Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:29:24 (2441317): wrapper (7.7.26015): starting
06:29:24 (2441317): wrapper: running run_atlas (--nthreads 12)
[2025-10-09 06:29:24] Arguments: --nthreads 12
[2025-10-09 06:29:24] Threads: 12
[2025-10-09 06:29:24] Checking for CVMFS
[2025-10-09 06:29:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 06:29:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 06:29:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 06:29:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 06:29:24] 2.11.5.0 2588 27236 233632 151513 3 437 24641404 45568000 12410 130560 0 263715531 99.871 112125957 28860 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-09 06:29:24] CVMFS is ok
[2025-10-09 06:29:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 06:29:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 06:29:24] Further information can be found at the LHC@home message board.
[2025-10-09 06:29:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 06:29:24] Checking for apptainer binary...
[2025-10-09 06:29:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 06:29:24] Running /usr/bin/apptainer --version
[2025-10-09 06:29:24] apptainer version 1.4.1-1.el9
[2025-10-09 06:29:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 06:29:24] wns0080.triumf.lcg
[2025-10-09 06:29:24] apptainer works
[2025-10-09 06:29:24] Set ATHENA_PROC_NUMBER=12
[2025-10-09 06:29:24] Set ATHENA_CORE_NUMBER=12
[2025-10-09 06:29:24] Starting ATLAS job with PandaID=6837327848
[2025-10-09 06:29:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 06:33:03]  *** The last 200 lines of the pilot log: ***
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | WARNING  | wrong length of table data, x=[1760016606.0], y=[1274.0] (must be same and length>=4)
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | could have reported an average CPU frequency of 2574 MHz (4 samples)
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | ..............................
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . Timing measurements:
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . get job = 0 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . initial setup = 3 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . payload setup = 7 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . stage-in = 0 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . payload execution = 24 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . stage-out = 0 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . log creation = 0 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | ..............................
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-09 06:33:03] 2025-10-09 13:32:30,488 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837327848/pilotlog.txt
[2025-10-09 06:33:03] 2025-10-09 13:32:30,525 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-09 06:33:03] - Log from pilotlog.txt -
[2025-10-09 06:33:03] 2025-10-09 13:32:30,485 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 06:33:03] 2025-10-09 13:32:30,485 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 06:33:03] 2025-10-09 13:32:30,486 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 06:33:03] 2025-10-09 13:32:30,486 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 06:33:03] 2025-10-09 13:32:30,486 | WARNING  | found no stored workdir sizes
[2025-10-09 06:33:03] 2025-10-09 13:32:30,486 | INFO     | will not add max space = 0 B to job metrics
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | WARNING  | wrong length of table data, x=[1760016606.0], y=[1274.0] (must be same and length>=4)
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | could have reported an average CPU frequency of 2574 MHz (4 samples)
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | ..............................
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . Timing measurements:
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . get job = 0 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . initial setup = 3 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . payload setup = 7 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . stage-in = 0 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . payload execution = 24 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . stage-out = 0 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . log creation = 0 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | ..............................
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-09 06:33:03] 2025-10-09 13:32:30,488 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837327848/pilotlog.txt
[2025-10-09 06:33:03] 2025-10-09 13:32:30,526 | WARNING  | 
[2025-10-09 06:33:03] [begin log extracts]
[2025-10-09 06:33:03] - Log from pilotlog.txt -
[2025-10-09 06:33:03] 2025-10-09 13:32:30,485 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 06:33:03] 2025-10-09 13:32:30,485 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 06:33:03] 2025-10-09 13:32:30,486 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 06:33:03] 2025-10-09 13:32:30,486 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 06:33:03] 2025-10-09 13:32:30,486 | WARNING  | found no stored workdir sizes
[2025-10-09 06:33:03] 2025-10-09 13:32:30,486 | INFO     | will not add max space = 0 B to job metrics
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | WARNING  | wrong length of table data, x=[1760016606.0], y=[1274.0] (must be same and length>=4)
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | could have reported an average CPU frequency of 2574 MHz (4 samples)
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | ..............................
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . Timing measurements:
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . get job = 0 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . initial setup = 3 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . payload setup = 7 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . stage-in = 0 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . payload execution = 24 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . stage-out = 0 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | . log creation = 0 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | ..............................
[2025-10-09 06:33:03] 2025-10-09 13:32:30,487 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-09 06:33:03] 2025-10-09 13:32:30,488 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837327848/pilotlog.txt
[2025-10-09 06:33:03] [end log extracts]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,526 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-09 06:33:03] 2025-10-09 13:32:30,527 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-09 06:33:03] 2025-10-09 13:32:30,747 | INFO     | 
[2025-10-09 06:33:03] 2025-10-09 13:32:30,747 | INFO     | job summary report
[2025-10-09 06:33:03] 2025-10-09 13:32:30,747 | INFO     | --------------------------------------------------
[2025-10-09 06:33:03] 2025-10-09 13:32:30,747 | INFO     | PanDA job id: 6837327848
[2025-10-09 06:33:03] 2025-10-09 13:32:30,747 | INFO     | task id: 46676269
[2025-10-09 06:33:03] 2025-10-09 13:32:30,747 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-09 06:30:18,440 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-09 06:33:03] 2025-10-09 13:32:30,747 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 06:33:03] 2025-10-09 13:32:30,747 | INFO     | pilot state: failed 
[2025-10-09 06:33:03] 2025-10-09 13:32:30,747 | INFO     | transexitcode: 65
[2025-10-09 06:33:03] 2025-10-09 13:32:30,747 | INFO     | exeerrorcode: 65
[2025-10-09 06:33:03] 2025-10-09 13:32:30,747 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | exitcode: 65
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | cpuconsumptiontime: 16 s
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | nevents: 0
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | neventsw: 0
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | pid: 2451485
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | pgrp: 2451485
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | corecount: 12
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | event service: False
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | sizes: {0: 2348853, 4: 2349115, 11: 2349143, 35: 2372344, 37: 2376636, 39: 2376664, 161: 2376958}
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | --------------------------------------------------
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | 
[2025-10-09 06:33:03] 2025-10-09 13:32:30,748 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-09 06:33:03] 2025-10-09 13:32:30,865 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,865 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,865 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,865 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,865 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | job 6837327848 has completed (purged errors)
[2025-10-09 06:33:03] 2025-10-09 13:32:30,866 | INFO     | overall cleanup function is called
[2025-10-09 06:33:03] 2025-10-09 13:32:31,013 | INFO     | PID=2444957 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 06:33:03] 2025-10-09 13:32:31,014 | INFO     | .. there are 14 such processes running
[2025-10-09 06:33:03] 2025-10-09 13:32:31,872 | INFO     | --- collectZombieJob: --- 10, [2451485]
[2025-10-09 06:33:03] 2025-10-09 13:32:31,872 | INFO     | zombie collector waiting for pid 2451485
[2025-10-09 06:33:03] 2025-10-09 13:32:31,872 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 06:33:03] 2025-10-09 13:32:31,872 | INFO     | collected zombie processes
[2025-10-09 06:33:03] 2025-10-09 13:32:31,872 | INFO     | will attempt to kill all subprocesses of pid=2451485
[2025-10-09 06:33:03] 2025-10-09 13:32:32,161 | INFO     | process IDs to be killed: [2451485] (in reverse order)
[2025-10-09 06:33:03] 2025-10-09 13:32:32,224 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 06:33:03] 2025-10-09 13:32:32,225 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 06:33:03] 2025-10-09 13:32:32,230 | INFO     | did not find any defunct processes belonging to 2451485
[2025-10-09 06:33:03] 2025-10-09 13:32:32,235 | INFO     | did not find any defunct processes belonging to 2451485
[2025-10-09 06:33:03] 2025-10-09 13:32:32,236 | INFO     | ready for new job
[2025-10-09 06:33:03] 2025-10-09 13:32:32,236 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 06:33:03] 2025-10-09 13:32:32,237 | INFO     | ***************************************
[2025-10-09 06:33:03] 2025-10-09 13:32:32,237 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 06:33:03] 2025-10-09 13:32:32,237 | INFO     | ***************************************
[2025-10-09 06:33:03] 2025-10-09 13:32:32,237 | INFO     | 
[2025-10-09 06:33:03] 2025-10-09 13:32:32,239 | INFO     | architecture information:
[2025-10-09 06:33:03] 2025-10-09 13:32:32,239 | INFO     | executing command: cat /etc/os-release
[2025-10-09 06:33:03] 2025-10-09 13:32:32,251 | INFO     | cat /etc/os-release:
[2025-10-09 06:33:03] NAME="CentOS Linux"
[2025-10-09 06:33:03] VERSION="7 (Core)"
[2025-10-09 06:33:03] ID="centos"
[2025-10-09 06:33:03] ID_LIKE="rhel fedora"
[2025-10-09 06:33:03] VERSION_ID="7"
[2025-10-09 06:33:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 06:33:03] ANSI_COLOR="0;31"
[2025-10-09 06:33:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 06:33:03] HOME_URL="https://www.centos.org/"
[2025-10-09 06:33:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 06:33:03] 
[2025-10-09 06:33:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 06:33:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 06:33:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 06:33:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 06:33:03] 
[2025-10-09 06:33:03] 2025-10-09 13:32:32,251 | INFO     | ***************************************
[2025-10-09 06:33:03] 2025-10-09 13:32:32,755 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-09 06:33:03] 2025-10-09 13:32:32,765 | INFO     | sufficient remaining disk space (1945302466560 B)
[2025-10-09 06:33:03] 2025-10-09 13:32:32,766 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 06:33:03] 2025-10-09 13:32:32,766 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 06:33:03] 2025-10-09 13:32:32,766 | INFO     | update_server=False
[2025-10-09 06:33:03] 2025-10-09 13:32:32,766 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 06:33:03] 2025-10-09 13:32:32,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 06:33:03] 2025-10-09 13:32:32,766 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 06:33:03] 2025-10-09 13:32:32,766 | INFO     | aborting loop
[2025-10-09 06:33:03] 2025-10-09 13:32:32,794 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 06:33:03] 2025-10-09 13:32:32,873 | INFO     | [monitor] cgroup control has ended
[2025-10-09 06:33:03] 2025-10-09 13:32:33,162 | INFO     | all job control threads have been joined
[2025-10-09 06:33:03] 2025-10-09 13:32:33,180 | INFO     | all payload control threads have been joined
[2025-10-09 06:33:03] 2025-10-09 13:32:33,772 | INFO     | [job] job monitor thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:33,772 | INFO     | [job] retrieve thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:33,794 | INFO     | all data control threads have been joined
[2025-10-09 06:33:03] 2025-10-09 13:32:34,167 | INFO     | [job] control thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:34,170 | INFO     | [data] copytool_in thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:34,185 | INFO     | [payload] control thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:34,198 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:34,608 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:34,800 | INFO     | [data] control thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:34,800 | INFO     | [job] validate thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:34,802 | INFO     | [data] copytool_out thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:34,814 | INFO     | [payload] failed_post thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:34,953 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:35,049 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:35,135 | INFO     | [payload] validate_post thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:35,599 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 06:33:03] 2025-10-09 13:32:36,604 | INFO     | [job] queue monitor thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:36,775 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 06:33:03] 2025-10-09 13:32:37,505 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140304305174336)>', '<ExcThread(monitor, started 140303495329536)>']
[2025-10-09 06:33:03] 2025-10-09 13:32:42,530 | INFO     | all workflow threads have been joined
[2025-10-09 06:33:03] 2025-10-09 13:32:42,530 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 06:33:03] 2025-10-09 13:32:42,530 | INFO     | traces error code: 0
[2025-10-09 06:33:03] 2025-10-09 13:32:42,530 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 06:33:03] 2025-10-09 13:33:03,349 | INFO     | PID=2444957 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 06:33:03] 2025-10-09 13:33:03,349 | INFO     | .. there are 14 such processes running
[2025-10-09 06:33:03] 2025-10-09 13:33:03,349 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 06:33:03] 2025-10-09 13:33:03,350 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 06:33:03] 2025-10-09 13:33:03,350 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 06:33:03] 2025-10-09 13:33:03,350 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 06:33:03] 2025-10-09 13:33:03,350 | CRITICAL | thread 'MainThread' is not alive
[2025-10-09 06:33:03] 2025-10-09 13:33:03,350 | INFO     | [monitor] control thread has ended
[2025-10-09 06:33:03] 2025-10-09 13:33:03,472 [wrapper] ==== pilot stdout END ====
[2025-10-09 06:33:03] 2025-10-09 13:33:03,473 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 06:33:03] 2025-10-09 13:33:03,475 [wrapper] pilotpid: 2444957
[2025-10-09 06:33:03] 2025-10-09 13:33:03,478 [wrapper] Pilot exit status: 0
[2025-10-09 06:33:03] 2025-10-09 13:33:03,484 [wrapper] pandaids: 6837327848
[2025-10-09 06:33:03] 2025-10-09 13:33:03,521 [wrapper] cleanup supervisor_pilot 2444963 2444958
[2025-10-09 06:33:03] 2025-10-09 13:33:03,524 [wrapper] Test setup, not cleaning
[2025-10-09 06:33:03] 2025-10-09 13:33:03,528 [wrapper] apfmon messages muted
[2025-10-09 06:33:03] 2025-10-09 13:33:03,530 [wrapper] ==== wrapper stdout END ====
[2025-10-09 06:33:03] 2025-10-09 13:33:03,532 [wrapper] ==== wrapper stderr END ====
[2025-10-09 06:33:03]  *** Error codes and diagnostics ***
[2025-10-09 06:33:03]     "exeErrorCode": 65,
[2025-10-09 06:33:03]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-09 06:33:03]     "pilotErrorCode": 1305,
[2025-10-09 06:33:03]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-09 06:33:03]  *** Listing of results directory ***
[2025-10-09 06:33:03] total 220684
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc    557409 Oct  9 03:27 pilot3.tar.gz
[2025-10-09 06:33:03] -rwx------. 1 boinc boinc     36292 Oct  9 03:43 runpilot2-wrapper.sh
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc      5112 Oct  9 03:45 queuedata.json
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc       100 Oct  9 06:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 06:33:03] -rwxr-xr-x. 1 boinc boinc      7986 Oct  9 06:29 run_atlas
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc       105 Oct  9 06:29 job.xml
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc      6593 Oct  9 06:29 init_data.xml
[2025-10-09 06:33:03] -rw-r--r--. 2 boinc boinc 221876167 Oct  9 06:29 EVNT.46676267._000541.pool.root.1
[2025-10-09 06:33:03] -rw-r--r--. 2 boinc boinc     15120 Oct  9 06:29 start_atlas.sh
[2025-10-09 06:33:03] drwxrwx--x. 2 boinc boinc      4096 Oct  9 06:29 shared
[2025-10-09 06:33:03] -rw-r--r--. 2 boinc boinc    569681 Oct  9 06:29 input.tar.gz
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc         0 Oct  9 06:29 boinc_lockfile
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc      2550 Oct  9 06:29 pandaJob.out
[2025-10-09 06:33:03] -rw-------. 1 boinc boinc    975462 Oct  9 06:29 agis_schedconf.cvmfs.json
[2025-10-09 06:33:03] -rw-------. 1 boinc boinc   1560401 Oct  9 06:29 agis_ddmendpoints.agis.ALL.json
[2025-10-09 06:33:03] drwx------. 5 boinc boinc      4096 Oct  9 06:29 pilot3
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc       521 Oct  9 06:30 boinc_task_state.xml
[2025-10-09 06:33:03] -rw-------. 1 boinc boinc       952 Oct  9 06:30 memory_monitor_summary.json
[2025-10-09 06:33:03] -rw-------. 1 boinc boinc     21249 Oct  9 06:30 log.46676269._013282.job.log.tgz.1
[2025-10-09 06:33:03] -rw-------. 1 boinc boinc      8399 Oct  9 06:32 heartbeat.json
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc      8192 Oct  9 06:33 boinc_mmap_file
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc        22 Oct  9 06:33 wrapper_checkpoint.txt
[2025-10-09 06:33:03] -rw-------. 1 boinc boinc        95 Oct  9 06:33 pilot_heartbeat.json
[2025-10-09 06:33:03] -rw-------. 1 boinc boinc       893 Oct  9 06:33 pilotlog.txt
[2025-10-09 06:33:03] -rw-------. 1 boinc boinc     84237 Oct  9 06:33 log.46676269._013282.job.log.1
[2025-10-09 06:33:03] -rw-------. 1 boinc boinc       188 Oct  9 06:33 output.list
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc       620 Oct  9 06:33 runtime_log
[2025-10-09 06:33:03] -rw-------. 1 boinc boinc    122880 Oct  9 06:33 result.tar.gz
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc      8528 Oct  9 06:33 runtime_log.err
[2025-10-09 06:33:03] -rw-------. 1 boinc boinc       644 Oct  9 06:33 qfuLDmkI3Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9DZNDmhhd6Qn.diag
[2025-10-09 06:33:03] -rw-r--r--. 1 boinc boinc     21754 Oct  9 06:33 stderr.txt
[2025-10-09 06:33:03] No HITS result produced
[2025-10-09 06:33:03]  *** Contents of shared directory: ***
[2025-10-09 06:33:03] total 217376
[2025-10-09 06:33:03] -rw-r--r--. 2 boinc boinc 221876167 Oct  9 06:29 ATLAS.root_0
[2025-10-09 06:33:03] -rw-r--r--. 2 boinc boinc     15120 Oct  9 06:29 start_atlas.sh
[2025-10-09 06:33:03] -rw-r--r--. 2 boinc boinc    569681 Oct  9 06:29 input.tar.gz
[2025-10-09 06:33:03] -rw-------. 1 boinc boinc    122880 Oct  9 06:33 result.tar.gz
06:33:04 (2441317): run_atlas exited; CPU time 21.592083
06:33:04 (2441317): called boinc_finish(0)

</stderr_txt>
]]>

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