2025-10-10 05:18:16] 2025-10-10 09:16:58,695 | INFO     | -- intersect: 5499079065.6931305
[2025-10-10 05:18:16] 2025-10-10 09:16:58,695 | INFO     | intersect: 5499079065.6931305
[2025-10-10 05:18:16] 2025-10-10 09:16:58,696 | INFO     | chi2: 1.4338403781704339
[2025-10-10 05:18:16] 2025-10-10 09:16:58,696 | INFO     | -- intersect: 5499079065.6931305
[2025-10-10 05:18:16] 2025-10-10 09:16:58,696 | INFO     | current memory leak: -3.12 B/s (using 664 data points, chi2=1.43)
[2025-10-10 05:18:16] 2025-10-10 09:16:58,722 | INFO     | could have reported an average CPU frequency of 2601 MHz (26 samples)
[2025-10-10 05:18:16] 2025-10-10 09:16:58,722 | INFO     | ..............................
[2025-10-10 05:18:16] 2025-10-10 09:16:58,722 | INFO     | . Timing measurements:
[2025-10-10 05:18:16] 2025-10-10 09:16:58,722 | INFO     | . get job = 0 s
[2025-10-10 05:18:16] 2025-10-10 09:16:58,722 | INFO     | . initial setup = 1 s
[2025-10-10 05:18:16] 2025-10-10 09:16:58,723 | INFO     | . payload setup = 14 s
[2025-10-10 05:18:16] 2025-10-10 09:16:58,723 | INFO     | . stage-in = 0 s
[2025-10-10 05:18:16] 2025-10-10 09:16:58,723 | INFO     | . payload execution = 42408 s
[2025-10-10 05:18:16] 2025-10-10 09:16:58,723 | INFO     | . stage-out = 10 s
[2025-10-10 05:18:16] 2025-10-10 09:16:58,723 | INFO     | . log creation = 3 s
[2025-10-10 05:18:16] 2025-10-10 09:16:58,723 | INFO     | ..............................
[2025-10-10 05:18:16] 2025-10-10 09:16:59,858 | INFO     | 
[2025-10-10 05:18:16] 2025-10-10 09:16:59,859 | INFO     | job summary report
[2025-10-10 05:18:16] 2025-10-10 09:16:59,859 | INFO     | --------------------------------------------------
[2025-10-10 05:18:16] 2025-10-10 09:16:59,859 | INFO     | PanDA job id: 6837338848
[2025-10-10 05:18:16] 2025-10-10 09:16:59,859 | INFO     | task id: 46676269
[2025-10-10 05:18:16] 2025-10-10 09:16:59,859 | INFO     | errors: (none)
[2025-10-10 05:18:16] 2025-10-10 09:16:59,859 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 05:18:16] 2025-10-10 09:16:59,860 | INFO     | pilot state: finished 
[2025-10-10 05:18:16] 2025-10-10 09:16:59,860 | INFO     | transexitcode: 0
[2025-10-10 05:18:16] 2025-10-10 09:16:59,860 | INFO     | exeerrorcode: 0
[2025-10-10 05:18:16] 2025-10-10 09:16:59,860 | INFO     | exeerrordiag: 
[2025-10-10 05:18:16] 2025-10-10 09:16:59,860 | INFO     | exitcode: 0
[2025-10-10 05:18:16] 2025-10-10 09:16:59,860 | INFO     | exitmsg: OK
[2025-10-10 05:18:16] 2025-10-10 09:16:59,860 | INFO     | cpuconsumptiontime: 50982 s
[2025-10-10 05:18:16] 2025-10-10 09:16:59,860 | INFO     | nevents: 400
[2025-10-10 05:18:16] 2025-10-10 09:16:59,860 | INFO     | neventsw: 0
[2025-10-10 05:18:16] 2025-10-10 09:16:59,860 | INFO     | pid: 276946
[2025-10-10 05:18:16] 2025-10-10 09:16:59,861 | INFO     | pgrp: 276946
[2025-10-10 05:18:16] 2025-10-10 09:16:59,861 | INFO     | corecount: 8
[2025-10-10 05:18:16] 2025-10-10 09:16:59,861 | INFO     | event service: False
[2025-10-10 05:18:16] 2025-10-10 09:16:59,861 | INFO     | sizes: {0: 2348622, 1: 2348877, 10: 2349139, 12: 2349167, 42427: 2392044, 42428: 2392043, 42440: 2401225, 42444: 2401281, 42494: 2401475}
[2025-10-10 05:18:16] 2025-10-10 09:16:59,861 | INFO     | --------------------------------------------------
[2025-10-10 05:18:16] 2025-10-10 09:16:59,861 | INFO     | 
[2025-10-10 05:18:16] 2025-10-10 09:16:59,861 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-10 05:18:16] 2025-10-10 09:17:00,146 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,146 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,146 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,147 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,147 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,147 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,147 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,147 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,147 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,147 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,147 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,148 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,148 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,148 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,148 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,148 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,148 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,148 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 05:18:16] 2025-10-10 09:17:00,148 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,148 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 05:18:16] 2025-10-10 09:17:00,149 | INFO     | job 6837338848 has completed (purged errors)
[2025-10-10 05:18:16] 2025-10-10 09:17:00,149 | INFO     | overall cleanup function is called
[2025-10-10 05:18:16] 2025-10-10 09:17:01,283 | INFO     | --- collectZombieJob: --- 10, [276946]
[2025-10-10 05:18:16] 2025-10-10 09:17:01,283 | INFO     | zombie collector waiting for pid 276946
[2025-10-10 05:18:16] 2025-10-10 09:17:01,283 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 05:18:16] 2025-10-10 09:17:01,283 | INFO     | collected zombie processes
[2025-10-10 05:18:16] 2025-10-10 09:17:01,284 | INFO     | will attempt to kill all subprocesses of pid=276946
[2025-10-10 05:18:16] 2025-10-10 09:17:01,888 | INFO     | PID=263706 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 05:18:16] 2025-10-10 09:17:01,889 | INFO     | .. there are 41 such processes running
[2025-10-10 05:18:16] 2025-10-10 09:17:04,750 | INFO     | process IDs to be killed: [276946] (in reverse order)
[2025-10-10 05:18:16] 2025-10-10 09:17:05,360 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 05:18:16] 2025-10-10 09:17:05,361 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 05:18:16] 2025-10-10 09:17:05,546 | INFO     | did not find any defunct processes belonging to 276946
[2025-10-10 05:18:16] 2025-10-10 09:17:05,685 | INFO     | did not find any defunct processes belonging to 276946
[2025-10-10 05:18:16] 2025-10-10 09:17:05,685 | INFO     | ready for new job
[2025-10-10 05:18:16] 2025-10-10 09:17:05,686 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 05:18:16] 2025-10-10 09:17:05,712 | INFO     | ***************************************
[2025-10-10 05:18:16] 2025-10-10 09:17:05,712 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 05:18:16] 2025-10-10 09:17:05,713 | INFO     | ***************************************
[2025-10-10 05:18:16] 2025-10-10 09:17:05,713 | INFO     | 
[2025-10-10 05:18:16] 2025-10-10 09:17:05,728 | INFO     | architecture information:
[2025-10-10 05:18:16] 2025-10-10 09:17:05,753 | INFO     | executing command: cat /etc/os-release
[2025-10-10 05:18:16] 2025-10-10 09:17:05,992 | INFO     | cat /etc/os-release:
[2025-10-10 05:18:16] NAME="CentOS Linux"
[2025-10-10 05:18:16] VERSION="7 (Core)"
[2025-10-10 05:18:16] ID="centos"
[2025-10-10 05:18:16] ID_LIKE="rhel fedora"
[2025-10-10 05:18:16] VERSION_ID="7"
[2025-10-10 05:18:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 05:18:16] ANSI_COLOR="0;31"
[2025-10-10 05:18:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 05:18:16] HOME_URL="https://www.centos.org/"
[2025-10-10 05:18:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 05:18:16] 
[2025-10-10 05:18:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 05:18:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 05:18:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 05:18:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 05:18:16] 
[2025-10-10 05:18:16] 2025-10-10 09:17:05,992 | INFO     | ***************************************
[2025-10-10 05:18:16] 2025-10-10 09:17:06,496 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-10 05:18:16] 2025-10-10 09:17:06,600 | INFO     | sufficient remaining disk space (75194433536 B)
[2025-10-10 05:18:16] 2025-10-10 09:17:06,600 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 05:18:16] 2025-10-10 09:17:06,601 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 05:18:16] 2025-10-10 09:17:06,601 | INFO     | update_server=False
[2025-10-10 05:18:16] 2025-10-10 09:17:06,601 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 05:18:16] 2025-10-10 09:17:07,038 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 05:18:16] 2025-10-10 09:17:07,038 | INFO     | aborting loop
[2025-10-10 05:18:16] 2025-10-10 09:17:07,045 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 05:18:16] 2025-10-10 09:17:07,246 | INFO     | all payload control threads have been joined
[2025-10-10 05:18:16] 2025-10-10 09:17:07,247 | INFO     | all job control threads have been joined
[2025-10-10 05:18:16] 2025-10-10 09:17:07,606 | INFO     | [job] retrieve thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:07,609 | INFO     | all data control threads have been joined
[2025-10-10 05:18:16] 2025-10-10 09:17:07,656 | INFO     | [payload] validate_post thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:08,047 | INFO     | [job] job monitor thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:08,224 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:08,253 | INFO     | [payload] control thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:08,253 | INFO     | [job] control thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:08,487 | INFO     | [data] copytool_in thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:08,581 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:08,616 | INFO     | [data] control thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:08,701 | INFO     | [payload] failed_post thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:08,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 05:18:16] 2025-10-10 09:17:08,865 | INFO     | [job] validate thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:08,880 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:08,892 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:09,071 | INFO     | [data] copytool_out thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:09,775 | INFO     | [job] queue monitor thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:10,094 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 05:18:16] 2025-10-10 09:17:14,112 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 05:18:16] 2025-10-10 09:17:38,946 | INFO     | PID=263706 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 05:18:16] 2025-10-10 09:17:38,947 | INFO     | .. there are 41 such processes running
[2025-10-10 05:18:16] 2025-10-10 09:17:38,948 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 05:18:16] 2025-10-10 09:17:38,948 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 05:18:16] 2025-10-10 09:17:38,948 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 05:18:16] 2025-10-10 09:17:47,914 | INFO     | [monitor] cgroup control has ended
[2025-10-10 05:18:16] 2025-10-10 09:17:48,043 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140122505709376)>', '<ExcThread(monitor, started 140121873565440)>']
[2025-10-10 05:18:16] 2025-10-10 09:17:48,074 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 05:18:16] 2025-10-10 09:17:48,075 | INFO     | [monitor] control thread has ended
[2025-10-10 05:18:16] 2025-10-10 09:17:53,068 | INFO     | all workflow threads have been joined
[2025-10-10 05:18:16] 2025-10-10 09:17:53,069 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 05:18:16] 2025-10-10 09:17:53,069 | INFO     | traces error code: 0
[2025-10-10 05:18:16] 2025-10-10 09:17:53,069 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 05:18:16] 2025-10-10 09:17:54,345 [wrapper] ==== pilot stdout END ====
[2025-10-10 05:18:16] 2025-10-10 09:17:54,514 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 05:18:16] 2025-10-10 09:17:54,533 [wrapper] pilotpid: 263706
[2025-10-10 05:18:16] 2025-10-10 09:17:54,574 [wrapper] Pilot exit status: 0
[2025-10-10 05:18:16] 2025-10-10 09:17:54,872 [wrapper] pandaids: 6837338848 6837338848
[2025-10-10 05:18:16] 2025-10-10 09:17:54,965 [wrapper] cleanup supervisor_pilot 2779267 263707
[2025-10-10 05:18:16] 2025-10-10 09:17:54,968 [wrapper] Test setup, not cleaning
[2025-10-10 05:18:16] 2025-10-10 09:17:54,971 [wrapper] apfmon messages muted
[2025-10-10 05:18:16] 2025-10-10 09:17:55,004 [wrapper] ==== wrapper stdout END ====
[2025-10-10 05:18:16] 2025-10-10 09:17:55,065 [wrapper] ==== wrapper stderr END ====
[2025-10-10 05:18:16]  *** Error codes and diagnostics ***
[2025-10-10 05:18:16]     "exeErrorCode": 0,
[2025-10-10 05:18:16]     "exeErrorDiag": "",
[2025-10-10 05:18:16]     "pilotErrorCode": 0,
[2025-10-10 05:18:16]     "pilotErrorDiag": "",
[2025-10-10 05:18:16]  *** Listing of results directory ***
[2025-10-10 05:18:16] total 641968
[2025-10-10 05:18:16] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 08:43 pilot3.tar.gz
[2025-10-10 05:18:16] -rwx------. 1 boincer umatlas     36292 Oct  9 08:45 runpilot2-wrapper.sh
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 08:45 queuedata.json
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas       100 Oct  9 17:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 05:18:16] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 17:04 run_atlas
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas       105 Oct  9 17:04 job.xml
[2025-10-10 05:18:16] -rw-r--r--. 3 boincer umatlas 224735257 Oct  9 17:04 EVNT.46676267._000736.pool.root.1
[2025-10-10 05:18:16] -rw-r--r--. 3 boincer umatlas 224735257 Oct  9 17:04 ATLAS.root_0
[2025-10-10 05:18:16] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 17:04 start_atlas.sh
[2025-10-10 05:18:16] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 17:04 shared
[2025-10-10 05:18:16] -rw-r--r--. 2 boincer umatlas    569685 Oct  9 17:04 input.tar.gz
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas         0 Oct  9 17:04 boinc_lockfile
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas      2546 Oct  9 17:28 pandaJob.out
[2025-10-10 05:18:16] -rw-------. 1 boincer umatlas    975454 Oct  9 17:28 agis_schedconf.cvmfs.json
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas      6657 Oct 10 05:09 init_data.xml
[2025-10-10 05:18:16] -rw-------. 1 boincer umatlas 192750505 Oct 10 05:13 HITS.46676269._017753.pool.root.1
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas       531 Oct 10 05:13 boinc_task_state.xml
[2025-10-10 05:18:16] -rw-------. 1 boincer umatlas      1056 Oct 10 05:15 memory_monitor_summary.json
[2025-10-10 05:18:16] -rw-------. 1 boincer umatlas   1560580 Oct 10 05:15 agis_ddmendpoints.agis.ALL.json
[2025-10-10 05:18:16] -rw-------. 1 boincer umatlas    776732 Oct 10 05:16 log.46676269._017753.job.log.tgz.1
[2025-10-10 05:18:16] -rw-------. 1 boincer umatlas      7842 Oct 10 05:16 heartbeat.json
[2025-10-10 05:18:16] -rw-------. 1 boincer umatlas        96 Oct 10 05:17 pilot_heartbeat.json
[2025-10-10 05:18:16] -rw-------. 1 boincer umatlas      4823 Oct 10 05:17 pilotlog.txt
[2025-10-10 05:18:16] -rw-------. 1 boincer umatlas   4843901 Oct 10 05:17 log.46676269._017753.job.log.1
[2025-10-10 05:18:16] -rw-------. 1 boincer umatlas       357 Oct 10 05:17 output.list
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas       620 Oct 10 05:17 runtime_log
[2025-10-10 05:18:16] -rw-------. 1 boincer umatlas   5642240 Oct 10 05:17 result.tar.gz
[2025-10-10 05:18:16] -rw-------. 1 boincer umatlas       785 Oct 10 05:17 zHgKDmTC5Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkwZNDmCMJzsn.diag
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas      8774 Oct 10 05:17 runtime_log.err
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 05:18 boinc_mmap_file
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas        28 Oct 10 05:18 wrapper_checkpoint.txt
[2025-10-10 05:18:16] -rw-r--r--. 1 boincer umatlas     23297 Oct 10 05:18 stderr.txt
[2025-10-10 05:18:16] HITS file was successfully produced:
[2025-10-10 05:18:17] -rw-------. 1 boincer umatlas 192750505 Oct 10 05:13 shared/HITS.pool.root.1
[2025-10-10 05:18:17]  *** Contents of shared directory: ***
[2025-10-10 05:18:17] total 413800
[2025-10-10 05:18:17] -rw-r--r--. 3 boincer umatlas 224735257 Oct  9 17:04 ATLAS.root_0
[2025-10-10 05:18:17] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 17:04 start_atlas.sh
[2025-10-10 05:18:17] -rw-r--r--. 2 boincer umatlas    569685 Oct  9 17:04 input.tar.gz
[2025-10-10 05:18:17] -rw-------. 1 boincer umatlas 192750505 Oct 10 05:13 HITS.pool.root.1
[2025-10-10 05:18:17] -rw-------. 1 boincer umatlas   5642240 Oct 10 05:17 result.tar.gz
05:18:18 (255225): run_atlas exited; CPU time 52706.023095
05:18:18 (255225): called boinc_finish(0)

</stderr_txt>
]]>

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