Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:03:03 (332686): wrapper (7.7.26015): starting
12:03:03 (332686): wrapper: running run_atlas (--nthreads 10)
[2025-10-09 12:03:03] Arguments: --nthreads 10
[2025-10-09 12:03:03] Threads: 10
[2025-10-09 12:03:03] Checking for CVMFS
[2025-10-09 12:03:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 12:03:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 12:03:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 12:03:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 12:03:04] 2.13.2.0 4177459 125156 191884 151513 3 510 32409953 32935936 24176 16776704 0 99182453 99.672 84403109 29934 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 12:03:04] CVMFS is ok
[2025-10-09 12:03:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 12:03:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 12:03:04] Further information can be found at the LHC@home message board.
[2025-10-09 12:03:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 12:03:04] Checking for apptainer binary...
[2025-10-09 12:03:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 12:03:04] Running /usr/bin/apptainer --version
[2025-10-09 12:03:04] apptainer version 1.4.3-1.el9
[2025-10-09 12:03:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 12:03:05] c-8-1.aglt2.org
[2025-10-09 12:03:05] apptainer works
[2025-10-09 12:03:05] Set ATHENA_PROC_NUMBER=10
[2025-10-09 12:03:05] Set ATHENA_CORE_NUMBER=10
[2025-10-09 12:03:05] Starting ATLAS job with PandaID=6837328609
[2025-10-09 12:03:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:27:04 (713790): wrapper (7.7.26015): starting
13:27:04 (713790): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 13:27:04] Arguments: --nthreads 8
[2025-10-09 13:27:04] Threads: 8
[2025-10-09 13:27:04] This job has been restarted, cleaning up previous attempt
[2025-10-09 13:27:04] Checking for CVMFS
[2025-10-09 13:27:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 13:27:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 13:27:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 13:27:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 13:27:06] 2.13.2.0 4177459 125240 235756 151515 0 274 18712893 32933038 23923 16776704 0 99731857 99.670 85304830 29884 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 13:27:06] CVMFS is ok
[2025-10-09 13:27:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 13:27:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 13:27:06] Further information can be found at the LHC@home message board.
[2025-10-09 13:27:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 13:27:06] Checking for apptainer binary...
[2025-10-09 13:27:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 13:27:06] Running /usr/bin/apptainer --version
[2025-10-09 13:27:06] apptainer version 1.4.3-1.el9
[2025-10-09 13:27:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 13:27:06] c-8-1.aglt2.org
[2025-10-09 13:27:06] apptainer works
[2025-10-09 13:27:06] Set ATHENA_PROC_NUMBER=8
[2025-10-09 13:27:06] Set ATHENA_CORE_NUMBER=8
[2025-10-09 13:27:06] Starting ATLAS job with PandaID=6837328609
[2025-10-09 13:27:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 23:23:36]  *** The last 200 lines of the pilot log: ***
[2025-10-09 23:23:36] 2025-10-10 03:19:56,955 | INFO     | sum of square deviations: 60814791443.07753
[2025-10-09 23:23:36] 2025-10-10 03:19:56,972 | INFO     | sum of deviations: 140943633016.7607
[2025-10-09 23:23:36] 2025-10-10 03:19:56,972 | INFO     | mean x: 1760048632.6953528
[2025-10-09 23:23:36] 2025-10-10 03:19:56,972 | INFO     | mean y: 2281848.8743545613
[2025-10-09 23:23:36] 2025-10-10 03:19:56,972 | INFO     | -- intersect: -4076785803.77814
[2025-10-09 23:23:36] 2025-10-10 03:19:56,973 | INFO     | intersect: -4076785803.77814
[2025-10-09 23:23:36] 2025-10-10 03:19:56,973 | INFO     | chi2: 3.7067233245666418
[2025-10-09 23:23:36] 2025-10-10 03:19:56,974 | INFO     | sum of square deviations: 59258167576.22227
[2025-10-09 23:23:36] 2025-10-10 03:19:56,998 | INFO     | sum of deviations: 211480722246.08316
[2025-10-09 23:23:36] 2025-10-10 03:19:56,999 | INFO     | mean x: 1760048480.1944444
[2025-10-09 23:23:36] 2025-10-10 03:19:56,999 | INFO     | mean y: 2288724.2135416665
[2025-10-09 23:23:36] 2025-10-10 03:19:56,999 | INFO     | -- intersect: -6278977454.00349
[2025-10-09 23:23:36] 2025-10-10 03:19:56,999 | INFO     | intersect: -6278977454.00349
[2025-10-09 23:23:36] 2025-10-10 03:19:57,000 | INFO     | chi2: 2.1555439440259847
[2025-10-09 23:23:36] 2025-10-10 03:19:57,000 | INFO     | current chi2=2.1555439440259847 (change=41.84772492352144 %)
[2025-10-09 23:23:36] 2025-10-10 03:19:57,001 | INFO     | sum of square deviations: 57728333811.36594
[2025-10-09 23:23:36] 2025-10-10 03:19:57,019 | INFO     | sum of deviations: 209251027866.60596
[2025-10-09 23:23:36] 2025-10-10 03:19:57,019 | INFO     | mean x: 1760048327.69352
[2025-10-09 23:23:36] 2025-10-10 03:19:57,019 | INFO     | mean y: 2288501.5691768825
[2025-10-09 23:23:36] 2025-10-10 03:19:57,019 | INFO     | -- intersect: -6377454292.813332
[2025-10-09 23:23:36] 2025-10-10 03:19:57,019 | INFO     | intersect: -6377454292.813332
[2025-10-09 23:23:36] 2025-10-10 03:19:57,020 | INFO     | chi2: 2.1550397856353403
[2025-10-09 23:23:36] 2025-10-10 03:19:57,021 | INFO     | current chi2=2.1550397856353403 (change=0.023388917309790667 %)
[2025-10-09 23:23:36] 2025-10-10 03:19:57,021 | INFO     | right removable region: 570
[2025-10-09 23:23:36] 2025-10-10 03:19:57,026 | INFO     | sum of square deviations: 59258062290.63886
[2025-10-09 23:23:36] 2025-10-10 03:19:57,046 | INFO     | sum of deviations: 24799865310.479214
[2025-10-09 23:23:36] 2025-10-10 03:19:57,046 | INFO     | mean x: 1760048785.2013888
[2025-10-09 23:23:36] 2025-10-10 03:19:57,046 | INFO     | mean y: 2293204.9010416665
[2025-10-09 23:23:36] 2025-10-10 03:19:57,046 | INFO     | -- intersect: -734298089.6098208
[2025-10-09 23:23:36] 2025-10-10 03:19:57,047 | INFO     | intersect: -734298089.6098208
[2025-10-09 23:23:36] 2025-10-10 03:19:57,047 | INFO     | chi2: 1.7754652093455987
[2025-10-09 23:23:36] 2025-10-10 03:19:57,048 | INFO     | current chi2=1.7754652093455987 (change=52.10149088877113 %)
[2025-10-09 23:23:36] 2025-10-10 03:19:57,053 | INFO     | sum of square deviations: 57728124338.15753
[2025-10-09 23:23:36] 2025-10-10 03:19:57,067 | INFO     | sum of deviations: -9541097587.259151
[2025-10-09 23:23:36] 2025-10-10 03:19:57,067 | INFO     | mean x: 1760048937.7075307
[2025-10-09 23:23:36] 2025-10-10 03:19:57,067 | INFO     | mean y: 2296623.5253940457
[2025-10-09 23:23:36] 2025-10-10 03:19:57,067 | INFO     | -- intersect: 293191206.80773246
[2025-10-09 23:23:36] 2025-10-10 03:19:57,067 | INFO     | intersect: 293191206.80773246
[2025-10-09 23:23:36] 2025-10-10 03:19:57,068 | INFO     | chi2: 1.6250931538303872
[2025-10-09 23:23:36] 2025-10-10 03:19:57,068 | INFO     | current chi2=1.6250931538303872 (change=8.469445344447816 %)
[2025-10-09 23:23:36] 2025-10-10 03:19:57,073 | INFO     | left removable region: 20
[2025-10-09 23:23:36] 2025-10-10 03:19:57,074 | INFO     | sum of square deviations: 51590169362.95453
[2025-10-09 23:23:36] 2025-10-10 03:19:57,068 | INFO     | monitor loop #2059: job 0:6837328609 is in state 'finished'
[2025-10-09 23:23:36] 2025-10-10 03:19:57,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 23:23:36] 2025-10-10 03:19:57,090 | INFO     | sum of deviations: 55233586590.76355
[2025-10-09 23:23:36] 2025-10-10 03:19:57,091 | INFO     | mean x: 1760048907.209091
[2025-10-09 23:23:36] 2025-10-10 03:19:57,091 | INFO     | mean y: 2304171.5672727274
[2025-10-09 23:23:36] 2025-10-10 03:19:57,091 | INFO     | -- intersect: -1882043465.2156107
[2025-10-09 23:23:36] 2025-10-10 03:19:57,091 | INFO     | intersect: -1882043465.2156107
[2025-10-09 23:23:36] 2025-10-10 03:19:57,092 | INFO     | chi2: 0.05440268671877973
[2025-10-09 23:23:36] 2025-10-10 03:19:57,092 | INFO     | -- intersect: -1882043465.2156107
[2025-10-09 23:23:36] 2025-10-10 03:19:57,092 | INFO     | current memory leak: 1.07 B/s (using 550 data points, chi2=0.05)
[2025-10-09 23:23:36] 2025-10-10 03:19:57,097 | INFO     | could have reported an average CPU frequency of 2600 MHz (23 samples)
[2025-10-09 23:23:36] 2025-10-10 03:19:57,097 | INFO     | ..............................
[2025-10-09 23:23:36] 2025-10-10 03:19:57,098 | INFO     | . Timing measurements:
[2025-10-09 23:23:36] 2025-10-10 03:19:57,098 | INFO     | . get job = 0 s
[2025-10-09 23:23:36] 2025-10-10 03:19:57,098 | INFO     | . initial setup = 2 s
[2025-10-09 23:23:36] 2025-10-10 03:19:57,098 | INFO     | . payload setup = 20 s
[2025-10-09 23:23:36] 2025-10-10 03:19:57,098 | INFO     | . stage-in = 0 s
[2025-10-09 23:23:36] 2025-10-10 03:19:57,098 | INFO     | . payload execution = 35438 s
[2025-10-09 23:23:36] 2025-10-10 03:19:57,098 | INFO     | . stage-out = 4 s
[2025-10-09 23:23:36] 2025-10-10 03:19:57,098 | INFO     | . log creation = 1 s
[2025-10-09 23:23:36] 2025-10-10 03:19:57,098 | INFO     | ..............................
[2025-10-09 23:23:36] 2025-10-10 03:19:57,577 | INFO     | 
[2025-10-09 23:23:36] 2025-10-10 03:19:57,578 | INFO     | job summary report
[2025-10-09 23:23:36] 2025-10-10 03:19:57,578 | INFO     | --------------------------------------------------
[2025-10-09 23:23:36] 2025-10-10 03:19:57,578 | INFO     | PanDA job id: 6837328609
[2025-10-09 23:23:36] 2025-10-10 03:19:57,578 | INFO     | task id: 46676269
[2025-10-09 23:23:36] 2025-10-10 03:19:57,578 | INFO     | errors: (none)
[2025-10-09 23:23:36] 2025-10-10 03:19:57,578 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 23:23:36] 2025-10-10 03:19:57,578 | INFO     | pilot state: finished 
[2025-10-09 23:23:36] 2025-10-10 03:19:57,579 | INFO     | transexitcode: 0
[2025-10-09 23:23:36] 2025-10-10 03:19:57,579 | INFO     | exeerrorcode: 0
[2025-10-09 23:23:36] 2025-10-10 03:19:57,579 | INFO     | exeerrordiag: 
[2025-10-09 23:23:36] 2025-10-10 03:19:57,579 | INFO     | exitcode: 0
[2025-10-09 23:23:36] 2025-10-10 03:19:57,579 | INFO     | exitmsg: OK
[2025-10-09 23:23:36] 2025-10-10 03:19:57,579 | INFO     | cpuconsumptiontime: 50253 s
[2025-10-09 23:23:36] 2025-10-10 03:19:57,579 | INFO     | nevents: 400
[2025-10-09 23:23:36] 2025-10-10 03:19:57,579 | INFO     | neventsw: 0
[2025-10-09 23:23:36] 2025-10-10 03:19:57,579 | INFO     | pid: 744233
[2025-10-09 23:23:36] 2025-10-10 03:19:57,579 | INFO     | pgrp: 744233
[2025-10-09 23:23:36] 2025-10-10 03:19:57,580 | INFO     | corecount: 8
[2025-10-09 23:23:36] 2025-10-10 03:19:57,580 | INFO     | event service: False
[2025-10-09 23:23:36] 2025-10-10 03:19:57,580 | INFO     | sizes: {0: 2348684, 1: 2348883, 12: 2348883, 16: 2349173, 23: 2349201, 35464: 2389417, 35465: 2389544, 35470: 2398598, 35474: 2398654, 35501: 2398848}
[2025-10-09 23:23:36] 2025-10-10 03:19:57,580 | INFO     | --------------------------------------------------
[2025-10-09 23:23:36] 2025-10-10 03:19:57,580 | INFO     | 
[2025-10-09 23:23:36] 2025-10-10 03:19:57,580 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-09 23:23:36] 2025-10-10 03:19:57,757 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,757 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,757 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,764 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,764 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,764 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,764 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,764 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,764 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,764 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,764 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,765 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,765 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,765 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,765 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,765 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,765 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,765 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 23:23:36] 2025-10-10 03:19:57,765 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,766 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 23:23:36] 2025-10-10 03:19:57,766 | INFO     | job 6837328609 has completed (purged errors)
[2025-10-09 23:23:36] 2025-10-10 03:19:57,766 | INFO     | overall cleanup function is called
[2025-10-09 23:23:36] 2025-10-10 03:19:58,800 | INFO     | --- collectZombieJob: --- 10, [744233]
[2025-10-09 23:23:36] 2025-10-10 03:19:58,801 | INFO     | zombie collector waiting for pid 744233
[2025-10-09 23:23:36] 2025-10-10 03:19:58,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 23:23:36] 2025-10-10 03:19:58,801 | INFO     | collected zombie processes
[2025-10-09 23:23:36] 2025-10-10 03:19:58,801 | INFO     | will attempt to kill all subprocesses of pid=744233
[2025-10-09 23:23:36] 2025-10-10 03:20:00,780 | INFO     | process IDs to be killed: [744233] (in reverse order)
[2025-10-09 23:23:36] 2025-10-10 03:20:00,927 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 23:23:36] 2025-10-10 03:20:00,928 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 23:23:36] 2025-10-10 03:20:00,988 | INFO     | did not find any defunct processes belonging to 744233
[2025-10-09 23:23:36] 2025-10-10 03:20:01,059 | INFO     | did not find any defunct processes belonging to 744233
[2025-10-09 23:23:36] 2025-10-10 03:20:01,065 | INFO     | ready for new job
[2025-10-09 23:23:36] 2025-10-10 03:20:01,065 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 23:23:36] 2025-10-10 03:20:01,084 | INFO     | ***************************************
[2025-10-09 23:23:36] 2025-10-10 03:20:01,084 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-09 23:23:36] 2025-10-10 03:20:01,084 | INFO     | ***************************************
[2025-10-09 23:23:36] 2025-10-10 03:20:01,088 | INFO     | 
[2025-10-09 23:23:36] 2025-10-10 03:20:01,105 | INFO     | architecture information:
[2025-10-09 23:23:36] 2025-10-10 03:20:01,105 | INFO     | executing command: cat /etc/os-release
[2025-10-09 23:23:36] 2025-10-10 03:20:01,262 | INFO     | cat /etc/os-release:
[2025-10-09 23:23:36] NAME="CentOS Linux"
[2025-10-09 23:23:36] VERSION="7 (Core)"
[2025-10-09 23:23:36] ID="centos"
[2025-10-09 23:23:36] ID_LIKE="rhel fedora"
[2025-10-09 23:23:36] VERSION_ID="7"
[2025-10-09 23:23:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 23:23:36] ANSI_COLOR="0;31"
[2025-10-09 23:23:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 23:23:36] HOME_URL="https://www.centos.org/"
[2025-10-09 23:23:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 23:23:36] 
[2025-10-09 23:23:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 23:23:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 23:23:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 23:23:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 23:23:36] 
[2025-10-09 23:23:36] 2025-10-10 03:20:01,262 | INFO     | ***************************************
[2025-10-09 23:23:36] 2025-10-10 03:20:01,766 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-09 23:23:36] 2025-10-10 03:20:01,982 | INFO     | sufficient remaining disk space (75658952704 B)
[2025-10-09 23:23:36] 2025-10-10 03:20:01,982 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 23:23:36] 2025-10-10 03:20:01,982 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 23:23:36] 2025-10-10 03:20:01,983 | INFO     | update_server=False
[2025-10-09 23:23:36] 2025-10-10 03:20:01,983 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 23:23:36] 2025-10-10 03:20:01,998 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 23:23:36] 2025-10-10 03:20:02,171 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-09 23:23:36] 2025-10-10 03:20:02,172 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-09 23:23:36] 2025-10-10 03:20:02,178 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 23:23:36] 2025-10-10 03:20:02,178 | INFO     | will abort loop
[2025-10-09 23:23:36] 2025-10-10 03:20:02,310 | INFO     | all data control threads have been joined
[2025-10-09 23:23:36] 2025-10-10 03:20:02,357 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 23:23:36] 2025-10-10 03:20:02,504 | INFO     | all job control threads have been joined
[2025-10-09 23:23:36] 2025-10-10 03:20:02,736 | INFO     | all payload control threads have been joined
[2025-10-09 23:23:36] 2025-10-10 03:20:02,993 | INFO     | [job] retrieve thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:03,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 23:23:36] 2025-10-10 03:20:03,185 | INFO     | [job] job monitor thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:03,316 | INFO     | [data] control thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:03,364 | INFO     | [job] queue monitor thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:03,510 | INFO     | [job] control thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:03,578 | INFO     | [payload] failed_post thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:03,628 | INFO     | [data] copytool_in thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:03,628 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:03,629 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:03,682 | INFO     | [job] validate thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:03,743 | INFO     | [payload] control thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:03,947 | INFO     | [payload] validate_post thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:03,994 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:04,013 | INFO     | [data] copytool_out thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:04,246 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:07,162 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 23:23:36] 2025-10-10 03:20:30,549 | INFO     | PID=725830 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-09 23:23:36] 2025-10-10 03:20:30,550 | INFO     | .. there are 40 such processes running
[2025-10-09 23:23:36] 2025-10-10 03:20:30,550 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 23:23:36] 2025-10-10 03:20:30,551 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 23:23:36] 2025-10-10 03:20:30,551 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 23:23:36] 2025-10-10 03:20:42,690 | INFO     | [monitor] cgroup control has ended
[2025-10-09 23:23:36] 2025-10-10 03:20:43,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140438944720704)>', '<ExcThread(monitor, started 140438291859200)>']
[2025-10-09 23:23:36] 2025-10-10 03:20:43,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 23:23:36] 2025-10-10 03:20:43,634 | INFO     | [monitor] control thread has ended
[2025-10-09 23:23:36] 2025-10-10 03:20:48,519 | INFO     | all workflow threads have been joined
[2025-10-09 23:23:36] 2025-10-10 03:20:48,520 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 23:23:36] 2025-10-10 03:20:48,520 | INFO     | traces error code: 0
[2025-10-09 23:23:36] 2025-10-10 03:20:48,521 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 23:23:36] 2025-10-10 03:20:49,938 [wrapper] ==== pilot stdout END ====
[2025-10-09 23:23:36] 2025-10-10 03:20:49,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 23:23:36] 2025-10-10 03:20:49,981 [wrapper] pilotpid: 725830
[2025-10-09 23:23:36] 2025-10-10 03:20:50,023 [wrapper] Pilot exit status: 0
[2025-10-09 23:23:36] 2025-10-10 03:20:50,275 [wrapper] pandaids: 6837328609 6837328609
[2025-10-09 23:23:36] 2025-10-10 03:20:51,188 [wrapper] cleanup supervisor_pilot 2300548 725831
[2025-10-09 23:23:36] 2025-10-10 03:20:51,207 [wrapper] Test setup, not cleaning
[2025-10-09 23:23:36] 2025-10-10 03:20:51,219 [wrapper] apfmon messages muted
[2025-10-09 23:23:36] 2025-10-10 03:20:51,222 [wrapper] ==== wrapper stdout END ====
[2025-10-09 23:23:36] 2025-10-10 03:20:51,224 [wrapper] ==== wrapper stderr END ====
[2025-10-09 23:23:36]  *** Error codes and diagnostics ***
[2025-10-09 23:23:36]     "exeErrorCode": 0,
[2025-10-09 23:23:36]     "exeErrorDiag": "",
[2025-10-09 23:23:36]     "pilotErrorCode": 0,
[2025-10-09 23:23:36]     "pilotErrorDiag": "",
[2025-10-09 23:23:36]  *** Listing of results directory ***
[2025-10-09 23:23:36] total 640316
[2025-10-09 23:23:36] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 06:27 pilot3.tar.gz
[2025-10-09 23:23:36] -rwx------. 1 boincer umatlas     36292 Oct  9 06:46 runpilot2-wrapper.sh
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 06:48 queuedata.json
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas       100 Oct  9 12:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 23:23:36] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 12:03 run_atlas
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas       105 Oct  9 12:03 job.xml
[2025-10-09 23:23:36] -rw-r--r--. 3 boincer umatlas 223307877 Oct  9 12:03 EVNT.46676267._000568.pool.root.1
[2025-10-09 23:23:36] -rw-r--r--. 3 boincer umatlas 223307877 Oct  9 12:03 ATLAS.root_0
[2025-10-09 23:23:36] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 12:03 start_atlas.sh
[2025-10-09 23:23:36] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 12:03 shared
[2025-10-09 23:23:36] -rw-r--r--. 2 boincer umatlas    569681 Oct  9 12:03 input.tar.gz
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas         0 Oct  9 12:03 boinc_lockfile
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas      2549 Oct  9 13:27 pandaJob.out
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas    975446 Oct  9 13:27 agis_schedconf.cvmfs.json
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas 195059566 Oct  9 23:17 HITS.46676269._013872.pool.root.1
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas       531 Oct  9 23:17 boinc_task_state.xml
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas      1056 Oct  9 23:19 memory_monitor_summary.json
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas   1560580 Oct  9 23:19 agis_ddmendpoints.agis.ALL.json
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas    736674 Oct  9 23:19 log.46676269._013872.job.log.tgz.1
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas      7848 Oct  9 23:19 heartbeat.json
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas        96 Oct  9 23:19 pilot_heartbeat.json
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas      5009 Oct  9 23:20 pilotlog.txt
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas   4310544 Oct  9 23:20 log.46676269._013872.job.log.1
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas       357 Oct  9 23:20 output.list
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas       620 Oct  9 23:20 runtime_log
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas   5068800 Oct  9 23:20 result.tar.gz
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas      8774 Oct  9 23:20 runtime_log.err
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas       786 Oct  9 23:20 gFUNDmdL3Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmuXNMDmpHydYn.diag
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas      6658 Oct  9 23:22 init_data.xml
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 23:23 boinc_mmap_file
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas     23274 Oct  9 23:23 stderr.txt
[2025-10-09 23:23:36] -rw-r--r--. 1 boincer umatlas        28 Oct  9 23:23 wrapper_checkpoint.txt
[2025-10-09 23:23:36] HITS file was successfully produced:
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas 195059566 Oct  9 23:17 shared/HITS.pool.root.1
[2025-10-09 23:23:36]  *** Contents of shared directory: ***
[2025-10-09 23:23:36] total 414100
[2025-10-09 23:23:36] -rw-r--r--. 3 boincer umatlas 223307877 Oct  9 12:03 ATLAS.root_0
[2025-10-09 23:23:36] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 12:03 start_atlas.sh
[2025-10-09 23:23:36] -rw-r--r--. 2 boincer umatlas    569681 Oct  9 12:03 input.tar.gz
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas 195059566 Oct  9 23:17 HITS.pool.root.1
[2025-10-09 23:23:36] -rw-------. 1 boincer umatlas   5068800 Oct  9 23:20 result.tar.gz
23:23:38 (713790): run_atlas exited; CPU time 51589.527789
23:23:38 (713790): called boinc_finish(0)

</stderr_txt>
]]>

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