Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-10 12:37:38 (4761): vboxwrapper version 26210
2025-10-10 12:37:38 (4761): BOINC client version: 8.2.5
2025-10-10 12:37:38 (4761): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-10-10 12:37:38 (4761): Detected: Sandbox Configuration Enabled
2025-10-10 12:37:38 (4761): Successfully copied 'init_data.xml' to the shared directory.
2025-10-10 12:37:38 (4761): Create VM. (boinc_e09a4b6513be5a04, slot#0)
2025-10-10 12:37:38 (4761): Setting Memory Size for VM. (4800MB)
2025-10-10 12:37:39 (4761): Setting CPU Count for VM. (8)
2025-10-10 12:37:39 (4761): Setting Chipset Options for VM.
2025-10-10 12:37:39 (4761): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-10 12:37:39 (4761): Setting Boot Options for VM.
2025-10-10 12:37:39 (4761): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-10 12:37:39 (4761): Enabling VM Network Access.
2025-10-10 12:37:39 (4761): Disabling USB Support for VM.
2025-10-10 12:37:39 (4761): Disabling COM Port Support for VM.
2025-10-10 12:37:39 (4761): Disabling Audio Support for VM.
2025-10-10 12:37:39 (4761): Disabling Clipboard Support for VM.
2025-10-10 12:37:39 (4761): Disabling Drag and Drop Support for VM.
2025-10-10 12:37:39 (4761): Adding storage controller(s) to VM.
2025-10-10 12:37:39 (4761): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-10 12:37:40 (4761): Adding VirtualBox Guest Additions to VM.
2025-10-10 12:37:40 (4761): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-10 12:37:40 (4761): forwarding host port 50436 to guest port 80
2025-10-10 12:37:40 (4761): Enabling remote desktop for VM.
2025-10-10 12:37:40 (4761): Required extension pack not installed, remote desktop not enabled.
2025-10-10 12:37:40 (4761): Enabling shared directory for VM.
2025-10-10 12:37:40 (4761): Starting VM using VBoxManage interface. (boinc_e09a4b6513be5a04, slot#0)
2025-10-10 12:37:46 (4761): Successfully started VM. (PID = '4834')
2025-10-10 12:37:46 (4761): Reporting VM Process ID to BOINC.
2025-10-10 12:37:46 (4761): Guest Log: BIOS: VirtualBox 7.1.6
2025-10-10 12:37:46 (4761): Guest Log: CPUID EDX: 0x178bfbff
2025-10-10 12:37:46 (4761): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-10 12:37:46 (4761): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-10 12:37:46 (4761): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-10 12:37:46 (4761): Detected: Web Application Enabled (http://localhost:50436)
2025-10-10 12:37:46 (4761): Preference change detected
2025-10-10 12:37:46 (4761): Setting CPU throttle for VM. (100%)
2025-10-10 12:37:46 (4761): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 12:37:48 (4761): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-10 12:37:48 (4761): Guest Log: BIOS: Booting from Hard Disk...
2025-10-10 12:37:52 (4761): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-10 12:37:52 (4761): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-10 12:37:52 (4761): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-10 12:38:02 (4761): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-10 12:38:02 (4761): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-10 12:38:16 (4761): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-10 12:38:16 (4761): Guest Log: 00:00:00.000289 main     Log opened 2025-10-10T10:38:15.396064000Z
2025-10-10 12:38:16 (4761): Guest Log: 00:00:00.000501 main     OS Product: Linux
2025-10-10 12:38:16 (4761): Guest Log: 00:00:00.000615 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-10 12:38:16 (4761): Guest Log: 00:00:00.000719 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-10 12:38:16 (4761): Guest Log: 00:00:00.000826 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-10 12:38:16 (4761): Guest Log: 00:00:00.000828 main     Process ID: 1383
2025-10-10 12:38:16 (4761): Guest Log: 00:00:00.000841 main     Package type: LINUX_64BITS_GENERIC
2025-10-10 12:38:16 (4761): Guest Log: 00:00:00.004715 main     5.2.32 r132073 started. Verbose level = 0
2025-10-10 12:38:17 (4761): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-10 12:38:17 (4761): Guest Log: [INFO] Mounting shared directory
2025-10-10 12:38:17 (4761): Guest Log: [INFO] Checking for init_data.xml
2025-10-10 12:38:22 (4761): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-10 12:38:22 (4761): Guest Log: [INFO] Detected branch: prod
2025-10-10 12:38:22 (4761): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-10 12:38:22 (4761): Guest Log: Copying input files
2025-10-10 12:38:26 (4761): Guest Log: Copied input files into RunAtlas.
2025-10-10 12:38:27 (4761): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-10 12:38:27 (4761): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-10 12:38:27 (4761): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-10 12:38:27 (4761): Guest Log: Further information can be found at the LHC@home message board.
2025-10-10 12:38:35 (4761): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-10 12:38:35 (4761): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-10 12:38:35 (4761): Guest Log: 2.6.3.0 1658 0 34200 151543 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-10 12:38:37 (4761): Guest Log: copied the webapp to /var/www
2025-10-10 12:38:37 (4761): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-10 12:38:37 (4761): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-10 12:38:37 (4761): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-10 12:38:37 (4761): Guest Log:  *** Starting ATLAS job. (PandaID=6837343534 taskID=46676269) ***
2025-10-10 14:17:05 (4761): Status Report: Elapsed Time: '6000.000000'
2025-10-10 14:17:05 (4761): Status Report: CPU Time: '37788.150000'
2025-10-10 15:56:26 (4761): Status Report: Elapsed Time: '12000.000000'
2025-10-10 15:56:26 (4761): Status Report: CPU Time: '78989.720000'
2025-10-10 17:35:45 (4761): Status Report: Elapsed Time: '18000.000000'
2025-10-10 17:35:45 (4761): Status Report: CPU Time: '120061.220000'
2025-10-10 18:13:06 (4761): Guest Log:  *** Job finished ***
2025-10-10 18:13:06 (4761): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:05,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:05,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:33,067 | INFO     | [monitor] cgroup control has ended
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:33,722 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683761567552)>', '<ExcThread(monitor, started 140683163711232)>']
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:34,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:34,032 | INFO     | [monitor] control thread has ended
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:38,724 | INFO     | all workflow threads have been joined
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:38,724 | INFO     | end of generic workflow (traces error code: 0)
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:38,724 | INFO     | traces error code: 0
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:38,725 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:38,878 [wrapper] ==== pilot stdout END ====
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:38,897 [wrapper] ==== wrapper stdout RESUME ====
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:38,916 [wrapper] pilotpid: 6091
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:38,936 [wrapper] Pilot exit status: 0
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:39,062 [wrapper] pandaids: 6837343534
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:39,186 [wrapper] cleanup supervisor_pilot 21180 6092
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:39,214 [wrapper] Test setup, not cleaning
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:39,234 [wrapper] apfmon messages muted
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:39,253 [wrapper] ==== wrapper stdout END ====
2025-10-10 18:13:06 (4761): Guest Log: 2025-10-10 16:12:39,273 [wrapper] ==== wrapper stderr END ====
2025-10-10 18:13:06 (4761): Guest Log:  *** Error codes and diagnostics ***
2025-10-10 18:13:06 (4761): Guest Log:     "exeErrorCode": 0,
2025-10-10 18:13:06 (4761): Guest Log:     "exeErrorDiag": "",
2025-10-10 18:13:06 (4761): Guest Log:     "pilotErrorCode": 0,
2025-10-10 18:13:06 (4761): Guest Log:     "pilotErrorDiag": "",
2025-10-10 18:13:06 (4761): Guest Log:  *** Listing of results directory ***
2025-10-10 18:13:06 (4761): Guest Log: total 198564
2025-10-10 18:13:06 (4761): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct  9 12:53 pilot3.tar.gz
2025-10-10 18:13:06 (4761): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  9 13:19 queuedata.json
2025-10-10 18:13:06 (4761): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  9 13:20 runpilot2-wrapper.sh
2025-10-10 18:13:06 (4761): Guest Log: -rw-r-----. 1 atlas atlas     15120 Oct 10 10:38 start_atlas.sh
2025-10-10 18:13:06 (4761): Guest Log: -rw-r-----. 1 atlas atlas    569676 Oct 10 10:38 input.tar.gz
2025-10-10 18:13:06 (4761): Guest Log: -rw-r--r--. 1 atlas atlas      7534 Oct 10 10:38 init_data.xml
2025-10-10 18:13:06 (4761): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 10:38 EVNT.46676267._000765.pool.root.1 -> /data/./ATLAS.root_0
2025-10-10 18:13:06 (4761): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Oct 10 10:38 pandaJob.out
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas    975528 Oct 10 10:40 agis_schedconf.cvmfs.json
2025-10-10 18:13:06 (4761): Guest Log: drwx------. 5 atlas atlas      4096 Oct 10 10:40 pilot3
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas 193900764 Oct 10 16:10 HITS.46676269._018480.pool.root.1
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas      1035 Oct 10 16:10 memory_monitor_summary.json
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 16:11 agis_ddmendpoints.agis.ALL.json
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas    498881 Oct 10 16:11 log.46676269._018480.job.log.tgz.1
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas      7804 Oct 10 16:11 heartbeat.json
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas        95 Oct 10 16:12 pilot_heartbeat.json
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 10 16:12 pilotlog.txt
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas   2297655 Oct 10 16:12 log.46676269._018480.job.log.1
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 16:12 output.list
2025-10-10 18:13:06 (4761): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 16:12 runtime_log
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas   2816000 Oct 10 16:12 result.tar.gz
2025-10-10 18:13:06 (4761): Guest Log: -rw-r--r--. 1 atlas atlas      8681 Oct 10 16:12 runtime_log.err
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas       678 Oct 10 16:12 5gvKDmfk5Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmwyNMDmA0lVxn.diag
2025-10-10 18:13:06 (4761): Guest Log: Looking for outputfile HITS.46676269._018480.pool.root.1
2025-10-10 18:13:06 (4761): Guest Log: HITS file was successfully produced
2025-10-10 18:13:06 (4761): Guest Log: -rw-------. 1 atlas atlas 193900764 Oct 10 16:10 /home/atlas/RunAtlas/HITS.46676269._018480.pool.root.1
2025-10-10 18:13:07 (4761): Guest Log: Successfully finished the ATLAS job!
2025-10-10 18:13:07 (4761): Guest Log: Copying the results back to the shared directory!
2025-10-10 18:13:07 (4761): Guest Log:  *** Contents of shared directory: ***
2025-10-10 18:13:07 (4761): Guest Log: total 232200
2025-10-10 18:13:07 (4761): Guest Log: -rw-rw----. 1 root root 219466859 Oct 10 10:37 ATLAS.root_0
2025-10-10 18:13:07 (4761): Guest Log: -rw-rw-r--. 1 root root      7534 Oct 10 10:37 init_data.xml
2025-10-10 18:13:07 (4761): Guest Log: -rw-rw----. 1 root root    569676 Oct 10 10:37 input.tar.gz
2025-10-10 18:13:07 (4761): Guest Log: -rw-r--r--. 1 root root   2816000 Oct 10  2025 result.tar.gz
2025-10-10 18:13:07 (4761): Guest Log: -rw-rw----. 1 root root     15120 Oct 10 10:37 start_atlas.sh
2025-10-10 18:13:07 (4761): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-10 18:13:07 (4761): VM Completion File Detected.
2025-10-10 18:13:07 (4761): Powering off VM.
2025-10-10 18:13:07 (4761): Successfully stopped VM.
2025-10-10 18:13:07 (4761): Deregistering VM. (boinc_e09a4b6513be5a04, slot#0)
2025-10-10 18:13:07 (4761): Removing network bandwidth throttle group from VM.
2025-10-10 18:13:07 (4761): Removing VM from VirtualBox.
2025-10-10 18:13:13 (4761): called boinc_finish(0)

</stderr_txt>
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