Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:29:41 (1035999): wrapper (7.7.26015): starting
17:29:41 (1035999): wrapper: running run_atlas (--nthreads 3)
[2025-10-09 17:29:41] Arguments: --nthreads 3
[2025-10-09 17:29:41] Threads: 3
[2025-10-09 17:29:41] Checking for CVMFS
[2025-10-09 17:29:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 17:29:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 17:29:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 17:29:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 17:29:42] 2.9.2.0 1010855 81 48984 151513 2 188 23872483 36864000 0 130560 0 65645 99.974 2835 807 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-09 17:29:42] CVMFS is ok
[2025-10-09 17:29:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 17:29:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 17:29:42] Further information can be found at the LHC@home message board.
[2025-10-09 17:29:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 17:29:42] Checking for apptainer binary...
[2025-10-09 17:29:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 17:29:42] Running /usr/bin/apptainer --version
[2025-10-09 17:29:42] apptainer version 1.4.1-1.1
[2025-10-09 17:29:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 17:29:42] magicA246b
[2025-10-09 17:29:42] apptainer works
[2025-10-09 17:29:42] Set ATHENA_PROC_NUMBER=3
[2025-10-09 17:29:42] Set ATHENA_CORE_NUMBER=3
[2025-10-09 17:29:42] Starting ATLAS job with PandaID=6837329435
[2025-10-09 17:29:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 18:54:00]  *** The last 200 lines of the pilot log: ***
[2025-10-09 18:54:00] 2025-10-09 16:53:40,093 | INFO     | collected zombie processes
[2025-10-09 18:54:00] 2025-10-09 16:53:40,093 | INFO     | will attempt to kill all subprocesses of pid=1046143
[2025-10-09 18:54:00] 2025-10-09 16:53:40,134 | INFO     | process IDs to be killed: [1046143] (in reverse order)
[2025-10-09 18:54:00] 2025-10-09 16:53:40,158 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 18:54:00] 2025-10-09 16:53:40,158 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 18:54:00] 2025-10-09 16:53:40,159 | INFO     | did not find any defunct processes belonging to 1046143
[2025-10-09 18:54:00] 2025-10-09 16:53:40,160 | INFO     | did not find any defunct processes belonging to 1046143
[2025-10-09 18:54:00] 2025-10-09 16:53:40,160 | INFO     | ready for new job
[2025-10-09 18:54:00] 2025-10-09 16:53:40,160 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 18:54:00] 2025-10-09 16:53:40,161 | INFO     | ***************************************
[2025-10-09 18:54:00] 2025-10-09 16:53:40,161 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 18:54:00] 2025-10-09 16:53:40,161 | INFO     | ***************************************
[2025-10-09 18:54:00] 2025-10-09 16:53:40,161 | INFO     | 
[2025-10-09 18:54:00] 2025-10-09 16:53:40,161 | INFO     | architecture information:
[2025-10-09 18:54:00] 2025-10-09 16:53:40,162 | INFO     | executing command: cat /etc/os-release
[2025-10-09 18:54:00] 2025-10-09 16:53:40,170 | INFO     | cat /etc/os-release:
[2025-10-09 18:54:00] NAME="CentOS Linux"
[2025-10-09 18:54:00] VERSION="7 (Core)"
[2025-10-09 18:54:00] ID="centos"
[2025-10-09 18:54:00] ID_LIKE="rhel fedora"
[2025-10-09 18:54:00] VERSION_ID="7"
[2025-10-09 18:54:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 18:54:00] ANSI_COLOR="0;31"
[2025-10-09 18:54:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 18:54:00] HOME_URL="https://www.centos.org/"
[2025-10-09 18:54:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 18:54:00] 
[2025-10-09 18:54:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 18:54:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 18:54:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 18:54:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 18:54:00] 
[2025-10-09 18:54:00] 2025-10-09 16:53:40,170 | INFO     | ***************************************
[2025-10-09 18:54:00] 2025-10-09 16:53:40,673 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-09 18:54:00] 2025-10-09 16:53:40,685 | INFO     | sufficient remaining disk space (377833390080 B)
[2025-10-09 18:54:00] 2025-10-09 16:53:40,686 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 18:54:00] 2025-10-09 16:53:40,686 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 18:54:00] 2025-10-09 16:53:40,686 | INFO     | update_server=False
[2025-10-09 18:54:00] 2025-10-09 16:53:40,686 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 18:54:00] 2025-10-09 16:53:40,686 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-09 18:54:00] 2025-10-09 16:53:40,686 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 18:54:00] 2025-10-09 16:53:40,686 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 18:54:00] 2025-10-09 16:53:40,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 18:54:00] 2025-10-09 16:53:40,686 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 18:54:00] 2025-10-09 16:53:40,687 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 18:54:00] 2025-10-09 16:53:40,860 | INFO     | all payload control threads have been joined
[2025-10-09 18:54:00] 2025-10-09 16:53:41,061 | INFO     | all data control threads have been joined
[2025-10-09 18:54:00] 2025-10-09 16:53:41,123 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 18:54:00] 2025-10-09 16:53:41,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 18:54:00] 2025-10-09 16:53:41,314 | INFO     | aborting loop
[2025-10-09 18:54:00] 2025-10-09 16:53:41,692 | INFO     | [job] retrieve thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:41,692 | INFO     | [job] queue monitor thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:41,692 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:41,855 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:41,866 | INFO     | [payload] control thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:42,067 | INFO     | [data] control thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:42,071 | INFO     | [data] copytool_in thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:42,096 | INFO     | [payload] failed_post thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:42,278 | INFO     | all job control threads have been joined
[2025-10-09 18:54:00] 2025-10-09 16:53:42,319 | INFO     | [job] job monitor thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:42,621 | INFO     | [job] validate thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:42,626 | INFO     | [payload] validate_post thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:42,693 | INFO     | [data] copytool_out thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:42,705 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:42,720 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:43,283 | INFO     | [job] control thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:45,130 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 18:54:00] 2025-10-09 16:53:53,444 | INFO     | [monitor] cgroup control has ended
[2025-10-09 18:54:00] 2025-10-09 16:53:55,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139926684682048)>', '<ExcThread(monitor, started 139926066685696)>']
[2025-10-09 18:54:00] 2025-10-09 16:53:55,765 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 18:54:00] 2025-10-09 16:53:55,765 | INFO     | [monitor] control thread has ended
[2025-10-09 18:54:00] 2025-10-09 16:54:00,358 | INFO     | all workflow threads have been joined
[2025-10-09 18:54:00] 2025-10-09 16:54:00,358 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 18:54:00] 2025-10-09 16:54:00,358 | INFO     | traces error code: 0
[2025-10-09 18:54:00] 2025-10-09 16:54:00,359 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 18:54:00] 2025-10-09 16:54:00,407 [wrapper] ==== pilot stdout END ====
[2025-10-09 18:54:00] 2025-10-09 16:54:00,409 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 18:54:00] 2025-10-09 16:54:00,412 [wrapper] pilotpid: 1039712
[2025-10-09 18:54:00] 2025-10-09 16:54:00,414 [wrapper] Pilot exit status: 0
[2025-10-09 18:54:00] 2025-10-09 16:54:00,421 [wrapper] pandaids: 6837329435
[2025-10-09 18:54:00] 2025-10-09 16:54:00,437 [wrapper] cleanup supervisor_pilot 1058564 1039713
[2025-10-09 18:54:00] 2025-10-09 16:54:00,439 [wrapper] Test setup, not cleaning
[2025-10-09 18:54:00] 2025-10-09 16:54:00,441 [wrapper] apfmon messages muted
[2025-10-09 18:54:00] 2025-10-09 16:54:00,443 [wrapper] ==== wrapper stdout END ====
[2025-10-09 18:54:00] 2025-10-09 16:54:00,446 [wrapper] ==== wrapper stderr END ====
[2025-10-09 18:54:00]  *** Error codes and diagnostics ***
[2025-10-09 18:54:00]     "exeErrorCode": 0,
[2025-10-09 18:54:00]     "exeErrorDiag": "",
[2025-10-09 18:54:00]     "pilotErrorCode": 0,
[2025-10-09 18:54:00]     "pilotErrorDiag": "",
[2025-10-09 18:54:00]  *** Listing of results directory ***
[2025-10-09 18:54:00] total 418020
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc      5112 Oct  9 12:51 queuedata.json
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc    557409 Oct  9 12:52 pilot3.tar.gz
[2025-10-09 18:54:00] -rwx------ 1 boinc boinc     36292 Oct  9 12:54 runpilot2-wrapper.sh
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc       100 Oct  9 17:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 18:54:00] -rwxr-xr-x 1 boinc boinc      7986 Oct  9 17:29 run_atlas
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc       105 Oct  9 17:29 job.xml
[2025-10-09 18:54:00] -rw-r--r-- 2 boinc boinc 221482576 Oct  9 17:29 EVNT.46676267._000589.pool.root.1
[2025-10-09 18:54:00] -rw-r--r-- 2 boinc boinc    569682 Oct  9 17:29 input.tar.gz
[2025-10-09 18:54:00] -rw-r--r-- 2 boinc boinc     15120 Oct  9 17:29 start_atlas.sh
[2025-10-09 18:54:00] drwxrwx--x 2 boinc boinc      4096 Oct  9 17:29 shared
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc         0 Oct  9 17:29 boinc_setup_complete
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc      6448 Oct  9 17:29 init_data.xml
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc         0 Oct  9 17:29 boinc_lockfile
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc      2550 Oct  9 17:29 pandaJob.out
[2025-10-09 18:54:00] -rw------- 1 boinc boinc    975462 Oct  9 17:29 agis_schedconf.cvmfs.json
[2025-10-09 18:54:00] -rw------- 1 boinc boinc   1560401 Oct  9 17:29 agis_ddmendpoints.agis.ALL.json
[2025-10-09 18:54:00] drwx------ 5 boinc boinc      4096 Oct  9 17:29 pilot3
[2025-10-09 18:54:00] -rw------- 1 boinc boinc 200671774 Oct  9 18:53 HITS.46676269._014373.pool.root.1
[2025-10-09 18:54:00] -rw------- 1 boinc boinc        95 Oct  9 18:53 pilot_heartbeat.json
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc       529 Oct  9 18:53 boinc_task_state.xml
[2025-10-09 18:54:00] -rw------- 1 boinc boinc      1019 Oct  9 18:53 memory_monitor_summary.json
[2025-10-09 18:54:00] -rw------- 1 boinc boinc    265673 Oct  9 18:53 log.46676269._014373.job.log.tgz.1
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc        27 Oct  9 18:53 wrapper_checkpoint.txt
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc      8192 Oct  9 18:53 boinc_mmap_file
[2025-10-09 18:54:00] -rw------- 1 boinc boinc      7769 Oct  9 18:53 heartbeat.json
[2025-10-09 18:54:00] -rw------- 1 boinc boinc      4556 Oct  9 18:54 pilotlog.txt
[2025-10-09 18:54:00] -rw------- 1 boinc boinc    737319 Oct  9 18:54 log.46676269._014373.job.log.1
[2025-10-09 18:54:00] -rw------- 1 boinc boinc       357 Oct  9 18:54 output.list
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc       620 Oct  9 18:54 runtime_log
[2025-10-09 18:54:00] -rw------- 1 boinc boinc   1024000 Oct  9 18:54 result.tar.gz
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc      8797 Oct  9 18:54 runtime_log.err
[2025-10-09 18:54:00] -rw------- 1 boinc boinc       662 Oct  9 18:54 FrkNDmeT3Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZLZNDmtbHhKo.diag
[2025-10-09 18:54:00] -rw-r--r-- 1 boinc boinc     10202 Oct  9 18:54 stderr.txt
[2025-10-09 18:54:00] HITS file was successfully produced:
[2025-10-09 18:54:00] -rw------- 1 boinc boinc 200671774 Oct  9 18:53 shared/HITS.pool.root.1
[2025-10-09 18:54:00]  *** Contents of shared directory: ***
[2025-10-09 18:54:00] total 413848
[2025-10-09 18:54:00] -rw-r--r-- 2 boinc boinc 221482576 Oct  9 17:29 ATLAS.root_0
[2025-10-09 18:54:00] -rw-r--r-- 2 boinc boinc    569682 Oct  9 17:29 input.tar.gz
[2025-10-09 18:54:00] -rw-r--r-- 2 boinc boinc     15120 Oct  9 17:29 start_atlas.sh
[2025-10-09 18:54:00] -rw------- 1 boinc boinc 200671774 Oct  9 18:53 HITS.pool.root.1
[2025-10-09 18:54:00] -rw------- 1 boinc boinc   1024000 Oct  9 18:54 result.tar.gz
18:54:01 (1035999): run_atlas exited; CPU time 14440.213753
18:54:01 (1035999): called boinc_finish(0)

</stderr_txt>
]]>

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