Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:21:47 (3915113): wrapper (7.7.26015): starting
10:21:47 (3915113): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 10:21:47] Arguments: --nthreads 8
[2025-10-09 10:21:47] Threads: 8
[2025-10-09 10:21:47] Checking for CVMFS
[2025-10-09 10:21:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 10:21:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 10:21:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 10:21:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 10:21:48] 2.13.2.0 5270 1473 117184 151513 1 448 32906751 40960000 20190 16776704 0 4132131 99.659 3056569 38382 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 10:21:48] CVMFS is ok
[2025-10-09 10:21:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 10:21:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 10:21:48] Further information can be found at the LHC@home message board.
[2025-10-09 10:21:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 10:21:48] Checking for apptainer binary...
[2025-10-09 10:21:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 10:21:48] Running /usr/bin/apptainer --version
[2025-10-09 10:21:48] apptainer version 1.4.3-1.el9
[2025-10-09 10:21:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 10:21:48] c-212-8.aglt2.org
[2025-10-09 10:21:48] apptainer works
[2025-10-09 10:21:48] Set ATHENA_PROC_NUMBER=8
[2025-10-09 10:21:48] Set ATHENA_CORE_NUMBER=8
[2025-10-09 10:21:48] Starting ATLAS job with PandaID=6828225524
[2025-10-09 10:21:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 12:21:25]  *** The last 200 lines of the pilot log: ***
[2025-10-09 12:21:25] 2025-10-09 16:20:29,551 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 12:21:25] 2025-10-09 16:20:29,551 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 12:21:25] 2025-10-09 16:20:29,564 | INFO     | fitting pss+swap vs Time
[2025-10-09 12:21:25] 2025-10-09 16:20:29,564 | INFO     | sum of square deviations: 484017572.43965524
[2025-10-09 12:21:25] 2025-10-09 16:20:29,565 | INFO     | sum of deviations: 7321493556.7241335
[2025-10-09 12:21:25] 2025-10-09 16:20:29,565 | INFO     | mean x: 1760023257.6982758
[2025-10-09 12:21:25] 2025-10-09 16:20:29,565 | INFO     | mean y: 2589958.620689655
[2025-10-09 12:21:25] 2025-10-09 16:20:29,565 | INFO     | -- intersect: -26620408202.31716
[2025-10-09 12:21:25] 2025-10-09 16:20:29,565 | INFO     | intersect: -26620408202.31716
[2025-10-09 12:21:25] 2025-10-09 16:20:29,565 | INFO     | chi2: 1.9886524968324308
[2025-10-09 12:21:25] 2025-10-09 16:20:29,565 | INFO     | sum of square deviations: 424069819.7477482
[2025-10-09 12:21:25] 2025-10-09 16:20:29,566 | INFO     | sum of deviations: 15259323168.45045
[2025-10-09 12:21:25] 2025-10-09 16:20:29,566 | INFO     | mean x: 1760023105.1711712
[2025-10-09 12:21:25] 2025-10-09 16:20:29,566 | INFO     | mean y: 2609432.7657657657
[2025-10-09 12:21:25] 2025-10-09 16:20:29,566 | INFO     | -- intersect: -63328380171.073326
[2025-10-09 12:21:25] 2025-10-09 16:20:29,566 | INFO     | intersect: -63328380171.073326
[2025-10-09 12:21:25] 2025-10-09 16:20:29,632 | INFO     | chi2: 1.1734737826391994
[2025-10-09 12:21:25] 2025-10-09 16:20:29,633 | INFO     | current chi2=1.1734737826391994 (change=40.991511362174435 %)
[2025-10-09 12:21:25] 2025-10-09 16:20:29,633 | INFO     | sum of square deviations: 369304903.4433961
[2025-10-09 12:21:25] 2025-10-09 16:20:29,633 | INFO     | sum of deviations: 14848789157.283024
[2025-10-09 12:21:25] 2025-10-09 16:20:29,633 | INFO     | mean x: 1760022952.6698112
[2025-10-09 12:21:25] 2025-10-09 16:20:29,633 | INFO     | mean y: 2608289.150943396
[2025-10-09 12:21:25] 2025-10-09 16:20:29,634 | INFO     | -- intersect: -70763334682.35466
[2025-10-09 12:21:25] 2025-10-09 16:20:29,634 | INFO     | intersect: -70763334682.35466
[2025-10-09 12:21:25] 2025-10-09 16:20:29,634 | INFO     | chi2: 1.1732754444056235
[2025-10-09 12:21:25] 2025-10-09 16:20:29,634 | INFO     | current chi2=1.1732754444056235 (change=0.016901803560526438 %)
[2025-10-09 12:21:25] 2025-10-09 16:20:29,634 | INFO     | right removable region: 105
[2025-10-09 12:21:25] 2025-10-09 16:20:29,634 | INFO     | sum of square deviations: 424083852.23423517
[2025-10-09 12:21:25] 2025-10-09 16:20:29,634 | INFO     | sum of deviations: -7836208265.819819
[2025-10-09 12:21:25] 2025-10-09 16:20:29,634 | INFO     | mean x: 1760023410.2072072
[2025-10-09 12:21:25] 2025-10-09 16:20:29,635 | INFO     | mean y: 2627749.774774775
[2025-10-09 12:21:25] 2025-10-09 16:20:29,635 | INFO     | -- intersect: 32524285724.821625
[2025-10-09 12:21:25] 2025-10-09 16:20:29,635 | INFO     | intersect: 32524285724.821625
[2025-10-09 12:21:25] 2025-10-09 16:20:29,635 | INFO     | chi2: 0.8462280404365295
[2025-10-09 12:21:25] 2025-10-09 16:20:29,635 | INFO     | current chi2=0.8462280404365295 (change=57.4471637561404 %)
[2025-10-09 12:21:25] 2025-10-09 16:20:29,635 | INFO     | sum of square deviations: 369313019.50943273
[2025-10-09 12:21:25] 2025-10-09 16:20:29,635 | INFO     | sum of deviations: -8094333646.9811325
[2025-10-09 12:21:25] 2025-10-09 16:20:29,635 | INFO     | mean x: 1760023562.7169812
[2025-10-09 12:21:25] 2025-10-09 16:20:29,636 | INFO     | mean y: 2628452.933962264
[2025-10-09 12:21:25] 2025-10-09 16:20:29,636 | INFO     | -- intersect: 38577542389.36452
[2025-10-09 12:21:25] 2025-10-09 16:20:29,636 | INFO     | intersect: 38577542389.36452
[2025-10-09 12:21:25] 2025-10-09 16:20:29,636 | INFO     | chi2: 0.8458096145952152
[2025-10-09 12:21:25] 2025-10-09 16:20:29,636 | INFO     | current chi2=0.8458096145952152 (change=0.049445991070977184 %)
[2025-10-09 12:21:25] 2025-10-09 16:20:29,636 | INFO     | left removable region: 20
[2025-10-09 12:21:25] 2025-10-09 16:20:29,636 | INFO     | sum of square deviations: 190401021.60000017
[2025-10-09 12:21:25] 2025-10-09 16:20:29,636 | INFO     | sum of deviations: -411391172.4
[2025-10-09 12:21:25] 2025-10-09 16:20:29,636 | INFO     | mean x: 1760023532.2
[2025-10-09 12:21:25] 2025-10-09 16:20:29,636 | INFO     | mean y: 2655118.0823529414
[2025-10-09 12:21:25] 2025-10-09 16:20:29,637 | INFO     | -- intersect: 3805461102.4140387
[2025-10-09 12:21:25] 2025-10-09 16:20:29,637 | INFO     | intersect: 3805461102.4140387
[2025-10-09 12:21:25] 2025-10-09 16:20:29,637 | INFO     | chi2: 0.002187042045934312
[2025-10-09 12:21:25] 2025-10-09 16:20:29,637 | INFO     | -- intersect: 3805461102.4140387
[2025-10-09 12:21:25] 2025-10-09 16:20:29,637 | INFO     | current memory leak: -2.16 B/s (using 85 data points, chi2=0.00)
[2025-10-09 12:21:25] 2025-10-09 16:20:29,637 | INFO     | could have reported an average CPU frequency of 3113 MHz (7 samples)
[2025-10-09 12:21:25] 2025-10-09 16:20:29,637 | INFO     | ..............................
[2025-10-09 12:21:25] 2025-10-09 16:20:29,637 | INFO     | . Timing measurements:
[2025-10-09 12:21:25] 2025-10-09 16:20:29,638 | INFO     | . get job = 0 s
[2025-10-09 12:21:25] 2025-10-09 16:20:29,638 | INFO     | . initial setup = 2 s
[2025-10-09 12:21:25] 2025-10-09 16:20:29,638 | INFO     | . payload setup = 5 s
[2025-10-09 12:21:25] 2025-10-09 16:20:29,638 | INFO     | . stage-in = 0 s
[2025-10-09 12:21:25] 2025-10-09 16:20:29,638 | INFO     | . payload execution = 7067 s
[2025-10-09 12:21:25] 2025-10-09 16:20:29,638 | INFO     | . stage-out = 1 s
[2025-10-09 12:21:25] 2025-10-09 16:20:29,638 | INFO     | . log creation = 0 s
[2025-10-09 12:21:25] 2025-10-09 16:20:29,638 | INFO     | ..............................
[2025-10-09 12:21:25] 2025-10-09 16:20:29,915 | INFO     | 
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | job summary report
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | --------------------------------------------------
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | PanDA job id: 6828225524
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | task id: 46376994
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | errors: (none)
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | pilot state: finished 
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | transexitcode: 0
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | exeerrorcode: 0
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | exeerrordiag: 
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | exitcode: 0
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | exitmsg: OK
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | cpuconsumptiontime: 32760 s
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | nevents: 400
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | neventsw: 0
[2025-10-09 12:21:25] 2025-10-09 16:20:29,916 | INFO     | pid: 3926587
[2025-10-09 12:21:25] 2025-10-09 16:20:29,917 | INFO     | pgrp: 3926587
[2025-10-09 12:21:25] 2025-10-09 16:20:29,917 | INFO     | corecount: 8
[2025-10-09 12:21:25] 2025-10-09 16:20:29,917 | INFO     | event service: False
[2025-10-09 12:21:25] 2025-10-09 16:20:29,917 | INFO     | sizes: {0: 2348870, 7: 2349132, 11: 2349160, 7077: 2376532, 7080: 2385586, 7089: 2385724}
[2025-10-09 12:21:25] 2025-10-09 16:20:29,917 | INFO     | --------------------------------------------------
[2025-10-09 12:21:25] 2025-10-09 16:20:29,917 | INFO     | 
[2025-10-09 12:21:25] 2025-10-09 16:20:29,917 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-09 12:21:25] 2025-10-09 16:20:30,043 | INFO     | time since job start (7105s) is within the limit (172800.0s)
[2025-10-09 12:21:25] 2025-10-09 16:20:30,114 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,114 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,114 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,114 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,114 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,114 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,114 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | job 6828225524 has completed (purged errors)
[2025-10-09 12:21:25] 2025-10-09 16:20:30,115 | INFO     | overall cleanup function is called
[2025-10-09 12:21:25] 2025-10-09 16:20:31,148 | INFO     | --- collectZombieJob: --- 10, [3926587]
[2025-10-09 12:21:25] 2025-10-09 16:20:31,149 | INFO     | zombie collector waiting for pid 3926587
[2025-10-09 12:21:25] 2025-10-09 16:20:31,149 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 12:21:25] 2025-10-09 16:20:31,149 | INFO     | collected zombie processes
[2025-10-09 12:21:25] 2025-10-09 16:20:31,149 | INFO     | will attempt to kill all subprocesses of pid=3926587
[2025-10-09 12:21:25] 2025-10-09 16:20:33,551 | INFO     | process IDs to be killed: [3926587] (in reverse order)
[2025-10-09 12:21:25] 2025-10-09 16:20:34,283 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 12:21:25] 2025-10-09 16:20:34,283 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 12:21:25] 2025-10-09 16:20:34,358 | INFO     | did not find any defunct processes belonging to 3926587
[2025-10-09 12:21:25] 2025-10-09 16:20:34,458 | INFO     | did not find any defunct processes belonging to 3926587
[2025-10-09 12:21:25] 2025-10-09 16:20:34,459 | INFO     | ready for new job
[2025-10-09 12:21:25] 2025-10-09 16:20:34,459 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 12:21:25] 2025-10-09 16:20:34,461 | INFO     | ***************************************
[2025-10-09 12:21:25] 2025-10-09 16:20:34,461 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-09 12:21:25] 2025-10-09 16:20:34,461 | INFO     | ***************************************
[2025-10-09 12:21:25] 2025-10-09 16:20:34,461 | INFO     | 
[2025-10-09 12:21:25] 2025-10-09 16:20:34,515 | INFO     | architecture information:
[2025-10-09 12:21:25] 2025-10-09 16:20:34,518 | INFO     | executing command: cat /etc/os-release
[2025-10-09 12:21:25] 2025-10-09 16:20:34,589 | INFO     | cat /etc/os-release:
[2025-10-09 12:21:25] NAME="CentOS Linux"
[2025-10-09 12:21:25] VERSION="7 (Core)"
[2025-10-09 12:21:25] ID="centos"
[2025-10-09 12:21:25] ID_LIKE="rhel fedora"
[2025-10-09 12:21:25] VERSION_ID="7"
[2025-10-09 12:21:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 12:21:25] ANSI_COLOR="0;31"
[2025-10-09 12:21:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 12:21:25] HOME_URL="https://www.centos.org/"
[2025-10-09 12:21:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 12:21:25] 
[2025-10-09 12:21:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 12:21:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 12:21:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 12:21:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 12:21:25] 
[2025-10-09 12:21:25] 2025-10-09 16:20:34,589 | INFO     | ***************************************
[2025-10-09 12:21:25] 2025-10-09 16:20:35,101 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-09 12:21:25] 2025-10-09 16:20:35,142 | INFO     | sufficient remaining disk space (127709216768 B)
[2025-10-09 12:21:25] 2025-10-09 16:20:35,143 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 12:21:25] 2025-10-09 16:20:35,143 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 12:21:25] 2025-10-09 16:20:35,143 | INFO     | update_server=False
[2025-10-09 12:21:25] 2025-10-09 16:20:35,143 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 12:21:25] 2025-10-09 16:20:35,143 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 12:21:25] 2025-10-09 16:20:35,144 | INFO     | aborting loop
[2025-10-09 12:21:25] 2025-10-09 16:20:35,147 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 12:21:25] 2025-10-09 16:20:35,477 | INFO     | all job control threads have been joined
[2025-10-09 12:21:25] 2025-10-09 16:20:35,642 | INFO     | all payload control threads have been joined
[2025-10-09 12:21:25] 2025-10-09 16:20:35,877 | INFO     | all data control threads have been joined
[2025-10-09 12:21:25] 2025-10-09 16:20:36,131 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 12:21:25] 2025-10-09 16:20:36,150 | INFO     | [job] retrieve thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:36,151 | INFO     | [job] job monitor thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:36,153 | INFO     | [job] queue monitor thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:36,312 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:36,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 12:21:25] 2025-10-09 16:20:36,442 | INFO     | [job] validate thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:36,446 | INFO     | [data] copytool_in thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:36,483 | INFO     | [job] control thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:36,648 | INFO     | [payload] control thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:36,883 | INFO     | [data] control thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:37,095 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:37,256 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:37,317 | INFO     | [payload] validate_post thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:37,536 | INFO     | [payload] failed_post thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:37,687 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:38,365 | INFO     | [data] copytool_out thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:20:40,161 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 12:21:25] 2025-10-09 16:21:06,800 | INFO     | PID=3920168 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 12:21:25] 2025-10-09 16:21:06,801 | INFO     | .. there are 17 such processes running
[2025-10-09 12:21:25] 2025-10-09 16:21:06,805 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 12:21:25] 2025-10-09 16:21:06,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 12:21:25] 2025-10-09 16:21:06,805 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 12:21:25] 2025-10-09 16:21:17,718 | INFO     | [monitor] cgroup control has ended
[2025-10-09 12:21:25] 2025-10-09 16:21:19,467 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140413461210944)>', '<ExcThread(monitor, started 140412589164288)>']
[2025-10-09 12:21:25] 2025-10-09 16:21:19,926 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 12:21:25] 2025-10-09 16:21:19,927 | INFO     | [monitor] control thread has ended
[2025-10-09 12:21:25] 2025-10-09 16:21:24,493 | INFO     | all workflow threads have been joined
[2025-10-09 12:21:25] 2025-10-09 16:21:24,494 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 12:21:25] 2025-10-09 16:21:24,494 | INFO     | traces error code: 0
[2025-10-09 12:21:25] 2025-10-09 16:21:24,494 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 12:21:25] 2025-10-09 16:21:25,375 [wrapper] ==== pilot stdout END ====
[2025-10-09 12:21:25] 2025-10-09 16:21:25,378 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 12:21:25] 2025-10-09 16:21:25,380 [wrapper] pilotpid: 3920168
[2025-10-09 12:21:25] 2025-10-09 16:21:25,382 [wrapper] Pilot exit status: 0
[2025-10-09 12:21:25] 2025-10-09 16:21:25,421 [wrapper] pandaids: 6828225524
[2025-10-09 12:21:25] 2025-10-09 16:21:25,641 [wrapper] cleanup supervisor_pilot 4180472 3920169
[2025-10-09 12:21:25] 2025-10-09 16:21:25,660 [wrapper] Test setup, not cleaning
[2025-10-09 12:21:25] 2025-10-09 16:21:25,676 [wrapper] apfmon messages muted
[2025-10-09 12:21:25] 2025-10-09 16:21:25,681 [wrapper] ==== wrapper stdout END ====
[2025-10-09 12:21:25] 2025-10-09 16:21:25,684 [wrapper] ==== wrapper stderr END ====
[2025-10-09 12:21:25]  *** Error codes and diagnostics ***
[2025-10-09 12:21:25]     "exeErrorCode": 0,
[2025-10-09 12:21:25]     "exeErrorDiag": "",
[2025-10-09 12:21:25]     "pilotErrorCode": 0,
[2025-10-09 12:21:25]     "pilotErrorDiag": "",
[2025-10-09 12:21:25]  *** Listing of results directory ***
[2025-10-09 12:21:25] total 415144
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas    552446 Oct  3 04:22 pilot3.tar.gz
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas      5112 Oct  3 04:40 queuedata.json
[2025-10-09 12:21:25] -rwx------. 1 boincer umatlas     36292 Oct  3 04:43 runpilot2-wrapper.sh
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas       100 Oct  9 10:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 12:21:25] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 10:21 run_atlas
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas       105 Oct  9 10:21 job.xml
[2025-10-09 12:21:25] -rw-r--r--. 2 boincer umatlas 224464855 Oct  9 10:21 EVNT.46376992._000558.pool.root.1
[2025-10-09 12:21:25] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 10:21 start_atlas.sh
[2025-10-09 12:21:25] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 10:21 shared
[2025-10-09 12:21:25] -rw-r--r--. 2 boincer umatlas    565610 Oct  9 10:21 input.tar.gz
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas         0 Oct  9 10:21 boinc_lockfile
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas      2560 Oct  9 10:21 pandaJob.out
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas    975462 Oct  9 10:22 agis_schedconf.cvmfs.json
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas   1560401 Oct  9 10:22 agis_ddmendpoints.agis.ALL.json
[2025-10-09 12:21:25] drwx------. 4 boincer umatlas      4096 Oct  9 10:22 pilot3
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas 194139565 Oct  9 12:18 HITS.46376994._015622.pool.root.1
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas       529 Oct  9 12:18 boinc_task_state.xml
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas      1034 Oct  9 12:20 memory_monitor_summary.json
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas      6944 Oct  9 12:20 init_data.xml
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas    371093 Oct  9 12:20 log.46376994._015622.job.log.tgz.1
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas      7774 Oct  9 12:20 heartbeat.json
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas        95 Oct  9 12:21 pilot_heartbeat.json
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas      4825 Oct  9 12:21 pilotlog.txt
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 12:21 boinc_mmap_file
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas        27 Oct  9 12:21 wrapper_checkpoint.txt
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas    937448 Oct  9 12:21 log.46376994._015622.job.log.1
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas       357 Oct  9 12:21 output.list
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas       620 Oct  9 12:21 runtime_log
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas   1331200 Oct  9 12:21 result.tar.gz
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas       649 Oct  9 12:21 tXoNDmdYqO8n9Rq4apOajLDm4fhM0noT9bVof3QYDmaBBMDmfLAgLn.diag
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas      8698 Oct  9 12:21 runtime_log.err
[2025-10-09 12:21:25] -rw-r--r--. 1 boincer umatlas     20966 Oct  9 12:21 stderr.txt
[2025-10-09 12:21:25] HITS file was successfully produced:
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas 194139565 Oct  9 12:18 shared/HITS.pool.root.1
[2025-10-09 12:21:25]  *** Contents of shared directory: ***
[2025-10-09 12:21:25] total 410672
[2025-10-09 12:21:25] -rw-r--r--. 2 boincer umatlas 224464855 Oct  9 10:21 ATLAS.root_0
[2025-10-09 12:21:25] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 10:21 start_atlas.sh
[2025-10-09 12:21:25] -rw-r--r--. 2 boincer umatlas    565610 Oct  9 10:21 input.tar.gz
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas 194139565 Oct  9 12:18 HITS.pool.root.1
[2025-10-09 12:21:25] -rw-------. 1 boincer umatlas   1331200 Oct  9 12:21 result.tar.gz
12:21:27 (3915113): run_atlas exited; CPU time 32891.703541
12:21:27 (3915113): called boinc_finish(0)

</stderr_txt>
]]>

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