Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:15:30 (25828): wrapper (7.7.26015): starting
09:15:30 (25828): wrapper: running run_atlas (--nthreads 12)
[2025-10-09 09:15:30] Arguments: --nthreads 12
[2025-10-09 09:15:30] Threads: 12
[2025-10-09 09:15:30] Checking for CVMFS
[2025-10-09 09:15:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 09:15:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 09:15:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 09:15:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 09:15:31] 2.11.2.0 2916 218563 102816 151513 1 56 15057357 20275201 1 130560 1 103743612 99.984 13270605 12410 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-09 09:15:31] CVMFS is ok
[2025-10-09 09:15:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 09:15:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 09:15:31] Further information can be found at the LHC@home message board.
[2025-10-09 09:15:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 09:15:31] Checking for apptainer binary...
[2025-10-09 09:15:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 09:15:31] Running /usr/bin/apptainer --version
[2025-10-09 09:15:31] apptainer version 1.3.2-1.el7
[2025-10-09 09:15:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 09:15:32] c-205-23.aglt2.org
[2025-10-09 09:15:32] apptainer works
[2025-10-09 09:15:32] Set ATHENA_PROC_NUMBER=12
[2025-10-09 09:15:32] Set ATHENA_CORE_NUMBER=12
[2025-10-09 09:15:32] Starting ATLAS job with PandaID=6837331544
[2025-10-09 09:15:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 10:28:59]  *** The last 200 lines of the pilot log: ***
[2025-10-09 10:28:59]  scope=mc23_13p6TeV
[2025-10-09 10:28:59]  status=None
[2025-10-09 10:28:59]  status_code=0
[2025-10-09 10:28:59]  storage_token=
[2025-10-09 10:28:59]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837331544/log.46676269._014860.job.log.tgz.1
[2025-10-09 10:28:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/70/log.46676269._014860.job.log.tgz.1
[2025-10-09 10:28:59]  workdir=None
[2025-10-09 10:28:59] ]
[2025-10-09 10:28:59] 2025-10-09 14:28:12,150 | INFO     | transferring file log.46676269._014860.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837331544/log.46676269._014860.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-09 10:28:59] 2025-10-09 14:28:12,150 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837331544/log.46676269._014860.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._014860.job
[2025-10-09 10:28:59] 2025-10-09 14:28:12,172 | INFO     | adding to output.list: log.46676269._014860.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/70/log.46676269._014860.job.log.tg
[2025-10-09 10:28:59] 2025-10-09 14:28:12,173 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-09 10:28:59] 2025-10-09 14:28:12,173 | INFO     | summary of transferred files:
[2025-10-09 10:28:59] 2025-10-09 14:28:12,174 | INFO     |  -- lfn=log.46676269._014860.job.log.tgz.1, status_code=0, status=transferred
[2025-10-09 10:28:59] 2025-10-09 14:28:12,174 | INFO     | stage-out finished correctly
[2025-10-09 10:28:59] 2025-10-09 14:28:13,146 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-09 10:28:59] 2025-10-09 14:28:13,610 | INFO     | time since job start (4345s) is within the limit (172800.0s)
[2025-10-09 10:28:59] 2025-10-09 14:28:14,278 | INFO     | job 6837331544 has state=finished
[2025-10-09 10:28:59] 2025-10-09 14:28:14,278 | INFO     | preparing for final server update for job 6837331544 in state='finished'
[2025-10-09 10:28:59] 2025-10-09 14:28:14,340 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-09 10:28:59] 2025-10-09 14:28:14,340 | INFO     | this job has now completed (state=finished)
[2025-10-09 10:28:59] 2025-10-09 14:28:14,340 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-09 10:28:59] 2025-10-09 14:28:14,340 | INFO     | log transfer has been attempted: DONE
[2025-10-09 10:28:59] 2025-10-09 14:28:14,340 | INFO     | job 6837331544 has finished - writing final server update
[2025-10-09 10:28:59] 2025-10-09 14:28:14,341 | INFO     | total number of processed events: 400 (read)
[2025-10-09 10:28:59] 2025-10-09 14:28:14,341 | INFO     | executing command: lscpu
[2025-10-09 10:28:59] 2025-10-09 14:28:14,364 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-09 10:28:59] 2025-10-09 14:28:15,034 | WARNING  | process 3624 can no longer be monitored (due to stat problems) - aborting
[2025-10-09 10:28:59] 2025-10-09 14:28:15,034 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837331544/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 10:28:59] 2025-10-09 14:28:15,129 | INFO     | number of running child processes to parent process 3624: 1
[2025-10-09 10:28:59] 2025-10-09 14:28:15,129 | INFO     | maximum number of monitored processes: 6
[2025-10-09 10:28:59] 2025-10-09 14:28:15,616 | INFO     | time since job start (4347s) is within the limit (172800.0s)
[2025-10-09 10:28:59] 2025-10-09 14:28:16,737 | INFO     | PID=29510 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 10:28:59] 2025-10-09 14:28:17,632 | INFO     | monitor loop #323: job 0:6837331544 is in state 'finished'
[2025-10-09 10:28:59] 2025-10-09 14:28:17,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 10:28:59] 2025-10-09 14:28:17,738 | INFO     | time since job start (4349s) is within the limit (172800.0s)
[2025-10-09 10:28:59] 2025-10-09 14:28:18,928 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-09 10:28:59] 2025-10-09 14:28:18,931 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1862.1666666666667
[2025-10-09 10:28:59] 2025-10-09 14:28:18,933 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837331544/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 10:28:59] 2025-10-09 14:28:18,934 | INFO     | extracted standard info from prmon json
[2025-10-09 10:28:59] 2025-10-09 14:28:18,934 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 10:28:59] 2025-10-09 14:28:18,934 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 10:28:59] 2025-10-09 14:28:18,934 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 10:28:59] 2025-10-09 14:28:18,935 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 10:28:59] 2025-10-09 14:28:18,936 | INFO     | fitting pss+swap vs Time
[2025-10-09 10:28:59] 2025-10-09 14:28:18,937 | INFO     | sum of square deviations: 81266640.0
[2025-10-09 10:28:59] 2025-10-09 14:28:18,937 | INFO     | sum of deviations: 1369449451.0
[2025-10-09 10:28:59] 2025-10-09 14:28:18,937 | INFO     | mean x: 1760018003.5
[2025-10-09 10:28:59] 2025-10-09 14:28:18,937 | INFO     | mean y: 2967306.03125
[2025-10-09 10:28:59] 2025-10-09 14:28:18,938 | INFO     | -- intersect: -29655644009.056847
[2025-10-09 10:28:59] 2025-10-09 14:28:18,938 | INFO     | intersect: -29655644009.056847
[2025-10-09 10:28:59] 2025-10-09 14:28:18,938 | INFO     | chi2: 0.0011744205260952006
[2025-10-09 10:28:59] 2025-10-09 14:28:18,938 | INFO     | -- intersect: -29655644009.056847
[2025-10-09 10:28:59] 2025-10-09 14:28:18,938 | INFO     | current memory leak: 16.85 B/s (using 64 data points, chi2=0.00)
[2025-10-09 10:28:59] 2025-10-09 14:28:18,939 | INFO     | could have reported an average CPU frequency of 2050 MHz (6 samples)
[2025-10-09 10:28:59] 2025-10-09 14:28:18,939 | INFO     | ..............................
[2025-10-09 10:28:59] 2025-10-09 14:28:18,939 | INFO     | . Timing measurements:
[2025-10-09 10:28:59] 2025-10-09 14:28:18,939 | INFO     | . get job = 0 s
[2025-10-09 10:28:59] 2025-10-09 14:28:18,939 | INFO     | . initial setup = 2 s
[2025-10-09 10:28:59] 2025-10-09 14:28:18,939 | INFO     | . payload setup = 7 s
[2025-10-09 10:28:59] 2025-10-09 14:28:18,939 | INFO     | . stage-in = 0 s
[2025-10-09 10:28:59] 2025-10-09 14:28:18,940 | INFO     | . payload execution = 4316 s
[2025-10-09 10:28:59] 2025-10-09 14:28:18,940 | INFO     | . stage-out = 0 s
[2025-10-09 10:28:59] 2025-10-09 14:28:18,940 | INFO     | . log creation = 0 s
[2025-10-09 10:28:59] 2025-10-09 14:28:18,940 | INFO     | ..............................
[2025-10-09 10:28:59] 2025-10-09 14:28:19,196 | INFO     | 
[2025-10-09 10:28:59] 2025-10-09 14:28:19,197 | INFO     | job summary report
[2025-10-09 10:28:59] 2025-10-09 14:28:19,197 | INFO     | --------------------------------------------------
[2025-10-09 10:28:59] 2025-10-09 14:28:19,197 | INFO     | PanDA job id: 6837331544
[2025-10-09 10:28:59] 2025-10-09 14:28:19,197 | INFO     | task id: 46676269
[2025-10-09 10:28:59] 2025-10-09 14:28:19,198 | INFO     | errors: (none)
[2025-10-09 10:28:59] 2025-10-09 14:28:19,198 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 10:28:59] 2025-10-09 14:28:19,198 | INFO     | pilot state: finished 
[2025-10-09 10:28:59] 2025-10-09 14:28:19,198 | INFO     | transexitcode: 0
[2025-10-09 10:28:59] 2025-10-09 14:28:19,198 | INFO     | exeerrorcode: 0
[2025-10-09 10:28:59] 2025-10-09 14:28:19,198 | INFO     | exeerrordiag: 
[2025-10-09 10:28:59] 2025-10-09 14:28:19,199 | INFO     | exitcode: 0
[2025-10-09 10:28:59] 2025-10-09 14:28:19,199 | INFO     | exitmsg: OK
[2025-10-09 10:28:59] 2025-10-09 14:28:19,199 | INFO     | cpuconsumptiontime: 46472 s
[2025-10-09 10:28:59] 2025-10-09 14:28:19,199 | INFO     | nevents: 400
[2025-10-09 10:28:59] 2025-10-09 14:28:19,199 | INFO     | neventsw: 0
[2025-10-09 10:28:59] 2025-10-09 14:28:19,199 | INFO     | pid: 3624
[2025-10-09 10:28:59] 2025-10-09 14:28:19,199 | INFO     | pgrp: 3624
[2025-10-09 10:28:59] 2025-10-09 14:28:19,200 | INFO     | corecount: 12
[2025-10-09 10:28:59] 2025-10-09 14:28:19,200 | INFO     | event service: False
[2025-10-09 10:28:59] 2025-10-09 14:28:19,200 | INFO     | sizes: {0: 2348685, 1: 2348884, 6: 2349146, 12: 2349174, 4327: 2375194, 4328: 2384375, 4329: 2384375, 4335: 2384569}
[2025-10-09 10:28:59] 2025-10-09 14:28:19,200 | INFO     | --------------------------------------------------
[2025-10-09 10:28:59] 2025-10-09 14:28:19,200 | INFO     | 
[2025-10-09 10:28:59] 2025-10-09 14:28:19,200 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-09 10:28:59] 2025-10-09 14:28:19,223 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,224 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,224 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,224 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,224 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,224 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,224 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,225 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,225 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,225 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,225 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,225 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,225 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,226 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,226 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,226 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,226 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,226 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 10:28:59] 2025-10-09 14:28:19,226 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,227 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 10:28:59] 2025-10-09 14:28:19,227 | INFO     | job 6837331544 has completed (purged errors)
[2025-10-09 10:28:59] 2025-10-09 14:28:19,227 | INFO     | overall cleanup function is called
[2025-10-09 10:28:59] 2025-10-09 14:28:20,235 | INFO     | --- collectZombieJob: --- 10, [3624]
[2025-10-09 10:28:59] 2025-10-09 14:28:20,236 | INFO     | zombie collector waiting for pid 3624
[2025-10-09 10:28:59] 2025-10-09 14:28:20,236 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 10:28:59] 2025-10-09 14:28:20,236 | INFO     | collected zombie processes
[2025-10-09 10:28:59] 2025-10-09 14:28:20,236 | INFO     | will attempt to kill all subprocesses of pid=3624
[2025-10-09 10:28:59] 2025-10-09 14:28:20,329 | INFO     | process IDs to be killed: [3624] (in reverse order)
[2025-10-09 10:28:59] 2025-10-09 14:28:20,381 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 10:28:59] 2025-10-09 14:28:20,381 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 10:28:59] 2025-10-09 14:28:20,385 | INFO     | did not find any defunct processes belonging to 3624
[2025-10-09 10:28:59] 2025-10-09 14:28:20,388 | INFO     | did not find any defunct processes belonging to 3624
[2025-10-09 10:28:59] 2025-10-09 14:28:20,389 | INFO     | ready for new job
[2025-10-09 10:28:59] 2025-10-09 14:28:20,389 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 10:28:59] 2025-10-09 14:28:20,390 | INFO     | ***************************************
[2025-10-09 10:28:59] 2025-10-09 14:28:20,390 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 10:28:59] 2025-10-09 14:28:20,390 | INFO     | ***************************************
[2025-10-09 10:28:59] 2025-10-09 14:28:20,390 | INFO     | 
[2025-10-09 10:28:59] 2025-10-09 14:28:20,391 | INFO     | architecture information:
[2025-10-09 10:28:59] 2025-10-09 14:28:20,391 | INFO     | executing command: cat /etc/os-release
[2025-10-09 10:28:59] 2025-10-09 14:28:20,406 | INFO     | cat /etc/os-release:
[2025-10-09 10:28:59] NAME="CentOS Linux"
[2025-10-09 10:28:59] VERSION="7 (Core)"
[2025-10-09 10:28:59] ID="centos"
[2025-10-09 10:28:59] ID_LIKE="rhel fedora"
[2025-10-09 10:28:59] VERSION_ID="7"
[2025-10-09 10:28:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 10:28:59] ANSI_COLOR="0;31"
[2025-10-09 10:28:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 10:28:59] HOME_URL="https://www.centos.org/"
[2025-10-09 10:28:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 10:28:59] 
[2025-10-09 10:28:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 10:28:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 10:28:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 10:28:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 10:28:59] 
[2025-10-09 10:28:59] 2025-10-09 14:28:20,406 | INFO     | ***************************************
[2025-10-09 10:28:59] 2025-10-09 14:28:20,909 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-09 10:28:59] 2025-10-09 14:28:20,926 | INFO     | sufficient remaining disk space (29368516608 B)
[2025-10-09 10:28:59] 2025-10-09 14:28:20,926 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 10:28:59] 2025-10-09 14:28:20,926 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 10:28:59] 2025-10-09 14:28:20,927 | INFO     | update_server=False
[2025-10-09 10:28:59] 2025-10-09 14:28:20,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 10:28:59] 2025-10-09 14:28:20,927 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 10:28:59] 2025-10-09 14:28:20,927 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 10:28:59] 2025-10-09 14:28:21,140 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 10:28:59] 2025-10-09 14:28:21,140 | INFO     | aborting loop
[2025-10-09 10:28:59] 2025-10-09 14:28:21,331 | INFO     | all data control threads have been joined
[2025-10-09 10:28:59] 2025-10-09 14:28:21,746 | INFO     | all payload control threads have been joined
[2025-10-09 10:28:59] 2025-10-09 14:28:21,932 | INFO     | [job] retrieve thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:21,933 | INFO     | [job] queue monitor thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:22,044 | INFO     | [payload] validate_post thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:22,099 | INFO     | all job control threads have been joined
[2025-10-09 10:28:59] 2025-10-09 14:28:22,143 | INFO     | [job] job monitor thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:22,257 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:22,337 | INFO     | [data] control thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:22,493 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:22,598 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:22,706 | INFO     | [data] copytool_in thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:22,731 | INFO     | [payload] failed_post thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:22,752 | INFO     | [payload] control thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:22,933 | INFO     | [data] copytool_out thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:23,104 | INFO     | [job] control thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:23,425 | INFO     | [job] validate thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:23,733 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 10:28:59] 2025-10-09 14:28:27,739 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:31,450 | INFO     | job.realtimelogging is not enabled
[2025-10-09 10:28:59] 2025-10-09 14:28:32,453 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 10:28:59] 2025-10-09 14:28:50,944 | INFO     | PID=29510 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-09 10:28:59] 2025-10-09 14:28:50,945 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 10:28:59] 2025-10-09 14:28:50,945 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 10:28:59] 2025-10-09 14:28:50,945 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 10:28:59] 2025-10-09 14:28:54,439 | INFO     | [monitor] cgroup control has ended
[2025-10-09 10:28:59] 2025-10-09 14:28:54,485 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139756260898624)>', '<ExcThread(monitor, started 139755668887296)>']
[2025-10-09 10:28:59] 2025-10-09 14:28:54,966 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 10:28:59] 2025-10-09 14:28:54,966 | INFO     | [monitor] control thread has ended
[2025-10-09 10:28:59] 2025-10-09 14:28:59,507 | INFO     | all workflow threads have been joined
[2025-10-09 10:28:59] 2025-10-09 14:28:59,507 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 10:28:59] 2025-10-09 14:28:59,507 | INFO     | traces error code: 0
[2025-10-09 10:28:59] 2025-10-09 14:28:59,507 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 10:28:59] 2025-10-09 14:28:59,595 [wrapper] ==== pilot stdout END ====
[2025-10-09 10:28:59] 2025-10-09 14:28:59,598 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 10:28:59] 2025-10-09 14:28:59,602 [wrapper] pilotpid: 29510
[2025-10-09 10:28:59] 2025-10-09 14:28:59,606 [wrapper] Pilot exit status: 0
[2025-10-09 10:28:59] 2025-10-09 14:28:59,623 [wrapper] pandaids: 6837331544
[2025-10-09 10:28:59] 2025-10-09 14:28:59,664 [wrapper] cleanup supervisor_pilot  6601 29511
[2025-10-09 10:28:59] 2025-10-09 14:28:59,668 [wrapper] Test setup, not cleaning
[2025-10-09 10:28:59] 2025-10-09 14:28:59,672 [wrapper] apfmon messages muted
[2025-10-09 10:28:59] 2025-10-09 14:28:59,676 [wrapper] ==== wrapper stdout END ====
[2025-10-09 10:28:59] 2025-10-09 14:28:59,680 [wrapper] ==== wrapper stderr END ====
[2025-10-09 10:28:59]  *** Error codes and diagnostics ***
[2025-10-09 10:28:59]     "exeErrorCode": 0,
[2025-10-09 10:28:59]     "exeErrorDiag": "",
[2025-10-09 10:28:59]     "pilotErrorCode": 0,
[2025-10-09 10:28:59]     "pilotErrorDiag": "",
[2025-10-09 10:28:59]  *** Listing of results directory ***
[2025-10-09 10:28:59] total 409752
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas      5112 Oct  9 06:51 queuedata.json
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas    557409 Oct  9 06:52 pilot3.tar.gz
[2025-10-09 10:28:59] -rwx------ 1 boincer umatlas     36292 Oct  9 06:55 runpilot2-wrapper.sh
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas       100 Oct  9 09:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 10:28:59] -rwxr-xr-x 1 boincer umatlas      7986 Oct  9 09:15 run_atlas
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas       105 Oct  9 09:15 job.xml
[2025-10-09 10:28:59] -rw-r--r-- 2 boincer umatlas 221349022 Oct  9 09:15 EVNT.46676267._000609.pool.root.1
[2025-10-09 10:28:59] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 09:15 start_atlas.sh
[2025-10-09 10:28:59] drwxrwx--x 2 boincer umatlas      4096 Oct  9 09:15 shared
[2025-10-09 10:28:59] -rw-r--r-- 2 boincer umatlas    569680 Oct  9 09:15 input.tar.gz
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas         0 Oct  9 09:15 boinc_lockfile
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas      2550 Oct  9 09:15 pandaJob.out
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas    975462 Oct  9 09:15 agis_schedconf.cvmfs.json
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas   1560401 Oct  9 09:15 agis_ddmendpoints.agis.ALL.json
[2025-10-09 10:28:59] drwx------ 5 boincer umatlas      4096 Oct  9 09:15 pilot3
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas 192325216 Oct  9 10:27 HITS.46676269._014860.pool.root.1
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas       530 Oct  9 10:28 boinc_task_state.xml
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas      1049 Oct  9 10:28 memory_monitor_summary.json
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas    374921 Oct  9 10:28 log.46676269._014860.job.log.tgz.1
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas      7855 Oct  9 10:28 heartbeat.json
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas        95 Oct  9 10:28 pilot_heartbeat.json
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas      5952 Oct  9 10:28 init_data.xml
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas      8192 Oct  9 10:28 boinc_mmap_file
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas        27 Oct  9 10:28 wrapper_checkpoint.txt
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas      4818 Oct  9 10:28 pilotlog.txt
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas    631346 Oct  9 10:28 log.46676269._014860.job.log.1
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas       357 Oct  9 10:28 output.list
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas       620 Oct  9 10:28 runtime_log
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas   1024000 Oct  9 10:28 result.tar.gz
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas      8705 Oct  9 10:28 runtime_log.err
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas       659 Oct  9 10:28 NxjNDmBU3Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4QZNDmEuy2an.diag
[2025-10-09 10:28:59] -rw-r--r-- 1 boincer umatlas     22007 Oct  9 10:28 stderr.txt
[2025-10-09 10:28:59] HITS file was successfully produced:
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas 192325216 Oct  9 10:27 shared/HITS.pool.root.1
[2025-10-09 10:28:59]  *** Contents of shared directory: ***
[2025-10-09 10:28:59] total 405564
[2025-10-09 10:28:59] -rw-r--r-- 2 boincer umatlas 221349022 Oct  9 09:15 ATLAS.root_0
[2025-10-09 10:28:59] -rw-r--r-- 2 boincer umatlas     15120 Oct  9 09:15 start_atlas.sh
[2025-10-09 10:28:59] -rw-r--r-- 2 boincer umatlas    569680 Oct  9 09:15 input.tar.gz
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas 192325216 Oct  9 10:27 HITS.pool.root.1
[2025-10-09 10:28:59] -rw------- 1 boincer umatlas   1024000 Oct  9 10:28 result.tar.gz
10:29:01 (25828): run_atlas exited; CPU time 46439.359332
10:29:01 (25828): called boinc_finish(0)

</stderr_txt>
]]>

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