Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:22:25 (942196): wrapper (7.7.26015): starting
09:22:25 (942196): wrapper: running run_atlas (--nthreads 8)
[2025-10-09 09:22:25] Arguments: --nthreads 8
[2025-10-09 09:22:25] Threads: 8
[2025-10-09 09:22:25] Checking for CVMFS
[2025-10-09 09:22:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 09:22:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 09:22:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 09:22:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 09:22:26] 2.13.2.0 231297 48394 356732 151513 0 303 31524720 40960000 18723 16776704 0 121480460 99.628 120370143 29421 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-09 09:22:26] CVMFS is ok
[2025-10-09 09:22:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-09 09:22:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-09 09:22:26] Further information can be found at the LHC@home message board.
[2025-10-09 09:22:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 09:22:26] Checking for apptainer binary...
[2025-10-09 09:22:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 09:22:26] Running /usr/bin/apptainer --version
[2025-10-09 09:22:26] apptainer version 1.4.3-1.el9
[2025-10-09 09:22:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 09:22:27] c6-5-7-4.aglt2.org
[2025-10-09 09:22:27] apptainer works
[2025-10-09 09:22:27] Set ATHENA_PROC_NUMBER=8
[2025-10-09 09:22:27] Set ATHENA_CORE_NUMBER=8
[2025-10-09 09:22:27] Starting ATLAS job with PandaID=6831073668
[2025-10-09 09:22:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 18:58:59]  *** The last 200 lines of the pilot log: ***
[2025-10-09 18:58:59] 2025-10-09 22:58:22,822 | INFO     | PID=946804 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-09 18:58:59] 2025-10-09 22:58:22,823 | INFO     | .. there are 21 such processes running
[2025-10-09 18:58:59] 2025-10-09 22:58:23,824 | INFO     | time since job start (34531s) is within the limit (172800.0s)
[2025-10-09 18:58:59] 2025-10-09 22:58:24,159 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-09 18:58:59] 2025-10-09 22:58:24,166 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2673.4738392857143
[2025-10-09 18:58:59] 2025-10-09 22:58:24,175 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6831073668/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 18:58:59] 2025-10-09 22:58:24,176 | INFO     | extracted standard info from prmon json
[2025-10-09 18:58:59] 2025-10-09 22:58:24,176 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 18:58:59] 2025-10-09 22:58:24,176 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 18:58:59] 2025-10-09 22:58:24,176 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 18:58:59] 2025-10-09 22:58:24,176 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 18:58:59] 2025-10-09 22:58:24,185 | INFO     | fitting pss+swap vs Time
[2025-10-09 18:58:59] 2025-10-09 22:58:24,186 | INFO     | sum of square deviations: 55927503128.786354
[2025-10-09 18:58:59] 2025-10-09 22:58:24,194 | INFO     | sum of deviations: -509001425267.9518
[2025-10-09 18:58:59] 2025-10-09 22:58:24,194 | INFO     | mean x: 1760033433.219469
[2025-10-09 18:58:59] 2025-10-09 22:58:24,194 | INFO     | mean y: 2631585.9592920355
[2025-10-09 18:58:59] 2025-10-09 22:58:24,194 | INFO     | -- intersect: 16020860112.361177
[2025-10-09 18:58:59] 2025-10-09 22:58:24,194 | INFO     | intersect: 16020860112.361177
[2025-10-09 18:58:59] 2025-10-09 22:58:24,195 | INFO     | chi2: 5.534633372598346
[2025-10-09 18:58:59] 2025-10-09 22:58:24,196 | INFO     | sum of square deviations: 54455848238.54294
[2025-10-09 18:58:59] 2025-10-09 22:58:24,204 | INFO     | sum of deviations: -464589399815.91455
[2025-10-09 18:58:59] 2025-10-09 22:58:24,204 | INFO     | mean x: 1760033280.7214286
[2025-10-09 18:58:59] 2025-10-09 22:58:24,204 | INFO     | mean y: 2636161.442857143
[2025-10-09 18:58:59] 2025-10-09 22:58:24,204 | INFO     | -- intersect: 15018338459.651747
[2025-10-09 18:58:59] 2025-10-09 22:58:24,204 | INFO     | intersect: 15018338459.651747
[2025-10-09 18:58:59] 2025-10-09 22:58:24,205 | INFO     | chi2: 4.860428760998627
[2025-10-09 18:58:59] 2025-10-09 22:58:24,205 | INFO     | current chi2=4.860428760998627 (change=12.181558672660548 %)
[2025-10-09 18:58:59] 2025-10-09 22:58:24,205 | INFO     | right removable region: 559
[2025-10-09 18:58:59] 2025-10-09 22:58:24,206 | INFO     | sum of square deviations: 54455772598.54293
[2025-10-09 18:58:59] 2025-10-09 22:58:24,214 | INFO     | sum of deviations: -668050018970.5498
[2025-10-09 18:58:59] 2025-10-09 22:58:24,214 | INFO     | mean x: 1760033585.7214286
[2025-10-09 18:58:59] 2025-10-09 22:58:24,214 | INFO     | mean y: 2648048.8875
[2025-10-09 18:58:59] 2025-10-09 22:58:24,214 | INFO     | -- intersect: 21594307008.501007
[2025-10-09 18:58:59] 2025-10-09 22:58:24,214 | INFO     | intersect: 21594307008.501007
[2025-10-09 18:58:59] 2025-10-09 22:58:24,215 | INFO     | chi2: 2.6892940384178754
[2025-10-09 18:58:59] 2025-10-09 22:58:24,215 | INFO     | current chi2=2.6892940384178754 (change=51.40971664478416 %)
[2025-10-09 18:58:59] 2025-10-09 22:58:24,216 | INFO     | sum of square deviations: 53010122983.74009
[2025-10-09 18:58:59] 2025-10-09 22:58:24,223 | INFO     | sum of deviations: -727829341083.8969
[2025-10-09 18:58:59] 2025-10-09 22:58:24,225 | INFO     | mean x: 1760033738.2216215
[2025-10-09 18:58:59] 2025-10-09 22:58:24,225 | INFO     | mean y: 2654345.308108108
[2025-10-09 18:58:59] 2025-10-09 22:58:24,225 | INFO     | -- intersect: 24167929275.30961
[2025-10-09 18:58:59] 2025-10-09 22:58:24,225 | INFO     | intersect: 24167929275.30961
[2025-10-09 18:58:59] 2025-10-09 22:58:24,226 | INFO     | chi2: 2.122853530950752
[2025-10-09 18:58:59] 2025-10-09 22:58:24,226 | INFO     | current chi2=2.122853530950752 (change=21.06279563986849 %)
[2025-10-09 18:58:59] 2025-10-09 22:58:24,226 | INFO     | left removable region: 20
[2025-10-09 18:58:59] 2025-10-09 22:58:24,227 | INFO     | sum of square deviations: 48556353771.836685
[2025-10-09 18:58:59] 2025-10-09 22:58:24,233 | INFO     | sum of deviations: -712106981074.4697
[2025-10-09 18:58:59] 2025-10-09 22:58:24,233 | INFO     | mean x: 1760033860.2244897
[2025-10-09 18:58:59] 2025-10-09 22:58:24,233 | INFO     | mean y: 2662926.6567717995
[2025-10-09 18:58:59] 2025-10-09 22:58:24,233 | INFO     | -- intersect: 25814576331.08245
[2025-10-09 18:58:59] 2025-10-09 22:58:24,233 | INFO     | intersect: 25814576331.08245
[2025-10-09 18:58:59] 2025-10-09 22:58:24,234 | INFO     | chi2: 1.192078344255073
[2025-10-09 18:58:59] 2025-10-09 22:58:24,234 | INFO     | -- intersect: 25814576331.08245
[2025-10-09 18:58:59] 2025-10-09 22:58:24,234 | INFO     | current memory leak: -14.67 B/s (using 539 data points, chi2=1.19)
[2025-10-09 18:58:59] 2025-10-09 22:58:24,235 | INFO     | could have reported an average CPU frequency of 2930 MHz (22 samples)
[2025-10-09 18:58:59] 2025-10-09 22:58:24,235 | INFO     | ..............................
[2025-10-09 18:58:59] 2025-10-09 22:58:24,235 | INFO     | . Timing measurements:
[2025-10-09 18:58:59] 2025-10-09 22:58:24,235 | INFO     | . get job = 0 s
[2025-10-09 18:58:59] 2025-10-09 22:58:24,235 | INFO     | . initial setup = 3 s
[2025-10-09 18:58:59] 2025-10-09 22:58:24,235 | INFO     | . payload setup = 14 s
[2025-10-09 18:58:59] 2025-10-09 22:58:24,235 | INFO     | . stage-in = 0 s
[2025-10-09 18:58:59] 2025-10-09 22:58:24,235 | INFO     | . payload execution = 34446 s
[2025-10-09 18:58:59] 2025-10-09 22:58:24,235 | INFO     | . stage-out = 6 s
[2025-10-09 18:58:59] 2025-10-09 22:58:24,235 | INFO     | . log creation = 1 s
[2025-10-09 18:58:59] 2025-10-09 22:58:24,235 | INFO     | ..............................
[2025-10-09 18:58:59] 2025-10-09 22:58:24,686 | INFO     | 
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | job summary report
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | --------------------------------------------------
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | PanDA job id: 6831073668
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | task id: 46373048
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | errors: (none)
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | pilot state: finished 
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | transexitcode: 0
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | exeerrorcode: 0
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | exeerrordiag: 
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | exitcode: 0
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | exitmsg: OK
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | cpuconsumptiontime: 51244 s
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | nevents: 400
[2025-10-09 18:58:59] 2025-10-09 22:58:24,687 | INFO     | neventsw: 0
[2025-10-09 18:58:59] 2025-10-09 22:58:24,688 | INFO     | pid: 957145
[2025-10-09 18:58:59] 2025-10-09 22:58:24,688 | INFO     | pgrp: 957145
[2025-10-09 18:58:59] 2025-10-09 22:58:24,688 | INFO     | corecount: 8
[2025-10-09 18:58:59] 2025-10-09 22:58:24,688 | INFO     | event service: False
[2025-10-09 18:58:59] 2025-10-09 22:58:24,688 | INFO     | sizes: {0: 2348563, 1: 2348818, 12: 2348818, 17: 2349108, 23: 2349136, 34465: 2389287, 34473: 2398285, 34474: 2398341, 34500: 2398535}
[2025-10-09 18:58:59] 2025-10-09 22:58:24,688 | INFO     | --------------------------------------------------
[2025-10-09 18:58:59] 2025-10-09 22:58:24,688 | INFO     | 
[2025-10-09 18:58:59] 2025-10-09 22:58:24,688 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-09 18:58:59] 2025-10-09 22:58:24,897 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,897 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,897 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,897 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,897 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,897 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,898 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 18:58:59] 2025-10-09 22:58:24,899 | INFO     | job 6831073668 has completed (purged errors)
[2025-10-09 18:58:59] 2025-10-09 22:58:24,899 | INFO     | overall cleanup function is called
[2025-10-09 18:58:59] 2025-10-09 22:58:25,908 | INFO     | --- collectZombieJob: --- 10, [957145]
[2025-10-09 18:58:59] 2025-10-09 22:58:25,908 | INFO     | zombie collector waiting for pid 957145
[2025-10-09 18:58:59] 2025-10-09 22:58:25,908 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 18:58:59] 2025-10-09 22:58:25,908 | INFO     | collected zombie processes
[2025-10-09 18:58:59] 2025-10-09 22:58:25,908 | INFO     | will attempt to kill all subprocesses of pid=957145
[2025-10-09 18:58:59] 2025-10-09 22:58:27,780 | INFO     | process IDs to be killed: [957145] (in reverse order)
[2025-10-09 18:58:59] 2025-10-09 22:58:27,915 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 18:58:59] 2025-10-09 22:58:27,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 18:58:59] 2025-10-09 22:58:27,933 | INFO     | did not find any defunct processes belonging to 957145
[2025-10-09 18:58:59] 2025-10-09 22:58:27,945 | INFO     | did not find any defunct processes belonging to 957145
[2025-10-09 18:58:59] 2025-10-09 22:58:27,945 | INFO     | ready for new job
[2025-10-09 18:58:59] 2025-10-09 22:58:27,946 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 18:58:59] 2025-10-09 22:58:27,948 | INFO     | ***************************************
[2025-10-09 18:58:59] 2025-10-09 22:58:27,950 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-09 18:58:59] 2025-10-09 22:58:27,950 | INFO     | ***************************************
[2025-10-09 18:58:59] 2025-10-09 22:58:27,950 | INFO     | 
[2025-10-09 18:58:59] 2025-10-09 22:58:27,953 | INFO     | architecture information:
[2025-10-09 18:58:59] 2025-10-09 22:58:27,953 | INFO     | executing command: cat /etc/os-release
[2025-10-09 18:58:59] 2025-10-09 22:58:27,973 | INFO     | cat /etc/os-release:
[2025-10-09 18:58:59] NAME="CentOS Linux"
[2025-10-09 18:58:59] VERSION="7 (Core)"
[2025-10-09 18:58:59] ID="centos"
[2025-10-09 18:58:59] ID_LIKE="rhel fedora"
[2025-10-09 18:58:59] VERSION_ID="7"
[2025-10-09 18:58:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 18:58:59] ANSI_COLOR="0;31"
[2025-10-09 18:58:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 18:58:59] HOME_URL="https://www.centos.org/"
[2025-10-09 18:58:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 18:58:59] 
[2025-10-09 18:58:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 18:58:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 18:58:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 18:58:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 18:58:59] 
[2025-10-09 18:58:59] 2025-10-09 22:58:27,973 | INFO     | ***************************************
[2025-10-09 18:58:59] 2025-10-09 22:58:28,477 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-09 18:58:59] 2025-10-09 22:58:28,536 | INFO     | sufficient remaining disk space (74767663104 B)
[2025-10-09 18:58:59] 2025-10-09 22:58:28,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 18:58:59] 2025-10-09 22:58:28,536 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 18:58:59] 2025-10-09 22:58:28,536 | INFO     | update_server=False
[2025-10-09 18:58:59] 2025-10-09 22:58:28,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 18:58:59] 2025-10-09 22:58:28,537 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 18:58:59] 2025-10-09 22:58:28,537 | INFO     | aborting loop
[2025-10-09 18:58:59] 2025-10-09 22:58:28,603 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 18:58:59] 2025-10-09 22:58:29,144 | INFO     | all data control threads have been joined
[2025-10-09 18:58:59] 2025-10-09 22:58:29,445 | INFO     | all payload control threads have been joined
[2025-10-09 18:58:59] 2025-10-09 22:58:29,542 | INFO     | [job] retrieve thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:29,543 | INFO     | [job] job monitor thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:29,715 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 18:58:59] 2025-10-09 22:58:29,927 | INFO     | all job control threads have been joined
[2025-10-09 18:58:59] 2025-10-09 22:58:30,028 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:30,030 | INFO     | [payload] failed_post thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:30,035 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:30,074 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:30,131 | INFO     | [job] validate thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:30,150 | INFO     | [data] control thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:30,456 | INFO     | [payload] control thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:30,587 | INFO     | [data] copytool_in thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:30,614 | INFO     | [data] copytool_out thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:30,695 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:30,701 | INFO     | [payload] validate_post thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:30,721 | INFO     | [job] queue monitor thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:30,933 | INFO     | [job] control thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:31,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 18:58:59] 2025-10-09 22:58:35,740 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 18:58:59] 2025-10-09 22:58:51,561 | INFO     | [monitor] cgroup control has ended
[2025-10-09 18:58:59] 2025-10-09 22:58:51,606 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139725603813184)>', '<ExcThread(monitor, started 139724723308288)>']
[2025-10-09 18:58:59] 2025-10-09 22:58:56,632 | INFO     | all workflow threads have been joined
[2025-10-09 18:58:59] 2025-10-09 22:58:56,632 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 18:58:59] 2025-10-09 22:58:56,632 | INFO     | traces error code: 0
[2025-10-09 18:58:59] 2025-10-09 22:58:56,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 18:58:59] 2025-10-09 22:58:57,805 | INFO     | PID=946804 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-09 18:58:59] 2025-10-09 22:58:57,805 | INFO     | .. there are 21 such processes running
[2025-10-09 18:58:59] 2025-10-09 22:58:57,806 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 18:58:59] 2025-10-09 22:58:57,806 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 18:58:59] 2025-10-09 22:58:57,806 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 18:58:59] 2025-10-09 22:58:57,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 18:58:59] 2025-10-09 22:58:57,807 | INFO     | [monitor] control thread has ended
[2025-10-09 18:58:59] 2025-10-09 22:58:58,018 [wrapper] ==== pilot stdout END ====
[2025-10-09 18:58:59] 2025-10-09 22:58:58,032 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 18:58:59] 2025-10-09 22:58:58,067 [wrapper] pilotpid: 946804
[2025-10-09 18:58:59] 2025-10-09 22:58:58,113 [wrapper] Pilot exit status: 0
[2025-10-09 18:58:59] 2025-10-09 22:58:58,262 [wrapper] pandaids: 6831073668
[2025-10-09 18:58:59] 2025-10-09 22:58:58,459 [wrapper] cleanup supervisor_pilot 2805104 946805
[2025-10-09 18:58:59] 2025-10-09 22:58:58,465 [wrapper] Test setup, not cleaning
[2025-10-09 18:58:59] 2025-10-09 22:58:58,468 [wrapper] apfmon messages muted
[2025-10-09 18:58:59] 2025-10-09 22:58:58,471 [wrapper] ==== wrapper stdout END ====
[2025-10-09 18:58:59] 2025-10-09 22:58:58,473 [wrapper] ==== wrapper stderr END ====
[2025-10-09 18:58:59]  *** Error codes and diagnostics ***
[2025-10-09 18:58:59]     "exeErrorCode": 0,
[2025-10-09 18:58:59]     "exeErrorDiag": "",
[2025-10-09 18:58:59]     "pilotErrorCode": 0,
[2025-10-09 18:58:59]     "pilotErrorDiag": "",
[2025-10-09 18:58:59]  *** Listing of results directory ***
[2025-10-09 18:58:59] total 417616
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas    552446 Oct  5 02:36 pilot3.tar.gz
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 02:42 queuedata.json
[2025-10-09 18:58:59] -rwx------. 1 boincer umatlas     36292 Oct  5 02:42 runpilot2-wrapper.sh
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas       100 Oct  9 09:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 18:58:59] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  9 09:22 run_atlas
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas       105 Oct  9 09:22 job.xml
[2025-10-09 18:58:59] -rw-r--r--. 2 boincer umatlas 220844123 Oct  9 09:22 EVNT.46373045._003113.pool.root.1
[2025-10-09 18:58:59] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 09:22 start_atlas.sh
[2025-10-09 18:58:59] drwxrwx--x. 2 boincer umatlas      4096 Oct  9 09:22 shared
[2025-10-09 18:58:59] -rw-r--r--. 2 boincer umatlas    565610 Oct  9 09:22 input.tar.gz
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas         0 Oct  9 09:22 boinc_lockfile
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas      2537 Oct  9 09:22 pandaJob.out
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas    975462 Oct  9 09:22 agis_schedconf.cvmfs.json
[2025-10-09 18:58:59] drwx------. 4 boincer umatlas      4096 Oct  9 09:22 pilot3
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas      6842 Oct  9 18:55 init_data.xml
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas 192729332 Oct  9 18:56 HITS.46373048._097122.pool.root.1
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas       531 Oct  9 18:57 boinc_task_state.xml
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas      1042 Oct  9 18:57 memory_monitor_summary.json
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas   1560401 Oct  9 18:57 agis_ddmendpoints.agis.ALL.json
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas    731645 Oct  9 18:57 log.46373048._097122.job.log.tgz.1
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas      7831 Oct  9 18:58 heartbeat.json
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas        28 Oct  9 18:58 wrapper_checkpoint.txt
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas       822 Oct  9 18:58 pilotlog.txt
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas        95 Oct  9 18:58 pilot_heartbeat.json
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas      8192 Oct  9 18:58 boinc_mmap_file
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas   4358111 Oct  9 18:58 log.46373048._097122.job.log.1
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas       357 Oct  9 18:58 output.list
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas       620 Oct  9 18:58 runtime_log
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas   5109760 Oct  9 18:58 result.tar.gz
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas       658 Oct  9 18:58 wpbKDmIdXP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmpYFMDmPMWIFn.diag
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas      8704 Oct  9 18:58 runtime_log.err
[2025-10-09 18:58:59] -rw-r--r--. 1 boincer umatlas     21266 Oct  9 18:58 stderr.txt
[2025-10-09 18:58:59] HITS file was successfully produced:
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas 192729332 Oct  9 18:56 shared/HITS.pool.root.1
[2025-10-09 18:58:59]  *** Contents of shared directory: ***
[2025-10-09 18:58:59] total 409456
[2025-10-09 18:58:59] -rw-r--r--. 2 boincer umatlas 220844123 Oct  9 09:22 ATLAS.root_0
[2025-10-09 18:58:59] -rw-r--r--. 2 boincer umatlas     15120 Oct  9 09:22 start_atlas.sh
[2025-10-09 18:58:59] -rw-r--r--. 2 boincer umatlas    565610 Oct  9 09:22 input.tar.gz
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas 192729332 Oct  9 18:56 HITS.pool.root.1
[2025-10-09 18:58:59] -rw-------. 1 boincer umatlas   5109760 Oct  9 18:58 result.tar.gz
18:59:00 (942196): run_atlas exited; CPU time 52355.215278
18:59:00 (942196): called boinc_finish(0)

</stderr_txt>
]]>

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