Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
10:31:43 (1048391): wrapper (7.7.26015): starting
10:31:43 (1048391): wrapper: running run_atlas (--nthreads 4)
[2025-10-09 10:31:43] Arguments: --nthreads 4
[2025-10-09 10:31:43] Threads: 4
[2025-10-09 10:31:43] Checking for CVMFS
[2025-10-09 10:31:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 10:31:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 10:31:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 10:31:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 10:31:48] 2.11.0.0 1048591 0 25116 151513 3 1 2630447 4096001 0 130560 0 0 0.000 1291 1116 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-09 10:31:48] CVMFS is ok
[2025-10-09 10:31:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 10:31:48] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-09 10:31:48] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-09 10:31:48] Further information can be found at the LHC@home message board.
[2025-10-09 10:31:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 10:31:48] Checking for apptainer binary...
[2025-10-09 10:31:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 10:31:48] Running /usr/bin/apptainer --version
[2025-10-09 10:31:48] apptainer version 1.4.2-1.fc42
[2025-10-09 10:31:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 10:31:48] fedora
[2025-10-09 10:31:48] apptainer works
[2025-10-09 10:31:48] Set ATHENA_PROC_NUMBER=4
[2025-10-09 10:31:48] Set ATHENA_CORE_NUMBER=4
[2025-10-09 10:31:48] Starting ATLAS job with PandaID=6837333274
[2025-10-09 10:31:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 14:24:38]  *** The last 200 lines of the pilot log: ***
[2025-10-09 14:24:38] 2025-10-09 18:24:06,820 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-09 14:24:38] 2025-10-09 18:24:06,821 | INFO     | found 2 cores (2 cores per socket, 1 socket) HT, CPU MHz: 3108.924
[2025-10-09 14:24:38] 2025-10-09 18:24:06,821 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6837333274/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 14:24:38] 2025-10-09 18:24:06,822 | INFO     | extracted standard info from prmon json
[2025-10-09 14:24:38] 2025-10-09 18:24:06,822 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 14:24:38] 2025-10-09 18:24:06,822 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 14:24:38] 2025-10-09 18:24:06,822 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 14:24:38] 2025-10-09 18:24:06,822 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 14:24:38] 2025-10-09 18:24:06,824 | INFO     | fitting pss+swap vs Time
[2025-10-09 14:24:38] 2025-10-09 18:24:06,825 | INFO     | sum of square deviations: 3675146117.0
[2025-10-09 14:24:38] 2025-10-09 18:24:06,825 | INFO     | sum of deviations: -102689066642.00002
[2025-10-09 14:24:38] 2025-10-09 18:24:06,825 | INFO     | mean x: 1760027274.5
[2025-10-09 14:24:38] 2025-10-09 18:24:06,826 | INFO     | mean y: 2624536.798245614
[2025-10-09 14:24:38] 2025-10-09 18:24:06,826 | INFO     | -- intersect: 49180412937.331696
[2025-10-09 14:24:38] 2025-10-09 18:24:06,826 | INFO     | intersect: 49180412937.331696
[2025-10-09 14:24:38] 2025-10-09 18:24:06,826 | INFO     | chi2: 1.924516616236471
[2025-10-09 14:24:38] 2025-10-09 18:24:06,826 | INFO     | sum of square deviations: 3438620752.0
[2025-10-09 14:24:38] 2025-10-09 18:24:06,827 | INFO     | sum of deviations: -93484878938.99998
[2025-10-09 14:24:38] 2025-10-09 18:24:06,827 | INFO     | mean x: 1760027122.0
[2025-10-09 14:24:38] 2025-10-09 18:24:06,827 | INFO     | mean y: 2630472.331838565
[2025-10-09 14:24:38] 2025-10-09 18:24:06,827 | INFO     | -- intersect: 47852025417.6243
[2025-10-09 14:24:38] 2025-10-09 18:24:06,827 | INFO     | intersect: 47852025417.6243
[2025-10-09 14:24:38] 2025-10-09 18:24:06,827 | INFO     | chi2: 1.923095956307587
[2025-10-09 14:24:38] 2025-10-09 18:24:06,827 | INFO     | current chi2=1.923095956307587 (change=0.07381905237390904 %)
[2025-10-09 14:24:38] 2025-10-09 18:24:06,827 | INFO     | right removable region: 222
[2025-10-09 14:24:38] 2025-10-09 18:24:06,827 | INFO     | sum of square deviations: 3438620752.0
[2025-10-09 14:24:38] 2025-10-09 18:24:06,828 | INFO     | sum of deviations: -132649431666.99995
[2025-10-09 14:24:38] 2025-10-09 18:24:06,828 | INFO     | mean x: 1760027427.0
[2025-10-09 14:24:38] 2025-10-09 18:24:06,828 | INFO     | mean y: 2643594.013452915
[2025-10-09 14:24:38] 2025-10-09 18:24:06,828 | INFO     | -- intersect: 67898074567.05442
[2025-10-09 14:24:38] 2025-10-09 18:24:06,828 | INFO     | intersect: 67898074567.05442
[2025-10-09 14:24:38] 2025-10-09 18:24:06,828 | INFO     | chi2: 0.5040722626107014
[2025-10-09 14:24:38] 2025-10-09 18:24:06,828 | INFO     | current chi2=0.5040722626107014 (change=73.8078508463881 %)
[2025-10-09 14:24:38] 2025-10-09 18:24:06,829 | INFO     | sum of square deviations: 3212467674.5
[2025-10-09 14:24:38] 2025-10-09 18:24:06,829 | INFO     | sum of deviations: -129797367090.00002
[2025-10-09 14:24:38] 2025-10-09 18:24:06,829 | INFO     | mean x: 1760027579.5
[2025-10-09 14:24:38] 2025-10-09 18:24:06,829 | INFO     | mean y: 2641668.623853211
[2025-10-09 14:24:38] 2025-10-09 18:24:06,830 | INFO     | -- intersect: 71115246983.92621
[2025-10-09 14:24:38] 2025-10-09 18:24:06,830 | INFO     | intersect: 71115246983.92621
[2025-10-09 14:24:38] 2025-10-09 18:24:06,830 | INFO     | chi2: 0.48042195037464175
[2025-10-09 14:24:38] 2025-10-09 18:24:06,830 | INFO     | current chi2=0.48042195037464175 (change=4.691849560134383 %)
[2025-10-09 14:24:38] 2025-10-09 18:24:06,830 | INFO     | left removable region: 20
[2025-10-09 14:24:38] 2025-10-09 18:24:06,830 | INFO     | sum of square deviations: 2555770710.5
[2025-10-09 14:24:38] 2025-10-09 18:24:06,831 | INFO     | sum of deviations: -112339903878.50002
[2025-10-09 14:24:38] 2025-10-09 18:24:06,831 | INFO     | mean x: 1760027701.5
[2025-10-09 14:24:38] 2025-10-09 18:24:06,831 | INFO     | mean y: 2644890.3415841586
[2025-10-09 14:24:38] 2025-10-09 18:24:06,831 | INFO     | -- intersect: 77365352741.12761
[2025-10-09 14:24:38] 2025-10-09 18:24:06,831 | INFO     | intersect: 77365352741.12761
[2025-10-09 14:24:38] 2025-10-09 18:24:06,831 | INFO     | chi2: 0.43951752730535837
[2025-10-09 14:24:38] 2025-10-09 18:24:06,831 | INFO     | -- intersect: 77365352741.12761
[2025-10-09 14:24:38] 2025-10-09 18:24:06,831 | INFO     | current memory leak: -43.96 B/s (using 202 data points, chi2=0.44)
[2025-10-09 14:24:38] 2025-10-09 18:24:06,831 | INFO     | could have reported an average CPU frequency of 2828 MHz (11 samples)
[2025-10-09 14:24:38] 2025-10-09 18:24:06,831 | INFO     | ..............................
[2025-10-09 14:24:38] 2025-10-09 18:24:06,831 | INFO     | . Timing measurements:
[2025-10-09 14:24:38] 2025-10-09 18:24:06,831 | INFO     | . get job = 0 s
[2025-10-09 14:24:38] 2025-10-09 18:24:06,832 | INFO     | . initial setup = 5 s
[2025-10-09 14:24:38] 2025-10-09 18:24:06,832 | INFO     | . payload setup = 4 s
[2025-10-09 14:24:38] 2025-10-09 18:24:06,832 | INFO     | . stage-in = 0 s
[2025-10-09 14:24:38] 2025-10-09 18:24:06,832 | INFO     | . payload execution = 13881 s
[2025-10-09 14:24:38] 2025-10-09 18:24:06,832 | INFO     | . stage-out = 3 s
[2025-10-09 14:24:38] 2025-10-09 18:24:06,832 | INFO     | . log creation = 0 s
[2025-10-09 14:24:38] 2025-10-09 18:24:06,832 | INFO     | ..............................
[2025-10-09 14:24:38] 2025-10-09 18:24:06,876 | INFO     | 
[2025-10-09 14:24:38] 2025-10-09 18:24:06,876 | INFO     | job summary report
[2025-10-09 14:24:38] 2025-10-09 18:24:06,876 | INFO     | --------------------------------------------------
[2025-10-09 14:24:38] 2025-10-09 18:24:06,876 | INFO     | PanDA job id: 6837333274
[2025-10-09 14:24:38] 2025-10-09 18:24:06,876 | INFO     | task id: 46676269
[2025-10-09 14:24:38] 2025-10-09 18:24:06,876 | INFO     | errors: (none)
[2025-10-09 14:24:38] 2025-10-09 18:24:06,876 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 14:24:38] 2025-10-09 18:24:06,876 | INFO     | pilot state: finished 
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | transexitcode: 0
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | exeerrorcode: 0
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | exeerrordiag: 
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | exitcode: 0
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | exitmsg: OK
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | cpuconsumptiontime: 40297 s
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | nevents: 400
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | neventsw: 0
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | pid: 1058990
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | pgrp: 1058990
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | corecount: 4
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | event service: False
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | sizes: {0: 2348849, 3: 2349111, 11: 2349139, 13889: 2379623, 13893: 2388621, 13896: 2388677, 13905: 2388999}
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | --------------------------------------------------
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | 
[2025-10-09 14:24:38] 2025-10-09 18:24:06,877 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-09 14:24:38] 2025-10-09 18:24:06,889 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,890 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,891 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,891 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 14:24:38] 2025-10-09 18:24:06,891 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,891 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 14:24:38] 2025-10-09 18:24:06,891 | INFO     | job 6837333274 has completed (purged errors)
[2025-10-09 14:24:38] 2025-10-09 18:24:06,891 | INFO     | overall cleanup function is called
[2025-10-09 14:24:38] 2025-10-09 18:24:07,897 | INFO     | --- collectZombieJob: --- 10, [1058990]
[2025-10-09 14:24:38] 2025-10-09 18:24:07,898 | INFO     | zombie collector waiting for pid 1058990
[2025-10-09 14:24:38] 2025-10-09 18:24:07,898 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 14:24:38] 2025-10-09 18:24:07,898 | INFO     | collected zombie processes
[2025-10-09 14:24:38] 2025-10-09 18:24:07,898 | INFO     | will attempt to kill all subprocesses of pid=1058990
[2025-10-09 14:24:38] 2025-10-09 18:24:07,952 | INFO     | process IDs to be killed: [1058990] (in reverse order)
[2025-10-09 14:24:38] 2025-10-09 18:24:07,977 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 14:24:38] 2025-10-09 18:24:07,977 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 14:24:38] 2025-10-09 18:24:07,980 | INFO     | did not find any defunct processes belonging to 1058990
[2025-10-09 14:24:38] 2025-10-09 18:24:07,982 | INFO     | did not find any defunct processes belonging to 1058990
[2025-10-09 14:24:38] 2025-10-09 18:24:07,982 | INFO     | ready for new job
[2025-10-09 14:24:38] 2025-10-09 18:24:07,982 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 14:24:38] 2025-10-09 18:24:07,983 | INFO     | ***************************************
[2025-10-09 14:24:38] 2025-10-09 18:24:07,983 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 14:24:38] 2025-10-09 18:24:07,983 | INFO     | ***************************************
[2025-10-09 14:24:38] 2025-10-09 18:24:07,984 | INFO     | 
[2025-10-09 14:24:38] 2025-10-09 18:24:07,984 | INFO     | architecture information:
[2025-10-09 14:24:38] 2025-10-09 18:24:07,984 | INFO     | executing command: cat /etc/os-release
[2025-10-09 14:24:38] 2025-10-09 18:24:07,993 | INFO     | cat /etc/os-release:
[2025-10-09 14:24:38] NAME="CentOS Linux"
[2025-10-09 14:24:38] VERSION="7 (Core)"
[2025-10-09 14:24:38] ID="centos"
[2025-10-09 14:24:38] ID_LIKE="rhel fedora"
[2025-10-09 14:24:38] VERSION_ID="7"
[2025-10-09 14:24:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 14:24:38] ANSI_COLOR="0;31"
[2025-10-09 14:24:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 14:24:38] HOME_URL="https://www.centos.org/"
[2025-10-09 14:24:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 14:24:38] 
[2025-10-09 14:24:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 14:24:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 14:24:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 14:24:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 14:24:38] 
[2025-10-09 14:24:38] 2025-10-09 18:24:07,993 | INFO     | ***************************************
[2025-10-09 14:24:38] 2025-10-09 18:24:08,496 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-09 14:24:38] 2025-10-09 18:24:08,506 | INFO     | sufficient remaining disk space (340823900160 B)
[2025-10-09 14:24:38] 2025-10-09 18:24:08,506 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 14:24:38] 2025-10-09 18:24:08,506 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 14:24:38] 2025-10-09 18:24:08,507 | INFO     | update_server=False
[2025-10-09 14:24:38] 2025-10-09 18:24:08,507 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 14:24:38] 2025-10-09 18:24:08,507 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 14:24:38] 2025-10-09 18:24:08,507 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 14:24:38] 2025-10-09 18:24:08,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 14:24:38] 2025-10-09 18:24:08,529 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-09 14:24:38] 2025-10-09 18:24:08,530 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-09 14:24:38] 2025-10-09 18:24:08,530 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 14:24:38] 2025-10-09 18:24:08,530 | INFO     | will abort loop
[2025-10-09 14:24:38] 2025-10-09 18:24:08,658 | INFO     | all job control threads have been joined
[2025-10-09 14:24:38] 2025-10-09 18:24:09,155 | INFO     | all data control threads have been joined
[2025-10-09 14:24:38] 2025-10-09 18:24:09,428 | INFO     | all payload control threads have been joined
[2025-10-09 14:24:38] 2025-10-09 18:24:09,512 | INFO     | [job] queue monitor thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:09,512 | INFO     | [job] retrieve thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:09,535 | INFO     | [job] job monitor thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:09,664 | INFO     | [job] control thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:09,780 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:09,893 | INFO     | [payload] failed_post thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:10,160 | INFO     | [data] control thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:10,264 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:10,329 | INFO     | [job] validate thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:10,433 | INFO     | [payload] control thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:10,506 | INFO     | [data] copytool_in thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:10,512 | INFO     | [data] copytool_out thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:10,802 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:11,029 | INFO     | [payload] validate_post thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:12,513 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:19,537 | INFO     | job.realtimelogging is not enabled
[2025-10-09 14:24:38] 2025-10-09 18:24:20,542 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 14:24:38] 2025-10-09 18:24:31,511 | INFO     | [monitor] cgroup control has ended
[2025-10-09 14:24:38] 2025-10-09 18:24:32,597 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139688160954176)>', '<ExcThread(monitor, started 139687805040384)>']
[2025-10-09 14:24:38] 2025-10-09 18:24:37,621 | INFO     | all workflow threads have been joined
[2025-10-09 14:24:38] 2025-10-09 18:24:37,622 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 14:24:38] 2025-10-09 18:24:37,622 | INFO     | traces error code: 0
[2025-10-09 14:24:38] 2025-10-09 18:24:37,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 14:24:38] 2025-10-09 18:24:38,632 | INFO     | PID=1052622 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 14:24:38] 2025-10-09 18:24:38,633 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 14:24:38] 2025-10-09 18:24:38,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 14:24:38] 2025-10-09 18:24:38,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 14:24:38] 2025-10-09 18:24:38,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 14:24:38] 2025-10-09 18:24:38,633 | CRITICAL | thread 'MainThread' is not alive
[2025-10-09 14:24:38] 2025-10-09 18:24:38,633 | INFO     | [monitor] control thread has ended
[2025-10-09 14:24:38] 2025-10-09 18:24:38,708 [wrapper] ==== pilot stdout END ====
[2025-10-09 14:24:38] 2025-10-09 18:24:38,710 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 14:24:38] 2025-10-09 18:24:38,712 [wrapper] pilotpid: 1052622
[2025-10-09 14:24:38] 2025-10-09 18:24:38,713 [wrapper] Pilot exit status: 0
[2025-10-09 14:24:38] 2025-10-09 18:24:38,722 [wrapper] pandaids: 6837333274
[2025-10-09 14:24:38] 2025-10-09 18:24:38,739 [wrapper] cleanup supervisor_pilot 1082858 1052623
[2025-10-09 14:24:38] 2025-10-09 18:24:38,741 [wrapper] Test setup, not cleaning
[2025-10-09 14:24:38] 2025-10-09 18:24:38,744 [wrapper] apfmon messages muted
[2025-10-09 14:24:38] 2025-10-09 18:24:38,746 [wrapper] ==== wrapper stdout END ====
[2025-10-09 14:24:38] 2025-10-09 18:24:38,748 [wrapper] ==== wrapper stderr END ====
[2025-10-09 14:24:38]  *** Error codes and diagnostics ***
[2025-10-09 14:24:38]     "exeErrorCode": 0,
[2025-10-09 14:24:38]     "exeErrorDiag": "",
[2025-10-09 14:24:38]     "pilotErrorCode": 0,
[2025-10-09 14:24:38]     "pilotErrorDiag": "",
[2025-10-09 14:24:38]  *** Listing of results directory ***
[2025-10-09 14:24:38] total 403188
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc    557409 Oct  9 07:10 pilot3.tar.gz
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc      5112 Oct  9 07:18 queuedata.json
[2025-10-09 14:24:38] -rwx------. 1 boinc boinc     36292 Oct  9 07:19 runpilot2-wrapper.sh
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc       100 Oct  9 10:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 14:24:38] -rwxr-xr-x. 1 boinc boinc      7986 Oct  9 10:31 run_atlas
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc       105 Oct  9 10:31 job.xml
[2025-10-09 14:24:38] -rw-r--r--. 2 boinc boinc 218571903 Oct  9 10:31 EVNT.46676267._000640.pool.root.1
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc      6745 Oct  9 10:31 init_data.xml
[2025-10-09 14:24:38] drwxrwx--x. 2 boinc boinc      4096 Oct  9 10:31 shared
[2025-10-09 14:24:38] -rw-r--r--. 2 boinc boinc    569678 Oct  9 10:31 input.tar.gz
[2025-10-09 14:24:38] -rw-r--r--. 2 boinc boinc     15120 Oct  9 10:31 start_atlas.sh
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc         0 Oct  9 10:31 boinc_lockfile
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc      2546 Oct  9 10:31 pandaJob.out
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc    975462 Oct  9 10:32 agis_schedconf.cvmfs.json
[2025-10-09 14:24:38] drwx------. 5 boinc boinc      4096 Oct  9 10:32 pilot3
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc 185778121 Oct  9 14:23 HITS.46676269._015553.pool.root.1
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc       530 Oct  9 14:23 boinc_task_state.xml
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc      1014 Oct  9 14:23 memory_monitor_summary.json
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc   1560401 Oct  9 14:23 agis_ddmendpoints.agis.ALL.json
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc    375702 Oct  9 14:23 log.46676269._015553.job.log.tgz.1
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc      7761 Oct  9 14:24 heartbeat.json
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc      8192 Oct  9 14:24 boinc_mmap_file
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc        28 Oct  9 14:24 wrapper_checkpoint.txt
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc       817 Oct  9 14:24 pilotlog.txt
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc        95 Oct  9 14:24 pilot_heartbeat.json
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc   1934272 Oct  9 14:24 log.46676269._015553.job.log.1
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc       357 Oct  9 14:24 output.list
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc       620 Oct  9 14:24 runtime_log
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc   2324480 Oct  9 14:24 result.tar.gz
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc      8659 Oct  9 14:24 runtime_log.err
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc       648 Oct  9 14:24 PuaMDmQr3Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtVZNDmG45Ljm.diag
[2025-10-09 14:24:38] -rw-r--r--. 1 boinc boinc     21094 Oct  9 14:24 stderr.txt
[2025-10-09 14:24:38] HITS file was successfully produced:
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc 185778121 Oct  9 14:23 shared/HITS.pool.root.1
[2025-10-09 14:24:38]  *** Contents of shared directory: ***
[2025-10-09 14:24:38] total 397732
[2025-10-09 14:24:38] -rw-r--r--. 2 boinc boinc 218571903 Oct  9 10:31 ATLAS.root_0
[2025-10-09 14:24:38] -rw-r--r--. 2 boinc boinc    569678 Oct  9 10:31 input.tar.gz
[2025-10-09 14:24:38] -rw-r--r--. 2 boinc boinc     15120 Oct  9 10:31 start_atlas.sh
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc 185778121 Oct  9 14:23 HITS.pool.root.1
[2025-10-09 14:24:38] -rw-------. 1 boinc boinc   2324480 Oct  9 14:24 result.tar.gz
14:24:40 (1048391): run_atlas exited; CPU time 40439.905585
14:24:40 (1048391): called boinc_finish(0)

</stderr_txt>
]]>

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