Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:21:59 (16776): wrapper (7.7.26015): starting
10:21:59 (16776): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 10:21:59] Arguments: --nthreads 8
[2025-10-09 10:21:59] Threads: 8
[2025-10-09 10:21:59] Checking for CVMFS
[2025-10-09 10:21:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 10:21:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 10:21:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 10:22:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 10:22:00] 2.11.2.0 2781 2603 66200 151513 1 57 20192126 20275201 1 130560 0 930891 99.982 91193 40226 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 10:22:00] CVMFS is ok
[2025-10-09 10:22:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 10:22:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 10:22:00] Further information can be found at the LHC@home message board.
[2025-10-09 10:22:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 10:22:00] Checking for apptainer binary...
[2025-10-09 10:22:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 10:22:00] Running /usr/bin/apptainer --version
[2025-10-09 10:22:00] apptainer version 1.3.2-1.el7
[2025-10-09 10:22:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 10:22:01] c-115-16.aglt2.org
[2025-10-09 10:22:01] apptainer works
[2025-10-09 10:22:01] Set ATHENA_PROC_NUMBER=8
[2025-10-09 10:22:01] Set ATHENA_CORE_NUMBER=8
[2025-10-09 10:22:01] Starting ATLAS job with PandaID=6835800939
[2025-10-09 10:22:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 12:15:34]  *** The last 200 lines of the pilot log: ***
[2025-10-09 12:15:34] 2025-10-09 16:14:53,869 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 12:15:34] 2025-10-09 16:14:53,870 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 12:15:34] 2025-10-09 16:14:53,870 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 12:15:34] 2025-10-09 16:14:53,874 | INFO     | fitting pss+swap vs Time
[2025-10-09 12:15:34] 2025-10-09 16:14:53,874 | INFO     | sum of square deviations: 424045160.0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,875 | INFO     | sum of deviations: 15830877074.999996
[2025-10-09 12:15:34] 2025-10-09 16:14:53,875 | INFO     | mean x: 1760023123.0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,875 | INFO     | mean y: 2749527.4684684686
[2025-10-09 12:15:34] 2025-10-09 16:14:53,875 | INFO     | -- intersect: -65704190057.38754
[2025-10-09 12:15:34] 2025-10-09 16:14:53,875 | INFO     | intersect: -65704190057.38754
[2025-10-09 12:15:34] 2025-10-09 16:14:53,876 | INFO     | chi2: 2.163270469852704
[2025-10-09 12:15:34] 2025-10-09 16:14:53,876 | INFO     | sum of square deviations: 369281342.5
[2025-10-09 12:15:34] 2025-10-09 16:14:53,877 | INFO     | sum of deviations: 22761028758.999996
[2025-10-09 12:15:34] 2025-10-09 16:14:53,877 | INFO     | mean x: 1760022970.5
[2025-10-09 12:15:34] 2025-10-09 16:14:53,877 | INFO     | mean y: 2768007.037735849
[2025-10-09 12:15:34] 2025-10-09 16:14:53,877 | INFO     | -- intersect: -108478026546.10463
[2025-10-09 12:15:34] 2025-10-09 16:14:53,877 | INFO     | intersect: -108478026546.10463
[2025-10-09 12:15:34] 2025-10-09 16:14:53,877 | INFO     | chi2: 1.4310861852849357
[2025-10-09 12:15:34] 2025-10-09 16:14:53,877 | INFO     | current chi2=1.4310861852849357 (change=33.84617387291486 %)
[2025-10-09 12:15:34] 2025-10-09 16:14:53,878 | INFO     | sum of square deviations: 319447850.0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,878 | INFO     | sum of deviations: 21481614698.0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,878 | INFO     | mean x: 1760022818.0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,878 | INFO     | mean y: 2764088.910891089
[2025-10-09 12:15:34] 2025-10-09 16:14:53,879 | INFO     | -- intersect: -118351865738.66248
[2025-10-09 12:15:34] 2025-10-09 16:14:53,879 | INFO     | intersect: -118351865738.66248
[2025-10-09 12:15:34] 2025-10-09 16:14:53,879 | INFO     | chi2: 1.4314387230394918
[2025-10-09 12:15:34] 2025-10-09 16:14:53,879 | INFO     | current chi2=1.4314387230394918 (change=-0.024634278367094576 %)
[2025-10-09 12:15:34] 2025-10-09 16:14:53,879 | INFO     | right removable region: 100
[2025-10-09 12:15:34] 2025-10-09 16:14:53,879 | INFO     | sum of square deviations: 369281342.5
[2025-10-09 12:15:34] 2025-10-09 16:14:53,880 | INFO     | sum of deviations: -3418187155.0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,880 | INFO     | mean x: 1760023275.5
[2025-10-09 12:15:34] 2025-10-09 16:14:53,880 | INFO     | mean y: 2802183.603773585
[2025-10-09 12:15:34] 2025-10-09 16:14:53,880 | INFO     | -- intersect: 16294145017.462557
[2025-10-09 12:15:34] 2025-10-09 16:14:53,880 | INFO     | intersect: 16294145017.462557
[2025-10-09 12:15:34] 2025-10-09 16:14:53,881 | INFO     | chi2: 0.7776197509984099
[2025-10-09 12:15:34] 2025-10-09 16:14:53,881 | INFO     | current chi2=0.7776197509984099 (change=64.05351240932174 %)
[2025-10-09 12:15:34] 2025-10-09 16:14:53,881 | INFO     | sum of square deviations: 319447850.0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,882 | INFO     | sum of deviations: -5232307208.0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,882 | INFO     | mean x: 1760023428.0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,882 | INFO     | mean y: 2807601.9405940594
[2025-10-09 12:15:34] 2025-10-09 16:14:53,882 | INFO     | -- intersect: 28830621808.77676
[2025-10-09 12:15:34] 2025-10-09 16:14:53,882 | INFO     | intersect: 28830621808.77676
[2025-10-09 12:15:34] 2025-10-09 16:14:53,882 | INFO     | chi2: 0.7601998552422584
[2025-10-09 12:15:34] 2025-10-09 16:14:53,882 | INFO     | current chi2=0.7601998552422584 (change=2.2401560317604456 %)
[2025-10-09 12:15:34] 2025-10-09 16:14:53,883 | INFO     | left removable region: 20
[2025-10-09 12:15:34] 2025-10-09 16:14:53,883 | INFO     | sum of square deviations: 158737860.0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,883 | INFO     | sum of deviations: 867290954.5
[2025-10-09 12:15:34] 2025-10-09 16:14:53,883 | INFO     | mean x: 1760023397.5
[2025-10-09 12:15:34] 2025-10-09 16:14:53,884 | INFO     | mean y: 2833762.1625
[2025-10-09 12:15:34] 2025-10-09 16:14:53,884 | INFO     | -- intersect: -9613349625.720566
[2025-10-09 12:15:34] 2025-10-09 16:14:53,884 | INFO     | intersect: -9613349625.720566
[2025-10-09 12:15:34] 2025-10-09 16:14:53,884 | INFO     | chi2: 0.00023956331557337254
[2025-10-09 12:15:34] 2025-10-09 16:14:53,884 | INFO     | -- intersect: -9613349625.720566
[2025-10-09 12:15:34] 2025-10-09 16:14:53,884 | INFO     | current memory leak: 5.46 B/s (using 80 data points, chi2=0.00)
[2025-10-09 12:15:34] 2025-10-09 16:14:53,885 | INFO     | could have reported an average CPU frequency of 2088 MHz (7 samples)
[2025-10-09 12:15:34] 2025-10-09 16:14:53,885 | INFO     | ..............................
[2025-10-09 12:15:34] 2025-10-09 16:14:53,885 | INFO     | . Timing measurements:
[2025-10-09 12:15:34] 2025-10-09 16:14:53,885 | INFO     | . get job = 0 s
[2025-10-09 12:15:34] 2025-10-09 16:14:53,885 | INFO     | . initial setup = 2 s
[2025-10-09 12:15:34] 2025-10-09 16:14:53,885 | INFO     | . payload setup = 8 s
[2025-10-09 12:15:34] 2025-10-09 16:14:53,886 | INFO     | . stage-in = 0 s
[2025-10-09 12:15:34] 2025-10-09 16:14:53,886 | INFO     | . payload execution = 6717 s
[2025-10-09 12:15:34] 2025-10-09 16:14:53,886 | INFO     | . stage-out = 0 s
[2025-10-09 12:15:34] 2025-10-09 16:14:53,886 | INFO     | . log creation = 0 s
[2025-10-09 12:15:34] 2025-10-09 16:14:53,886 | INFO     | ..............................
[2025-10-09 12:15:34] 2025-10-09 16:14:53,979 | INFO     | 
[2025-10-09 12:15:34] 2025-10-09 16:14:53,979 | INFO     | job summary report
[2025-10-09 12:15:34] 2025-10-09 16:14:53,980 | INFO     | --------------------------------------------------
[2025-10-09 12:15:34] 2025-10-09 16:14:53,980 | INFO     | PanDA job id: 6835800939
[2025-10-09 12:15:34] 2025-10-09 16:14:53,980 | INFO     | task id: 46676269
[2025-10-09 12:15:34] 2025-10-09 16:14:53,980 | INFO     | errors: (none)
[2025-10-09 12:15:34] 2025-10-09 16:14:53,980 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 12:15:34] 2025-10-09 16:14:53,980 | INFO     | pilot state: finished 
[2025-10-09 12:15:34] 2025-10-09 16:14:53,981 | INFO     | transexitcode: 0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,981 | INFO     | exeerrorcode: 0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,981 | INFO     | exeerrordiag: 
[2025-10-09 12:15:34] 2025-10-09 16:14:53,981 | INFO     | exitcode: 0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,981 | INFO     | exitmsg: OK
[2025-10-09 12:15:34] 2025-10-09 16:14:53,981 | INFO     | cpuconsumptiontime: 50169 s
[2025-10-09 12:15:34] 2025-10-09 16:14:53,982 | INFO     | nevents: 400
[2025-10-09 12:15:34] 2025-10-09 16:14:53,982 | INFO     | neventsw: 0
[2025-10-09 12:15:34] 2025-10-09 16:14:53,982 | INFO     | pid: 28034
[2025-10-09 12:15:34] 2025-10-09 16:14:53,982 | INFO     | pgrp: 28034
[2025-10-09 12:15:34] 2025-10-09 16:14:53,982 | INFO     | corecount: 8
[2025-10-09 12:15:34] 2025-10-09 16:14:53,982 | INFO     | event service: False
[2025-10-09 12:15:34] 2025-10-09 16:14:53,983 | INFO     | sizes: {0: 2348022, 1: 2348878, 6: 2349140, 12: 2349168, 6729: 2376274, 6731: 2385272, 6733: 2385456, 6739: 2385650}
[2025-10-09 12:15:34] 2025-10-09 16:14:53,983 | INFO     | --------------------------------------------------
[2025-10-09 12:15:34] 2025-10-09 16:14:53,983 | INFO     | 
[2025-10-09 12:15:34] 2025-10-09 16:14:53,983 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-09 12:15:34] 2025-10-09 16:14:54,010 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,010 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,011 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,011 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,011 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,011 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,011 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,012 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,012 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,012 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,012 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,012 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,012 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 12:15:34] 2025-10-09 16:14:54,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,014 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 12:15:34] 2025-10-09 16:14:54,014 | INFO     | job 6835800939 has completed (purged errors)
[2025-10-09 12:15:34] 2025-10-09 16:14:54,014 | INFO     | overall cleanup function is called
[2025-10-09 12:15:34] 2025-10-09 16:14:55,022 | INFO     | --- collectZombieJob: --- 10, [28034]
[2025-10-09 12:15:34] 2025-10-09 16:14:55,023 | INFO     | zombie collector waiting for pid 28034
[2025-10-09 12:15:34] 2025-10-09 16:14:55,023 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 12:15:34] 2025-10-09 16:14:55,023 | INFO     | collected zombie processes
[2025-10-09 12:15:34] 2025-10-09 16:14:55,023 | INFO     | will attempt to kill all subprocesses of pid=28034
[2025-10-09 12:15:34] 2025-10-09 16:14:55,105 | INFO     | process IDs to be killed: [28034] (in reverse order)
[2025-10-09 12:15:34] 2025-10-09 16:14:55,159 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 12:15:34] 2025-10-09 16:14:55,160 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 12:15:34] 2025-10-09 16:14:55,164 | INFO     | did not find any defunct processes belonging to 28034
[2025-10-09 12:15:34] 2025-10-09 16:14:55,167 | INFO     | did not find any defunct processes belonging to 28034
[2025-10-09 12:15:34] 2025-10-09 16:14:55,168 | INFO     | ready for new job
[2025-10-09 12:15:34] 2025-10-09 16:14:55,168 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 12:15:34] 2025-10-09 16:14:55,169 | INFO     | ***************************************
[2025-10-09 12:15:34] 2025-10-09 16:14:55,169 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-09 12:15:34] 2025-10-09 16:14:55,169 | INFO     | ***************************************
[2025-10-09 12:15:34] 2025-10-09 16:14:55,170 | INFO     | 
[2025-10-09 12:15:34] 2025-10-09 16:14:55,170 | INFO     | architecture information:
[2025-10-09 12:15:34] 2025-10-09 16:14:55,171 | INFO     | executing command: cat /etc/os-release
[2025-10-09 12:15:34] 2025-10-09 16:14:55,189 | INFO     | cat /etc/os-release:
[2025-10-09 12:15:34] NAME="CentOS Linux"
[2025-10-09 12:15:34] VERSION="7 (Core)"
[2025-10-09 12:15:34] ID="centos"
[2025-10-09 12:15:34] ID_LIKE="rhel fedora"
[2025-10-09 12:15:34] VERSION_ID="7"
[2025-10-09 12:15:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 12:15:34] ANSI_COLOR="0;31"
[2025-10-09 12:15:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 12:15:34] HOME_URL="https://www.centos.org/"
[2025-10-09 12:15:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 12:15:34] 
[2025-10-09 12:15:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 12:15:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 12:15:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 12:15:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 12:15:34] 
[2025-10-09 12:15:34] 2025-10-09 16:14:55,189 | INFO     | ***************************************
[2025-10-09 12:15:34] 2025-10-09 16:14:55,691 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-09 12:15:34] 2025-10-09 16:14:55,713 | INFO     | sufficient remaining disk space (18581815296 B)
[2025-10-09 12:15:34] 2025-10-09 16:14:55,714 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 12:15:34] 2025-10-09 16:14:55,714 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 12:15:34] 2025-10-09 16:14:55,715 | INFO     | update_server=False
[2025-10-09 12:15:34] 2025-10-09 16:14:55,715 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 12:15:34] 2025-10-09 16:14:55,715 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 12:15:34] 2025-10-09 16:14:55,802 | INFO     | all job control threads have been joined
[2025-10-09 12:15:34] 2025-10-09 16:14:56,286 | INFO     | all data control threads have been joined
[2025-10-09 12:15:34] 2025-10-09 16:14:56,596 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 12:15:34] 2025-10-09 16:14:56,597 | INFO     | aborting loop
[2025-10-09 12:15:34] 2025-10-09 16:14:56,630 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 12:15:34] 2025-10-09 16:14:56,721 | INFO     | [job] retrieve thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:56,721 | INFO     | [job] queue monitor thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:56,807 | INFO     | [job] control thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:56,820 | INFO     | all payload control threads have been joined
[2025-10-09 12:15:34] 2025-10-09 16:14:56,881 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:57,292 | INFO     | [payload] failed_post thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:57,293 | INFO     | [data] control thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:57,322 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:57,602 | INFO     | [job] job monitor thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:57,825 | INFO     | [payload] control thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:57,831 | INFO     | [data] copytool_in thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:57,844 | INFO     | [job] validate thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:58,161 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:58,232 | INFO     | [payload] validate_post thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:14:58,534 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 12:15:34] 2025-10-09 16:14:58,635 | INFO     | [data] copytool_out thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:15:02,540 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:15:05,844 | INFO     | job.realtimelogging is not enabled
[2025-10-09 12:15:34] 2025-10-09 16:15:06,849 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 12:15:34] 2025-10-09 16:15:26,284 | INFO     | PID=20992 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 12:15:34] 2025-10-09 16:15:26,284 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 12:15:34] 2025-10-09 16:15:26,284 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 12:15:34] 2025-10-09 16:15:26,284 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 12:15:34] 2025-10-09 16:15:28,611 | INFO     | [monitor] cgroup control has ended
[2025-10-09 12:15:34] 2025-10-09 16:15:29,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139758479841088)>', '<ExcThread(monitor, started 139757220783872)>']
[2025-10-09 12:15:34] 2025-10-09 16:15:30,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 12:15:34] 2025-10-09 16:15:30,300 | INFO     | [monitor] control thread has ended
[2025-10-09 12:15:34] 2025-10-09 16:15:34,640 | INFO     | all workflow threads have been joined
[2025-10-09 12:15:34] 2025-10-09 16:15:34,643 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 12:15:34] 2025-10-09 16:15:34,643 | INFO     | traces error code: 0
[2025-10-09 12:15:34] 2025-10-09 16:15:34,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 12:15:34] 2025-10-09 16:15:34,736 [wrapper] ==== pilot stdout END ====
[2025-10-09 12:15:34] 2025-10-09 16:15:34,742 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 12:15:34] 2025-10-09 16:15:34,746 [wrapper] pilotpid: 20992
[2025-10-09 12:15:34] 2025-10-09 16:15:34,751 [wrapper] Pilot exit status: 0
[2025-10-09 12:15:34] 2025-10-09 16:15:34,769 [wrapper] pandaids: 6835800939
[2025-10-09 12:15:34] 2025-10-09 16:15:34,812 [wrapper] cleanup supervisor_pilot  2550 20993
[2025-10-09 12:15:34] 2025-10-09 16:15:34,817 [wrapper] Test setup, not cleaning
[2025-10-09 12:15:34] 2025-10-09 16:15:34,822 [wrapper] apfmon messages muted
[2025-10-09 12:15:34] 2025-10-09 16:15:34,827 [wrapper] ==== wrapper stdout END ====
[2025-10-09 12:15:34] 2025-10-09 16:15:34,832 [wrapper] ==== wrapper stderr END ====
[2025-10-09 12:15:34]  *** Error codes and diagnostics ***
[2025-10-09 12:15:34]     "exeErrorCode": 0,
[2025-10-09 12:15:34]     "exeErrorDiag": "",
[2025-10-09 12:15:34]     "pilotErrorCode": 0,
[2025-10-09 12:15:34]     "pilotErrorDiag": "",
[2025-10-09 12:15:34]  *** Listing of results directory ***
[2025-10-09 12:15:34] total 420792
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas    552446 Oct  8 02:43 pilot3.tar.gz
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas      5112 Oct  8 02:57 queuedata.json
[2025-10-09 12:15:34] -rwx------ 1 boincer umatlas     36292 Oct  8 02:58 runpilot2-wrapper.sh
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas       100 Oct  9 10:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 12:15:34] -rwxr-xr-x 1 boincer umatlas      7986 Oct  9 10:21 run_atlas
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas       105 Oct  9 10:21 job.xml
[2025-10-09 12:15:34] -rw-r--r-- 2 boincer umatlas 220724969 Oct  9 10:21 EVNT.46676267._000049.pool.root.1
[2025-10-09 12:15:34] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 10:21 start_atlas.sh
[2025-10-09 12:15:34] drwxrwx--x 2 boincer umatlas      4096 Oct  9 10:21 shared
[2025-10-09 12:15:34] -rw-r--r-- 2 boincer umatlas    565606 Oct  9 10:21 input.tar.gz
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas         0 Oct  9 10:21 boinc_lockfile
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas      2547 Oct  9 10:22 pandaJob.out
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas    975462 Oct  9 10:22 agis_schedconf.cvmfs.json
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas   1560401 Oct  9 10:22 agis_ddmendpoints.agis.ALL.json
[2025-10-09 12:15:34] drwx------ 4 boincer umatlas      4096 Oct  9 10:22 pilot3
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas      5909 Oct  9 12:12 init_data.xml
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas 203684749 Oct  9 12:14 HITS.46676269._001206.pool.root.1
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas       530 Oct  9 12:14 boinc_task_state.xml
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas      1049 Oct  9 12:14 memory_monitor_summary.json
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas    347497 Oct  9 12:14 log.46676269._001206.job.log.tgz.1
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas        95 Oct  9 12:14 pilot_heartbeat.json
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas      7841 Oct  9 12:14 heartbeat.json
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas        27 Oct  9 12:15 wrapper_checkpoint.txt
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas      8192 Oct  9 12:15 boinc_mmap_file
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas      4818 Oct  9 12:15 pilotlog.txt
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas    951975 Oct  9 12:15 log.46676269._001206.job.log.1
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas       357 Oct  9 12:15 output.list
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas       620 Oct  9 12:15 runtime_log
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas   1320960 Oct  9 12:15 result.tar.gz
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas      8703 Oct  9 12:15 runtime_log.err
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas       658 Oct  9 12:15 Ob5KDmmIdQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrUXNDmNBQAdm.diag
[2025-10-09 12:15:34] -rw-r--r-- 1 boincer umatlas     20841 Oct  9 12:15 stderr.txt
[2025-10-09 12:15:34] HITS file was successfully produced:
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas 203684749 Oct  9 12:14 shared/HITS.pool.root.1
[2025-10-09 12:15:34]  *** Contents of shared directory: ***
[2025-10-09 12:15:34] total 416328
[2025-10-09 12:15:34] -rw-r--r-- 2 boincer umatlas 220724969 Oct  9 10:21 ATLAS.root_0
[2025-10-09 12:15:34] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 10:21 start_atlas.sh
[2025-10-09 12:15:34] -rw-r--r-- 2 boincer umatlas    565606 Oct  9 10:21 input.tar.gz
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas 203684749 Oct  9 12:14 HITS.pool.root.1
[2025-10-09 12:15:34] -rw------- 1 boincer umatlas   1320960 Oct  9 12:15 result.tar.gz
12:15:36 (16776): run_atlas exited; CPU time 50187.113855
12:15:36 (16776): called boinc_finish(0)

</stderr_txt>
]]>

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