Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:54:03 (113259): wrapper (7.7.26015): starting
11:54:03 (113259): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 11:54:03] Arguments: --nthreads 8
[2025-10-09 11:54:03] Threads: 8
[2025-10-09 11:54:03] Checking for CVMFS
[2025-10-09 11:54:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 11:54:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 11:54:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 11:54:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 11:54:04] 2.13.2.0 2038924 64454 214328 151513 3 1113 24191225 32503809 49128 16776704 0 392609936 99.740 281239516 35084 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 11:54:04] CVMFS is ok
[2025-10-09 11:54:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 11:54:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 11:54:04] Further information can be found at the LHC@home message board.
[2025-10-09 11:54:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 11:54:04] Checking for apptainer binary...
[2025-10-09 11:54:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 11:54:04] Running /usr/bin/apptainer --version
[2025-10-09 11:54:04] apptainer version 1.4.3-1.el9
[2025-10-09 11:54:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 11:54:05] c8-7-1.aglt2.org
[2025-10-09 11:54:05] apptainer works
[2025-10-09 11:54:05] Set ATHENA_PROC_NUMBER=8
[2025-10-09 11:54:05] Set ATHENA_CORE_NUMBER=8
[2025-10-09 11:54:05] Starting ATLAS job with PandaID=6837327547
[2025-10-09 11:54:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 13:17:01]  *** The last 200 lines of the pilot log: ***
[2025-10-09 13:17:01] 2025-10-09 17:16:01,997 | INFO     | adding to output.list: log.46676269._013063.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/e4/log.46676269._013063.job.log.tg
[2025-10-09 13:17:01] 2025-10-09 17:16:01,998 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 13:17:01] 2025-10-09 17:16:01,998 | INFO     | summary of transferred files:
[2025-10-09 13:17:01] 2025-10-09 17:16:01,998 | INFO     |  -- lfn=log.46676269._013063.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 13:17:01] 2025-10-09 17:16:01,998 | INFO     | stage-out finished correctly
[2025-10-09 13:17:01] 2025-10-09 17:16:02,099 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 13:17:01] 2025-10-09 17:16:02,538 | INFO     | monitor loop #284: job 0:6837327547 is in state 'finished'
[2025-10-09 13:17:01] 2025-10-09 17:16:02,538 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:17:01] 2025-10-09 17:16:02,980 | INFO     | time since job start (4878s) is within the limit (172800.0s)
[2025-10-09 13:17:01] 2025-10-09 17:16:03,147 | INFO     | job 6837327547 has state=finished
[2025-10-09 13:17:01] 2025-10-09 17:16:03,147 | INFO     | preparing for final server update for job 6837327547 in state='finished'
[2025-10-09 13:17:01] 2025-10-09 17:16:03,147 | INFO     | this job has now completed (state=finished)
[2025-10-09 13:17:01] 2025-10-09 17:16:03,148 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 13:17:01] 2025-10-09 17:16:03,148 | INFO     | log transfer has been attempted: DONE
[2025-10-09 13:17:01] 2025-10-09 17:16:03,148 | INFO     | job 6837327547 has finished - writing final server update
[2025-10-09 13:17:01] 2025-10-09 17:16:03,148 | INFO     | total number of processed events: 400 (read)
[2025-10-09 13:17:01] 2025-10-09 17:16:03,164 | INFO     | executing command: lscpu
[2025-10-09 13:17:01] 2025-10-09 17:16:03,270 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 13:17:01] 2025-10-09 17:16:04,991 | INFO     | time since job start (4880s) is within the limit (172800.0s)
[2025-10-09 13:17:01] 2025-10-09 17:16:05,054 | INFO     | monitor loop #285: job 0:6837327547 is in state 'finished'
[2025-10-09 13:17:01] 2025-10-09 17:16:05,054 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:17:01] 2025-10-09 17:16:07,000 | INFO     | time since job start (4883s) is within the limit (172800.0s)
[2025-10-09 13:17:01] 2025-10-09 17:16:07,559 | INFO     | monitor loop #286: job 0:6837327547 is in state 'finished'
[2025-10-09 13:17:01] 2025-10-09 17:16:07,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:17:01] 2025-10-09 17:16:09,007 | INFO     | time since job start (4885s) is within the limit (172800.0s)
[2025-10-09 13:17:01] 2025-10-09 17:16:10,070 | INFO     | monitor loop #287: job 0:6837327547 is in state 'finished'
[2025-10-09 13:17:01] 2025-10-09 17:16:10,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:17:01] 2025-10-09 17:16:11,037 | INFO     | time since job start (4887s) is within the limit (172800.0s)
[2025-10-09 13:17:01] 2025-10-09 17:16:12,577 | INFO     | monitor loop #288: job 0:6837327547 is in state 'finished'
[2025-10-09 13:17:01] 2025-10-09 17:16:12,578 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:17:01] 2025-10-09 17:16:13,045 | INFO     | time since job start (4889s) is within the limit (172800.0s)
[2025-10-09 13:17:01] 2025-10-09 17:16:15,053 | INFO     | time since job start (4891s) is within the limit (172800.0s)
[2025-10-09 13:17:01] 2025-10-09 17:16:15,087 | INFO     | monitor loop #289: job 0:6837327547 is in state 'finished'
[2025-10-09 13:17:01] 2025-10-09 17:16:15,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 13:17:01] 2025-10-09 17:16:17,513 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-09 13:17:01] 2025-10-09 17:16:17,527 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3785.3548906250007
[2025-10-09 13:17:01] 2025-10-09 17:16:17,561 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6837327547/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 13:17:01] 2025-10-09 17:16:17,562 | INFO     | extracted standard info from prmon json
[2025-10-09 13:17:01] 2025-10-09 17:16:17,562 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 13:17:01] 2025-10-09 17:16:17,562 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 13:17:01] 2025-10-09 17:16:17,562 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 13:17:01] 2025-10-09 17:16:17,562 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 13:17:01] 2025-10-09 17:16:17,567 | INFO     | fitting pss+swap vs Time
[2025-10-09 13:17:01] 2025-10-09 17:16:17,567 | INFO     | sum of square deviations: 115725974.875
[2025-10-09 13:17:01] 2025-10-09 17:16:17,567 | INFO     | sum of deviations: 600207975.3750001
[2025-10-09 13:17:01] 2025-10-09 17:16:17,567 | INFO     | mean x: 1760027849.625
[2025-10-09 13:17:01] 2025-10-09 17:16:17,567 | INFO     | mean y: 2497890.6805555555
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | -- intersect: -9125813651.892971
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | intersect: -9125813651.892971
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | chi2: 0.006586147463308217
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | -- intersect: -9125813651.892971
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | current memory leak: 5.19 B/s (using 72 data points, chi2=0.01)
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | could have reported an average CPU frequency of 3797 MHz (6 samples)
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | ..............................
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | . Timing measurements:
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | . get job = 0 s
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | . initial setup = 4 s
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | . payload setup = 26 s
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | . stage-in = 0 s
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | . payload execution = 4796 s
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | . stage-out = 1 s
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | . log creation = 0 s
[2025-10-09 13:17:01] 2025-10-09 17:16:17,568 | INFO     | ..............................
[2025-10-09 13:17:01] 2025-10-09 17:16:17,736 | INFO     | 
[2025-10-09 13:17:01] 2025-10-09 17:16:17,736 | INFO     | job summary report
[2025-10-09 13:17:01] 2025-10-09 17:16:17,736 | INFO     | --------------------------------------------------
[2025-10-09 13:17:01] 2025-10-09 17:16:17,736 | INFO     | PanDA job id: 6837327547
[2025-10-09 13:17:01] 2025-10-09 17:16:17,736 | INFO     | task id: 46676269
[2025-10-09 13:17:01] 2025-10-09 17:16:17,736 | INFO     | errors: (none)
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | pilot state: finished 
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | transexitcode: 0
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | exeerrorcode: 0
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | exeerrordiag: 
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | exitcode: 0
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | exitmsg: OK
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | cpuconsumptiontime: 21944 s
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | nevents: 400
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | neventsw: 0
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | pid: 138798
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | pgrp: 138798
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | corecount: 8
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | event service: False
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | sizes: {0: 2348856, 11: 2348856, 20: 2349146, 22: 2349174, 4827: 2375362, 4828: 2375361, 4829: 2384599, 4845: 2384737}
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | --------------------------------------------------
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | 
[2025-10-09 13:17:01] 2025-10-09 17:16:17,737 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-09 13:17:01] 2025-10-09 17:16:17,777 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,777 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,777 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,777 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,777 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,777 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,777 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,777 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,777 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,777 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,778 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,778 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,778 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,778 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,778 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,778 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,778 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,778 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 13:17:01] 2025-10-09 17:16:17,778 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,778 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 13:17:01] 2025-10-09 17:16:17,778 | INFO     | job 6837327547 has completed (purged errors)
[2025-10-09 13:17:01] 2025-10-09 17:16:17,778 | INFO     | overall cleanup function is called
[2025-10-09 13:17:01] 2025-10-09 17:16:18,179 | INFO     | PID=121799 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-09 13:17:01] 2025-10-09 17:16:18,179 | INFO     | .. there are 54 such processes running
[2025-10-09 13:17:01] 2025-10-09 17:16:18,788 | INFO     | --- collectZombieJob: --- 10, [138798]
[2025-10-09 13:17:01] 2025-10-09 17:16:18,788 | INFO     | zombie collector waiting for pid 138798
[2025-10-09 13:17:01] 2025-10-09 17:16:18,788 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 13:17:01] 2025-10-09 17:16:18,788 | INFO     | collected zombie processes
[2025-10-09 13:17:01] 2025-10-09 17:16:18,788 | INFO     | will attempt to kill all subprocesses of pid=138798
[2025-10-09 13:17:01] 2025-10-09 17:16:21,372 | INFO     | process IDs to be killed: [138798] (in reverse order)
[2025-10-09 13:17:01] 2025-10-09 17:16:22,041 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 13:17:01] 2025-10-09 17:16:22,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 13:17:01] 2025-10-09 17:16:22,226 | INFO     | did not find any defunct processes belonging to 138798
[2025-10-09 13:17:01] 2025-10-09 17:16:22,395 | INFO     | did not find any defunct processes belonging to 138798
[2025-10-09 13:17:01] 2025-10-09 17:16:22,395 | INFO     | ready for new job
[2025-10-09 13:17:01] 2025-10-09 17:16:22,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 13:17:01] 2025-10-09 17:16:22,397 | INFO     | ***************************************
[2025-10-09 13:17:01] 2025-10-09 17:16:22,397 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 13:17:01] 2025-10-09 17:16:22,397 | INFO     | ***************************************
[2025-10-09 13:17:01] 2025-10-09 17:16:22,397 | INFO     | 
[2025-10-09 13:17:01] 2025-10-09 17:16:22,434 | INFO     | architecture information:
[2025-10-09 13:17:01] 2025-10-09 17:16:22,439 | INFO     | executing command: cat /etc/os-release
[2025-10-09 13:17:01] 2025-10-09 17:16:22,594 | INFO     | cat /etc/os-release:
[2025-10-09 13:17:01] NAME="CentOS Linux"
[2025-10-09 13:17:01] VERSION="7 (Core)"
[2025-10-09 13:17:01] ID="centos"
[2025-10-09 13:17:01] ID_LIKE="rhel fedora"
[2025-10-09 13:17:01] VERSION_ID="7"
[2025-10-09 13:17:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 13:17:01] ANSI_COLOR="0;31"
[2025-10-09 13:17:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 13:17:01] HOME_URL="https://www.centos.org/"
[2025-10-09 13:17:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 13:17:01] 
[2025-10-09 13:17:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 13:17:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 13:17:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 13:17:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 13:17:01] 
[2025-10-09 13:17:01] 2025-10-09 17:16:22,594 | INFO     | ***************************************
[2025-10-09 13:17:01] 2025-10-09 17:16:23,101 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-09 13:17:01] 2025-10-09 17:16:23,161 | INFO     | sufficient remaining disk space (92439314432 B)
[2025-10-09 13:17:01] 2025-10-09 17:16:23,161 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 13:17:01] 2025-10-09 17:16:23,161 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 13:17:01] 2025-10-09 17:16:23,162 | INFO     | update_server=False
[2025-10-09 13:17:01] 2025-10-09 17:16:23,162 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 13:17:01] 2025-10-09 17:16:23,171 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 13:17:01] 2025-10-09 17:16:23,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 13:17:01] 2025-10-09 17:16:23,538 | INFO     | all job control threads have been joined
[2025-10-09 13:17:01] 2025-10-09 17:16:23,582 | INFO     | all payload control threads have been joined
[2025-10-09 13:17:01] 2025-10-09 17:16:23,629 | INFO     | all data control threads have been joined
[2025-10-09 13:17:01] 2025-10-09 17:16:23,655 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 13:17:01] 2025-10-09 17:16:23,655 | INFO     | aborting loop
[2025-10-09 13:17:01] 2025-10-09 17:16:24,168 | INFO     | [job] retrieve thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:24,179 | INFO     | [job] queue monitor thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:24,396 | INFO     | [payload] failed_post thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:24,503 | INFO     | [payload] validate_post thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:24,519 | INFO     | [job] validate thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:24,536 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:24,536 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:24,548 | INFO     | [job] control thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:24,588 | INFO     | [payload] control thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:24,635 | INFO     | [data] control thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:24,678 | INFO     | [job] job monitor thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:24,717 | INFO     | [data] copytool_in thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:24,717 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:25,061 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:25,198 | INFO     | [data] copytool_out thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:26,450 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 13:17:01] 2025-10-09 17:16:30,479 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 13:17:01] 2025-10-09 17:16:52,979 | INFO     | [monitor] cgroup control has ended
[2025-10-09 13:17:01] 2025-10-09 17:16:54,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140119721482048)>', '<ExcThread(monitor, started 140118400689920)>']
[2025-10-09 13:17:01] 2025-10-09 17:16:54,686 | INFO     | PID=121799 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-09 13:17:01] 2025-10-09 17:16:54,686 | INFO     | .. there are 54 such processes running
[2025-10-09 13:17:01] 2025-10-09 17:16:54,692 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 13:17:01] 2025-10-09 17:16:54,692 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 13:17:01] 2025-10-09 17:16:54,692 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 13:17:01] 2025-10-09 17:16:54,692 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 13:17:01] 2025-10-09 17:16:54,692 | INFO     | [monitor] control thread has ended
[2025-10-09 13:17:01] 2025-10-09 17:16:59,489 | INFO     | all workflow threads have been joined
[2025-10-09 13:17:01] 2025-10-09 17:16:59,489 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 13:17:01] 2025-10-09 17:16:59,489 | INFO     | traces error code: 0
[2025-10-09 13:17:01] 2025-10-09 17:16:59,489 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 13:17:01] 2025-10-09 17:17:00,236 [wrapper] ==== pilot stdout END ====
[2025-10-09 13:17:01] 2025-10-09 17:17:00,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 13:17:01] 2025-10-09 17:17:00,271 [wrapper] pilotpid: 121799
[2025-10-09 13:17:01] 2025-10-09 17:17:00,275 [wrapper] Pilot exit status: 0
[2025-10-09 13:17:01] 2025-10-09 17:17:00,376 [wrapper] pandaids: 6837327547
[2025-10-09 13:17:01] 2025-10-09 17:17:00,600 [wrapper] cleanup supervisor_pilot  937136 121800
[2025-10-09 13:17:01] 2025-10-09 17:17:00,604 [wrapper] Test setup, not cleaning
[2025-10-09 13:17:01] 2025-10-09 17:17:00,619 [wrapper] apfmon messages muted
[2025-10-09 13:17:01] 2025-10-09 17:17:00,624 [wrapper] ==== wrapper stdout END ====
[2025-10-09 13:17:01] 2025-10-09 17:17:00,653 [wrapper] ==== wrapper stderr END ====
[2025-10-09 13:17:01]  *** Error codes and diagnostics ***
[2025-10-09 13:17:01]     "exeErrorCode": 0,
[2025-10-09 13:17:01]     "exeErrorDiag": "",
[2025-10-09 13:17:01]     "pilotErrorCode": 0,
[2025-10-09 13:17:01]     "pilotErrorDiag": "",
[2025-10-09 13:17:01]  *** Listing of results directory ***
[2025-10-09 13:17:01] total 406140
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 06:27 pilot3.tar.gz
[2025-10-09 13:17:01] -rwx------. 1 boincer umatlas     36292 Oct  9 06:42 runpilot2-wrapper.sh
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 06:44 queuedata.json
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas       100 Oct  9 11:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 13:17:01] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 11:54 run_atlas
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas       105 Oct  9 11:54 job.xml
[2025-10-09 13:17:01] -rw-r--r--. 2 boincer umatlas 219415892 Oct  9 11:54 EVNT.46676267._000530.pool.root.1
[2025-10-09 13:17:01] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 11:54 start_atlas.sh
[2025-10-09 13:17:01] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 11:54 shared
[2025-10-09 13:17:01] -rw-r--r--. 2 boincer umatlas    569681 Oct  9 11:54 input.tar.gz
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas         0 Oct  9 11:54 boinc_lockfile
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas      2550 Oct  9 11:54 pandaJob.out
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas    975462 Oct  9 11:54 agis_schedconf.cvmfs.json
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas   1560401 Oct  9 11:54 agis_ddmendpoints.agis.ALL.json
[2025-10-09 13:17:01] drwx------. 5 boincer umatlas      4096 Oct  9 11:54 pilot3
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas      7160 Oct  9 13:09 init_data.xml
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas 190683683 Oct  9 13:15 HITS.46676269._013063.pool.root.1
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas       529 Oct  9 13:15 boinc_task_state.xml
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas      1036 Oct  9 13:15 memory_monitor_summary.json
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas    324790 Oct  9 13:16 log.46676269._013063.job.log.tgz.1
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas      7776 Oct  9 13:16 heartbeat.json
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas        95 Oct  9 13:16 pilot_heartbeat.json
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas      4823 Oct  9 13:16 pilotlog.txt
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas    617503 Oct  9 13:17 log.46676269._013063.job.log.1
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 13:17 boinc_mmap_file
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas        27 Oct  9 13:17 wrapper_checkpoint.txt
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas       357 Oct  9 13:17 output.list
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas       620 Oct  9 13:17 runtime_log
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas    962560 Oct  9 13:17 result.tar.gz
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas       652 Oct  9 13:17 WMONDmjH3Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQDZNDm2dmH4m.diag
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas      8693 Oct  9 13:17 runtime_log.err
[2025-10-09 13:17:01] -rw-r--r--. 1 boincer umatlas     22130 Oct  9 13:17 stderr.txt
[2025-10-09 13:17:01] HITS file was successfully produced:
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas 190683683 Oct  9 13:15 shared/HITS.pool.root.1
[2025-10-09 13:17:01]  *** Contents of shared directory: ***
[2025-10-09 13:17:01] total 402016
[2025-10-09 13:17:01] -rw-r--r--. 2 boincer umatlas 219415892 Oct  9 11:54 ATLAS.root_0
[2025-10-09 13:17:01] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 11:54 start_atlas.sh
[2025-10-09 13:17:01] -rw-r--r--. 2 boincer umatlas    569681 Oct  9 11:54 input.tar.gz
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas 190683683 Oct  9 13:15 HITS.pool.root.1
[2025-10-09 13:17:01] -rw-------. 1 boincer umatlas    962560 Oct  9 13:17 result.tar.gz
13:17:02 (113259): run_atlas exited; CPU time 22031.162864
13:17:02 (113259): called boinc_finish(0)

</stderr_txt>
]]>

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